Rorug02G0428000
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016372
Physical Location & Seq
Reverse (-)
54884680 .. 54886807
2128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0428000.1

Sequence Viewer

Length: 984 bp
ATGAGCATCACTAGTGGCAGCATCGTCACTAGAACATCATCCCCAACAACACCCAACTCCTCCTCCTCCTCTTCGACCAAAGGCAACGGCAACACCCAGGCCTGCGCCGCCTGCAAGTACCAGCGCCGGAAGTGCGCCCCCGACTGCATACTCGCCCCTTATTTCCCTCACGACCGGCAGCGCCAGTTCCTCAACGCCCACAAGCTCTTCGGCGTCAGCAACATCACCAAGATCATCAAACACCTCGACCACCGGGACAAGGAGGAGGCCATGCGCACCATCATTTTCCAGTCCGACGTCCGCGCCTCCGACCCCGTCGGCGGATGCTACCGGATCATCCAGGAACTCCAGCGCCTCATCGAGTACAACAAGGCCGAGCTCGACATCGTCCTCCACCAACTCGCCATTTGCCGAGCACAGGCACAGCAGCAACAACAGCAGCCCATAATGCAGCAGATTCCGGAGGTCGGGGACACTACCTGCGCTGATCAGATGATTAGTGTTGACCCTCTGAGCCTGTACGGAAACCCTATGCATTTTCATTATCTTCAGCAGCAGCCTAATGTGCAAGTTACTGGGCAGCAGGATCAGGGTGCCCCCTATTTGTTTGTGCAAAATACTAATGGGAATAATGGGCACCAGCAGCAGCATATGGTACCGGAGGATATGAACATGTGGGCTATGCAGGATTCCATGTCGTCGTTGCATATTAAGCATGGGATGAATGCCGGTGACTGTGAAGATATCAAGCCCTTTGTTGACATTGCCTGTGATGATGATCAGAGGAATCATGAGATCAAGTTCCAGCCTGATGCAATTGGTGACCAGAGTGATGAAGCATTGCTGAAGATAGAGGATGGCAATTTAAAAGATGATCAGCAGAGTGAGTCAGCTGCCCAACAAGTCCATCATCATTATCAGGATCATGGTGATCTGAAAGGTGAAGCTACTTTGTTCATGACCCTCACAAATTGTAGCAGTTGA

Protein Analysis

327

Amino Acids

36.69

Weight (kDa)

5.5

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 34 - 129 7.4e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016372)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38370
malus_domestica MD09G1150700.v1.1 MD17G1138100.v1.1
prunus_persica Prupe.3G174300_v2.0.a1
pyrus_communis pycom09g07040
rosa_chinensis RchiOBHm_Chr2g0151681
rosa_laevigata RLG00000020568
rosa_multiflora Rmu_sc0005294.1_g000047
rosa_roxburghii Rroxscaffold_2G00096260
rosa_rugosa Rorug02G0428000
rosa_samantha Rh2AG488700 Rh2BG501500 Rh2CG475300 Rh2DG512600
rosa_wichuraiana Rw2G040080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
Acc16I TGCGCA 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 488
Acc65I GGTACC 1 cut(s) 655
AccB1I GGYRCC 3 cut(s) 593, 636, 655
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 3 cut(s) 108, 301, 321
AclWI GGATC 3 cut(s) 341, 594, 930
AcuI CTGAAG 2 cut(s) 533, 866
AcyI GRCGYC 2 cut(s) 213, 297
AfaI GTAC 4 cut(s) 119, 365, 521, 657
AfiI CCNNNNNNNGG 4 cut(s) 259, 320, 418, 467
AflIII ACRYGT 1 cut(s) 672
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 96, 339
AluBI AGCT 4 cut(s) 205, 379, 893, 947
AluI AGCT 4 cut(s) 205, 379, 893, 947
Alw21I GWGCWC 2 cut(s) 381, 418
AlwI GGATC 3 cut(s) 341, 594, 930
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 3 cut(s) 99, 267, 372
Asp718I GGTACC 1 cut(s) 655
AspLEI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 485
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 5 cut(s) 217, 743, 833, 941, 953
BaeGI GKGCMC 2 cut(s) 598, 639
BanI GGYRCC 3 cut(s) 593, 636, 655
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 381, 418
BccI CCATC 3 cut(s) 287, 851, 915
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 98, 341
BclI TGATCA 3 cut(s) 487, 778, 874
BcnI CCSGG 1 cut(s) 254
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 30
BfoI RGCGCY 3 cut(s) 127, 184, 355
BfuAI ACCTGC 1 cut(s) 488
Bme1390I CCNGG 3 cut(s) 98, 254, 341
BmiI GGNNCC 3 cut(s) 595, 638, 657
BmrFI CCNGG 3 cut(s) 98, 254, 341
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 4 cut(s) 15, 30, 314, 802
BmuI ACTGGG 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 777
BsaHI GRCGYC 2 cut(s) 213, 297
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 3 cut(s) 330, 460, 658
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 320, 418, 467
Bse118I RCCGGY 2 cut(s) 174, 728
Bse1I ACTGG 3 cut(s) 184, 289, 580
Bse3DI GCAATG 2 cut(s) 762, 839
Bse8I GATNNNNATC 1 cut(s) 777
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 2 cut(s) 98, 341
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 5 cut(s) 38, 329, 336, 726, 862
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 4 cut(s) 259, 320, 418, 467
BseMI GCAATG 2 cut(s) 762, 839
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 3 cut(s) 184, 289, 580
BseRI GAGGAG 5 cut(s) 49, 52, 55, 58, 278
BseSI GKGCMC 2 cut(s) 598, 639
Bsh1236I CGCG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 3 cut(s) 101, 269, 374
BshNI GGYRCC 3 cut(s) 593, 636, 655
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 381, 418
BsiSI CCGG 7 cut(s) 127, 175, 253, 331, 461, 659, 729
BslFI GGGAC 2 cut(s) 269, 485
BslI CCNNNNNNNGG 4 cut(s) 259, 320, 418, 467
BsmFI GGGAC 2 cut(s) 269, 485
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 3 cut(s) 101, 269, 374
Bsp1286I GDGCHC 4 cut(s) 381, 418, 598, 639
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
BspACI CCGC 3 cut(s) 108, 301, 321
BspANI GGCC 3 cut(s) 101, 269, 374
BspCNI CTCAG 1 cut(s) 504
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 2 cut(s) 790, 957
BspLI GGNNCC 3 cut(s) 595, 638, 657
BspMI ACCTGC 1 cut(s) 488
BspPI GGATC 3 cut(s) 341, 594, 930
BspQI GCTCTTC 1 cut(s) 212
BspT107I GGYRCC 3 cut(s) 593, 636, 655
BsrDI GCAATG 2 cut(s) 762, 839
BsrFI RCCGGY 2 cut(s) 174, 728
BsrI ACTGG 3 cut(s) 184, 289, 580
BssAI RCCGGY 2 cut(s) 174, 728
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
BssNI GRCGYC 2 cut(s) 213, 297
Bst2UI CCWGG 2 cut(s) 98, 341
Bst4CI ACNGT 1 cut(s) 737
Bst6I CTCTTC 2 cut(s) 76, 212
BstACI GRCGYC 2 cut(s) 213, 297
BstC8I GCNNGC 2 cut(s) 103, 112
BstDEI CTNAG 1 cut(s) 512
BstEII GGTNACC 1 cut(s) 821
BstF5I GGATG 5 cut(s) 38, 329, 336, 726, 862
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 3 cut(s) 127, 184, 355
BstHHI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 485
BstKTI GATC 9 cut(s) 234, 336, 490, 589, 781, 798, 877, 925, 934
BstMBI GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 8 cut(s) 107, 111, 132, 436, 448, 565, 643, 712
BstNI CCWGG 2 cut(s) 98, 341
BstNSI RCATGY 1 cut(s) 676
BstPI GGTNACC 1 cut(s) 821
BstSCI CCNGG 3 cut(s) 96, 252, 339
BstSLI GKGCMC 2 cut(s) 598, 639
BstUI CGCG 1 cut(s) 303
BsuRI GGCC 3 cut(s) 101, 269, 374
BtsCI GGATG 5 cut(s) 38, 329, 336, 726, 862
BveI ACCTGC 1 cut(s) 488
Cac8I GCNNGC 2 cut(s) 103, 112
CciI TCATGA 2 cut(s) 790, 957
CfoI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 485
Cfr10I RCCGGY 2 cut(s) 174, 728
CseI GACGC 1 cut(s) 202
Csp6I GTAC 4 cut(s) 118, 364, 520, 656
CviAII CATG 7 cut(s) 271, 673, 694, 716, 791, 926, 958
CviQI GTAC 4 cut(s) 118, 364, 520, 656
DdeI CTNAG 1 cut(s) 512
DpnI GATC 9 cut(s) 233, 335, 489, 588, 780, 797, 876, 924, 933
DpnII GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
DraI TTTAAA 1 cut(s) 867
Eam1104I CTCTTC 2 cut(s) 76, 212
EarI CTCTTC 2 cut(s) 76, 212
EciI GGCGGA 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 379
Eco147I AGGCCT 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 381
Eco32I GATATC 1 cut(s) 745
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 533, 866
Eco91I GGTNACC 1 cut(s) 821
EcoICRI GAGCTC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 821
EcoRII CCWGG 2 cut(s) 96, 339
EcoRV GATATC 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 381
FaeI CATG 7 cut(s) 274, 676, 697, 719, 794, 929, 961
FaqI GGGAC 2 cut(s) 269, 485
FatI CATG 7 cut(s) 270, 672, 693, 715, 790, 925, 957
FauNDI CATATG 1 cut(s) 651
FbaI TGATCA 3 cut(s) 487, 778, 874
FokI GGATG 5 cut(s) 25, 323, 336, 733, 869
FriOI GRGCYC 1 cut(s) 381
FspAI RTGCGCAY 1 cut(s) 275
FspBI CTAG 2 cut(s) 12, 30
FspI TGCGCA 1 cut(s) 275
GlaI GCGC 8 cut(s) 106, 125, 136, 182, 275, 304, 353, 484
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 3 cut(s) 127, 184, 355
HaeIII GGCC 3 cut(s) 101, 269, 374
HapII CCGG 7 cut(s) 127, 175, 253, 331, 461, 659, 729
HgaI GACGC 1 cut(s) 202
HhaI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 485
Hin1I GRCGYC 2 cut(s) 213, 297
Hin1II CATG 7 cut(s) 274, 676, 697, 719, 794, 929, 961
Hin6I GCGC 8 cut(s) 105, 124, 135, 181, 274, 303, 352, 483
HinP1I GCGC 8 cut(s) 105, 124, 135, 181, 274, 303, 352, 483
HincII GTYRAC 2 cut(s) 505, 760
HindII GTYRAC 2 cut(s) 505, 760
HinfI GANTC 4 cut(s) 457, 689, 787, 887
HpaII CCGG 7 cut(s) 127, 175, 253, 331, 461, 659, 729
HphI GGTGA 5 cut(s) 217, 743, 833, 941, 953
Hpy166II GTNNAC 2 cut(s) 505, 760
Hpy188I TCNGA 6 cut(s) 295, 310, 492, 513, 783, 936
Hpy188III TCNNGA 5 cut(s) 170, 461, 791, 920, 958
Hpy8I GTNNAC 2 cut(s) 505, 760
Hpy99I CGWCG 3 cut(s) 299, 320, 703
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 9 cut(s) 114, 147, 451, 535, 568, 613, 685, 706, 815
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 111, 132, 436, 448, 565, 643, 712
HpyF3I CTNAG 1 cut(s) 512
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 2 cut(s) 213, 297
Hsp92II CATG 7 cut(s) 274, 676, 697, 719, 794, 929, 961
HspAI GCGC 8 cut(s) 105, 124, 135, 181, 274, 303, 352, 483
Kpn2I TCCGGA 1 cut(s) 460
KpnI GGTACC 1 cut(s) 659
Ksp22I TGATCA 3 cut(s) 487, 778, 874
Kzo9I GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
LguI GCTCTTC 1 cut(s) 212
LweI GCATC 4 cut(s) 15, 30, 314, 802
MaeI CTAG 2 cut(s) 12, 30
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 4 cut(s) 25, 571, 731, 821
MalI GATC 9 cut(s) 233, 335, 489, 588, 780, 797, 876, 924, 933
MboI GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
MboII GAAGA 5 cut(s) 63, 199, 539, 752, 859
MfeI CAATTG 1 cut(s) 816
MhlI GDGCHC 4 cut(s) 381, 418, 598, 639
MluCI AATT 3 cut(s) 816, 862, 970
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 2 cut(s) 318, 333
Mph1103I ATGCAT 1 cut(s) 537
MroI TCCGGA 1 cut(s) 460
MseI TTAA 2 cut(s) 711, 866
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 7 cut(s) 127, 175, 253, 331, 461, 659, 729
MspR9I CCNGG 3 cut(s) 98, 254, 341
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 2 cut(s) 98, 341
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 8 cut(s) 107, 111, 132, 436, 448, 565, 643, 712
NciI CCSGG 1 cut(s) 254
NdeI CATATG 1 cut(s) 651
NdeII GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
NlaIII CATG 7 cut(s) 274, 676, 697, 719, 794, 929, 961
NlaIV GGNNCC 3 cut(s) 595, 638, 657
NmeAIII GCCGAG 2 cut(s) 400, 437
NmuCI GTSAC 3 cut(s) 25, 731, 821
NsbI TGCGCA 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 537
NspI RCATGY 1 cut(s) 676
PagI TCATGA 2 cut(s) 790, 957
PceI AGGCCT 1 cut(s) 101
PciI ACATGT 1 cut(s) 672
PciSI GCTCTTC 1 cut(s) 212
PctI GAATGC 1 cut(s) 730
PfeI GAWTC 3 cut(s) 457, 689, 787
PflFI GACNNNGTC 2 cut(s) 314, 386
PfoI TCCNGGA 1 cut(s) 339
PleI GAGTC 1 cut(s) 895
PpsI GAGTC 1 cut(s) 895
PscI ACATGT 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 96, 339
PspEI GGTNACC 1 cut(s) 821
PspGI CCWGG 2 cut(s) 96, 339
PspN4I GGNNCC 3 cut(s) 595, 638, 657
PsyI GACNNNGTC 2 cut(s) 314, 386
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 4 cut(s) 119, 365, 521, 657
RsaNI GTAC 4 cut(s) 118, 364, 520, 656
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 711, 866
Sau3AI GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 3 cut(s) 98, 254, 341
SduI GDGCHC 4 cut(s) 381, 418, 598, 639
SetI ASST 9 cut(s) 207, 246, 300, 381, 468, 482, 895, 943, 949
SfaNI GCATC 4 cut(s) 15, 30, 314, 802
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 3 cut(s) 816, 862, 970
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 3 cut(s) 108, 301, 321
SspMI CTAG 2 cut(s) 12, 30
SstI GAGCTC 1 cut(s) 381
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 3 cut(s) 96, 252, 339
TaaI ACNGT 1 cut(s) 737
TaiI ACGT 1 cut(s) 300
TaqI TCGA 4 cut(s) 74, 246, 360, 381
TasI AATT 3 cut(s) 816, 862, 970
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 3 cut(s) 457, 689, 787
Tru1I TTAA 2 cut(s) 711, 866
Tru9I TTAA 2 cut(s) 711, 866
TseFI GTSAC 3 cut(s) 25, 731, 821
Tsp45I GTSAC 3 cut(s) 25, 731, 821
TspDTI ATGAA 5 cut(s) 530, 683, 737, 849, 946
TspGWI ACGGA 1 cut(s) 537
Tth111I GACNNNGTC 2 cut(s) 314, 386
XceI RCATGY 1 cut(s) 676
XspI CTAG 2 cut(s) 12, 30
ZraI GACGTC 1 cut(s) 298
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.