Prupe.3G233900_v2.0.a1

Indole-3-acetic acid-amido synthetase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
22968547 .. 22971408
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G233900.1

Sequence Viewer

Length: 1794 bp
ATGGAACCAGCTGCGTGTACGAATAACCAGAGCAATGGCAACTATGGAGAAGACATCATTGGGTGGTTTGAAGATGTGACTGAGAAAGCTGGTTTGGTTCAAACACAGACACTCAGGAAGATACTTGAGCAAAACTGCAGTGTGGAATATCTCAGGCAATGGTTGGGGGACATCAAAATCCAAGAGGTAGATGGATTTGTATTGGAATCTCTCTACACTTCTTTGGTGCCCCTTGCTTCACATGCAGATTTAGAGCCTTATATTCACAAAATTGCAAATGGGGACACTGGCCCTATACTCACCCAACAACCTATGACCACTCTCTCCTTAAGTTCTGGAACCACAGATGGGAGACAGAAGTACGTACCCTTTACACGCCATAGCGCACAGACCACTCTTCAAATATTTAGGTTGGCTGCAGCGTACAGATCAAGAGTTTATCCAACAAGGGAAGGAGGGAGGATCCTGGAATTCATATACAGCAGCAGACAGTTCAAAACTAAGGGGGGATTAACAGCAGGAACAGCCACAACTCACTACTATGCCAGCCAAGAATTCAAGATCAAACAGGAAAAAACCAAGTCATTCACTTGCAGCCCAGAAGAAGTCATTGCAAGTGGTGACAGCAAACAATCAACATACTGCCATCTCCTTCTTGGCCTCTTCTTCTCTGATCAAGTAGAGTTCATAACCTCCACCTTTGCCTATAGCATAGTGCAGGCCTTCATTACTTTTGAAGAACTCTGGAAAGACTTGTGCAATGACATCAGAGATGGCACTCTAAGCAAAAGAATCAATCTACCGAAAGTGCGAAAAGCGGTCTTGGATATCATCTCCCCAAACCCGACATTGGCTTCAAAAATCGAAGCTAGTTGCAAGGGCTTGGAAGATTTGGATTGGTTTGGTCTAATTCCTAAGCTCTGGCCAAATGCCAAGTATGTATATTCTATAATGACAGGATCAATGCAACCATACTTGAAAAAACTCAGACGCTTTGCAGGGGATGTGCCATTAGTTAGTGCAGAATATGGATCAACTGAGAGTTGGATTGGGGTGAATGTGGATCCTTGTTTGCCTCCAGAGGATGTGACTTTTGCTGTGGTACCAACTTTTTCTTACTTCGAGTTCATACCACTCCATAGACATAAGCAAGATTGCAATTTAGCCATTGATGACTTCATAGAAGATAAACCAGTCCCACTATCCCAAGTCAAGGTTGGACAGCAATATGAGATAGTCCTCACTACTTTCACTGGACTTTATAGGTACAGGTTAGGGGATGTGGTGGAAGTGGCTGGTTTCCACAATGGGACTCCAAAATTGGACTTTATATGCAGAAGAAAGCTTATATTGACAGTAAACATTGACAAAAACACAGAAAAGGACCTTCAGATAGTGGTAGAGAGAGGGTCTCAATTGCTGAGCAAGTCCAAAGCTGAACTGGTTGATTTTACAAGCCATGCTGATCTGCTAACTCAACCAGGCCACTACATCATATATTGGGAGATCAAAGGCGAAGTTGAAGAGAGGGTTCTTGGTGAATGTTGTAGAGAGATGGATGCATCATTTGTGGATCATGGCTATGTGGTCTCAAGGAGAAGCAATTCAATTGGGCCTCTGGAGCTGCGCATTGTGGAGAAAGGAACTTTCAAGAAAATTTTGGAACATTTCATAGTAAATGGTTCTGCTTTGAGCCAATTTAAGACCCCTAGGTGCACCAGCAACAAGGTGATCCTGAGTATTCTCAATCTATGCACCATTAAAAGGGTTTACAGCACTGCATATGCTCATTAG

Protein Analysis

598

Amino Acids

67.37

Weight (kDa)

6.52

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011188)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1628
Acc65I GGTACC 1 cut(s) 1102
AccB1I GGYRCC 2 cut(s) 226, 1102
AciI CCGC 1 cut(s) 818
AclWI GGATC 8 cut(s) 457, 470, 967, 1039, 1058, 1071, 1581, 1726
AcoI YGGCCR 1 cut(s) 923
AcsI RAATTY 3 cut(s) 470, 554, 1656
AcuI CTGAAG 1 cut(s) 1373
AfaI GTAC 6 cut(s) 19, 362, 366, 425, 1104, 1268
AfiI CCNNNNNNNGG 4 cut(s) 348, 850, 1213, 1764
AflII CTTAAG 1 cut(s) 328
AjnI CCWGG 2 cut(s) 465, 1480
AjuI GAANNNNNNNTTGG 4 cut(s) 42, 74, 77, 109
AluBI AGCT 7 cut(s) 11, 89, 869, 919, 1345, 1436, 1624
AluI AGCT 7 cut(s) 11, 89, 869, 919, 1345, 1436, 1624
Alw21I GWGCWC 1 cut(s) 1718
Alw26I GTCTC 3 cut(s) 346, 1416, 1594
Alw44I GTGCAC 1 cut(s) 1714
AlwI GGATC 8 cut(s) 457, 470, 967, 1039, 1058, 1071, 1581, 1726
AoxI GGCC 6 cut(s) 289, 658, 720, 923, 1483, 1613
ApaLI GTGCAC 1 cut(s) 1714
ApeKI GCWGC 6 cut(s) 11, 416, 419, 483, 594, 1624
ApoI RAATTY 3 cut(s) 470, 554, 1656
Asp700I GAANNNNTTC 1 cut(s) 1603
Asp718I GGTACC 1 cut(s) 1102
AspA2I CCTAGG 1 cut(s) 1709
AspLEI GCGC 2 cut(s) 386, 1629
AspS9I GGNCC 3 cut(s) 290, 1384, 1613
AsuHPI GGTGA 5 cut(s) 292, 632, 1066, 1550, 1741
AvaII GGWCC 1 cut(s) 1384
AvrII CCTAGG 1 cut(s) 1709
BaeGI GKGCMC 2 cut(s) 231, 1718
BalI TGGCCA 1 cut(s) 925
BamHI GGATCC 2 cut(s) 462, 1063
BanI GGYRCC 2 cut(s) 226, 1102
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 1718
BbvI GCAGC 5 cut(s) 403, 431, 495, 606, 1611
BccI CCATC 5 cut(s) 185, 341, 654, 767, 1549
BciT130I CCWGG 2 cut(s) 467, 1482
BclI TGATCA 1 cut(s) 673
BcoDI GTCTC 3 cut(s) 346, 1416, 1594
BfaI CTAG 2 cut(s) 870, 1710
BfmI CTRYAG 3 cut(s) 136, 417, 706
BfrI CTTAAG 1 cut(s) 328
BisI GCNGC 6 cut(s) 12, 417, 420, 484, 595, 1625
BlnI CCTAGG 1 cut(s) 1709
BlpI GCTNAGC 1 cut(s) 1421
BlsI GCNGC 6 cut(s) 13, 418, 421, 485, 596, 1626
Bme1390I CCNGG 2 cut(s) 467, 1482
Bme18I GGWCC 1 cut(s) 1384
BmgT120I GGNCC 3 cut(s) 290, 1384, 1613
BmiI GGNNCC 6 cut(s) 6, 228, 340, 464, 1065, 1104
BmrFI CCNGG 2 cut(s) 467, 1482
BmsI GCATC 2 cut(s) 1549, 1571
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 1396, 1428
BpmI CTGGAG 2 cut(s) 1062, 1640
Bpu10I CCTNAGC 1 cut(s) 915
Bpu1102I GCTNAGC 1 cut(s) 1421
BpuEI CTTGAG 2 cut(s) 146, 1576
BsaAI YACGTR 1 cut(s) 364
BsaI GGTCTC 2 cut(s) 1416, 1594
BsaJI CCNNGG 1 cut(s) 1709
Bsc4I CCNNNNNNNGG 4 cut(s) 348, 850, 1213, 1764
Bse1I ACTGG 4 cut(s) 292, 1193, 1258, 1446
Bse3DI GCAATG 4 cut(s) 40, 164, 609, 766
BseBI CCWGG 2 cut(s) 467, 1482
BseDI CCNNGG 1 cut(s) 1709
BseGI GGATG 4 cut(s) 1009, 1090, 1285, 1564
BseLI CCNNNNNNNGG 4 cut(s) 348, 850, 1213, 1764
BseMI GCAATG 4 cut(s) 40, 164, 609, 766
BseMII CTCAG 7 cut(s) 72, 127, 166, 1000, 1029, 1412, 1727
BseNI ACTGG 4 cut(s) 292, 1193, 1258, 1446
BseSI GKGCMC 2 cut(s) 231, 1718
BseXI GCAGC 5 cut(s) 403, 431, 495, 606, 1611
BsgI GTGCAG 2 cut(s) 737, 1041
BshFI GGCC 6 cut(s) 291, 660, 722, 925, 1485, 1615
BshNI GGYRCC 2 cut(s) 226, 1102
BsiHKAI GWGCWC 1 cut(s) 1718
BslFI GGGAC 4 cut(s) 182, 296, 1181, 1324
BslI CCNNNNNNNGG 4 cut(s) 348, 850, 1213, 1764
BsmAI GTCTC 3 cut(s) 346, 1416, 1594
BsmFI GGGAC 4 cut(s) 182, 296, 1181, 1324
BsnI GGCC 6 cut(s) 291, 660, 722, 925, 1485, 1615
Bso31I GGTCTC 2 cut(s) 1416, 1594
Bsp1286I GDGCHC 2 cut(s) 231, 1718
Bsp1720I GCTNAGC 1 cut(s) 1421
BspACI CCGC 1 cut(s) 818
BspANI GGCC 6 cut(s) 291, 660, 722, 925, 1485, 1615
BspCNI CTCAG 7 cut(s) 73, 126, 165, 999, 1030, 1413, 1728
BspLI GGNNCC 6 cut(s) 6, 228, 340, 464, 1065, 1104
BspMAI CTGCAG 2 cut(s) 140, 421
BspPI GGATC 8 cut(s) 457, 470, 967, 1039, 1058, 1071, 1581, 1726
BspT107I GGYRCC 2 cut(s) 226, 1102
BspTI CTTAAG 1 cut(s) 328
BspTNI GGTCTC 2 cut(s) 1416, 1594
BsrDI GCAATG 4 cut(s) 40, 164, 609, 766
BsrI ACTGG 4 cut(s) 292, 1193, 1258, 1446
BssECI CCNNGG 1 cut(s) 1709
BssT1I CCWWGG 1 cut(s) 1709
Bst2UI CCWGG 2 cut(s) 467, 1482
Bst4CI ACNGT 2 cut(s) 492, 1357
Bst6I CTCTTC 3 cut(s) 402, 668, 1518
BstAFI CTTAAG 1 cut(s) 328
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 547, 720
BstF5I GGATG 4 cut(s) 1009, 1090, 1285, 1564
BstHHI GCGC 2 cut(s) 386, 1629
BstMAI GTCTC 3 cut(s) 346, 1416, 1594
BstMWI GCNNNNNNNGC 4 cut(s) 242, 524, 783, 1621
BstNI CCWGG 2 cut(s) 467, 1482
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 465, 1480
BstSFI CTRYAG 3 cut(s) 136, 417, 706
BstSLI GKGCMC 2 cut(s) 231, 1718
BstSNI TACGTA 1 cut(s) 364
BstV1I GCAGC 5 cut(s) 403, 431, 495, 606, 1611
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 462, 1063
BstXI CCANNNNNNTGG 1 cut(s) 35
BstYI RGATCY 2 cut(s) 462, 1063
BsuRI GGCC 6 cut(s) 291, 660, 722, 925, 1485, 1615
BtsCI GGATG 4 cut(s) 1009, 1090, 1285, 1564
BtsI GCAGTG 2 cut(s) 145, 1776
BtsIMutI CAGTG 4 cut(s) 145, 285, 1251, 1776
Cac8I GCNNGC 2 cut(s) 547, 720
CfoI GCGC 2 cut(s) 386, 1629
Cfr13I GGNCC 3 cut(s) 290, 1384, 1613
CseI GACGC 1 cut(s) 999
Csp6I GTAC 6 cut(s) 18, 361, 365, 424, 1103, 1267
CviAII CATG 3 cut(s) 242, 1460, 1577
CviQI GTAC 6 cut(s) 18, 361, 365, 424, 1103, 1267
EaeI YGGCCR 1 cut(s) 923
Eam1104I CTCTTC 3 cut(s) 402, 668, 1518
EarI CTCTTC 3 cut(s) 402, 668, 1518
Eco105I TACGTA 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 1709
Eco147I AGGCCT 1 cut(s) 722
Eco31I GGTCTC 2 cut(s) 1416, 1594
Eco32I GATATC 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 1384
Eco57I CTGAAG 1 cut(s) 1373
EcoO109I RGGNCCY 1 cut(s) 1384
EcoRI GAATTC 2 cut(s) 470, 554
EcoRII CCWGG 2 cut(s) 465, 1480
EcoRV GATATC 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 1709
EcoT22I ATGCAT 1 cut(s) 1564
ErhI CCWWGG 1 cut(s) 1709
FaeI CATG 3 cut(s) 245, 1463, 1580
FaqI GGGAC 4 cut(s) 182, 296, 1181, 1324
FatI CATG 3 cut(s) 241, 1459, 1576
FauNDI CATATG 1 cut(s) 1783
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 6 cut(s) 12, 417, 420, 484, 595, 1625
FokI GGATG 4 cut(s) 1016, 1097, 1292, 1571
Fsp4HI GCNGC 6 cut(s) 12, 417, 420, 484, 595, 1625
FspBI CTAG 2 cut(s) 870, 1710
FspI TGCGCA 1 cut(s) 1628
GlaI GCGC 2 cut(s) 385, 1628
GluI GCNGC 6 cut(s) 12, 417, 420, 484, 595, 1625
GsuI CTGGAG 2 cut(s) 1062, 1640
HaeIII GGCC 6 cut(s) 291, 660, 722, 925, 1485, 1615
HgaI GACGC 1 cut(s) 999
HhaI GCGC 2 cut(s) 386, 1629
Hin1II CATG 3 cut(s) 245, 1463, 1580
Hin6I GCGC 2 cut(s) 384, 1627
HinP1I GCGC 2 cut(s) 384, 1627
HindIII AAGCTT 1 cut(s) 1343
HinfI GANTC 3 cut(s) 206, 792, 1312
HphI GGTGA 5 cut(s) 292, 632, 1066, 1550, 1741
Hpy166II GTNNAC 4 cut(s) 18, 1360, 1716, 1771
Hpy188I TCNGA 4 cut(s) 673, 770, 989, 1392
Hpy188III TCNNGA 9 cut(s) 115, 336, 432, 559, 745, 1079, 1619, 1651, 1735
Hpy8I GTNNAC 4 cut(s) 18, 1360, 1716, 1771
HpyAV CCTTC 4 cut(s) 446, 662, 733, 1397
HpyCH4III ACNGT 2 cut(s) 492, 1357
HpyCH4IV ACGT 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 524, 783, 1621
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 3 cut(s) 245, 1463, 1580
HspAI GCGC 2 cut(s) 384, 1627
KpnI GGTACC 1 cut(s) 1106
Ksp22I TGATCA 1 cut(s) 673
LmnI GCTCC 1 cut(s) 1621
Lsp1109I GCAGC 5 cut(s) 403, 431, 495, 606, 1611
LweI GCATC 2 cut(s) 1549, 1571
MaeI CTAG 2 cut(s) 870, 1710
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 3 cut(s) 76, 620, 1087
MfeI CAATTG 2 cut(s) 1415, 1608
MflI RGATCY 2 cut(s) 462, 1063
MhlI GDGCHC 2 cut(s) 231, 1718
MlsI TGGCCA 1 cut(s) 925
MluNI TGGCCA 1 cut(s) 925
MlyI GAGTC 1 cut(s) 1306
MmeI TCCRAC 3 cut(s) 467, 1025, 1198
Mox20I TGGCCA 1 cut(s) 925
Mph1103I ATGCAT 1 cut(s) 1564
MroXI GAANNNNTTC 1 cut(s) 1603
MscI TGGCCA 1 cut(s) 925
MseI TTAA 4 cut(s) 329, 512, 1701, 1761
MslI CAYNNNNRTG 2 cut(s) 540, 1581
Msp20I TGGCCA 1 cut(s) 925
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 467, 1482
MunI CAATTG 2 cut(s) 1415, 1608
MvaI CCWGG 2 cut(s) 467, 1482
MwoI GCNNNNNNNGC 4 cut(s) 242, 524, 783, 1621
NdeI CATATG 1 cut(s) 1783
NlaIII CATG 3 cut(s) 245, 1463, 1580
NlaIV GGNNCC 6 cut(s) 6, 228, 340, 464, 1065, 1104
NmuCI GTSAC 3 cut(s) 76, 620, 1087
NsbI TGCGCA 1 cut(s) 1628
NsiI ATGCAT 1 cut(s) 1564
NspI RCATGY 1 cut(s) 245
PceI AGGCCT 1 cut(s) 722
PdmI GAANNNNTTC 1 cut(s) 1603
PfeI GAWTC 2 cut(s) 206, 792
PfoI TCCNGGA 1 cut(s) 465
PkrI GCNGC 6 cut(s) 13, 418, 421, 485, 596, 1626
PleI GAGTC 1 cut(s) 1306
PpsI GAGTC 1 cut(s) 1306
Ppu21I YACGTR 1 cut(s) 364
PpuMI RGGWCCY 1 cut(s) 1384
Psp5II RGGWCCY 1 cut(s) 1384
Psp6I CCWGG 2 cut(s) 465, 1480
PspGI CCWGG 2 cut(s) 465, 1480
PspN4I GGNNCC 6 cut(s) 6, 228, 340, 464, 1065, 1104
PspPI GGNCC 3 cut(s) 290, 1384, 1613
PspPPI RGGWCCY 1 cut(s) 1384
PstI CTGCAG 2 cut(s) 140, 421
PsuI RGATCY 2 cut(s) 462, 1063
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 6 cut(s) 19, 362, 366, 425, 1104, 1268
RsaNI GTAC 6 cut(s) 18, 361, 365, 424, 1103, 1267
RseI CAYNNNNRTG 2 cut(s) 540, 1581
SaqAI TTAA 4 cut(s) 329, 512, 1701, 1761
SatI GCNGC 6 cut(s) 12, 417, 420, 484, 595, 1625
Sau96I GGNCC 3 cut(s) 290, 1384, 1613
SchI GAGTC 1 cut(s) 1306
ScrFI CCNGG 2 cut(s) 467, 1482
SduI GDGCHC 2 cut(s) 231, 1718
SfaNI GCATC 2 cut(s) 1549, 1571
SfcI CTRYAG 3 cut(s) 136, 417, 706
SinI GGWCC 1 cut(s) 1384
SmiMI CAYNNNNRTG 2 cut(s) 540, 1581
SmlI CTYRAG 3 cut(s) 125, 328, 1591
SmoI CTYRAG 3 cut(s) 125, 328, 1591
SnaBI TACGTA 1 cut(s) 364
SseBI AGGCCT 1 cut(s) 722
SsiI CCGC 1 cut(s) 818
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 870, 1710
StuI AGGCCT 1 cut(s) 722
StyD4I CCNGG 2 cut(s) 465, 1480
StyI CCWWGG 1 cut(s) 1709
TaaI ACNGT 2 cut(s) 492, 1357
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 864, 1122
TfiI GAWTC 2 cut(s) 206, 792
Tru1I TTAA 4 cut(s) 329, 512, 1701, 1761
Tru9I TTAA 4 cut(s) 329, 512, 1701, 1761
TscAI CASTG 4 cut(s) 145, 292, 1258, 1783
TseFI GTSAC 3 cut(s) 76, 620, 1087
TseI GCWGC 6 cut(s) 11, 416, 419, 483, 594, 1624
Tsp45I GTSAC 3 cut(s) 76, 620, 1087
TspDTI ATGAA 6 cut(s) 463, 676, 715, 1117, 1168, 1660
TspRI CASTG 4 cut(s) 145, 292, 1258, 1783
Vha464I CTTAAG 1 cut(s) 328
VneI GTGCAC 1 cut(s) 1714
VpaK11BI GGWCC 1 cut(s) 1384
XapI RAATTY 3 cut(s) 470, 554, 1656
XceI RCATGY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 4 cut(s) 188, 653, 1214, 1438
XmaJI CCTAGG 1 cut(s) 1709
XmnI GAANNNNTTC 1 cut(s) 1603
XspI CTAG 2 cut(s) 870, 1710
Zsp2I ATGCAT 1 cut(s) 1564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.