Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011188

Physical Location & Seq

Genomic Coordinates Reverse (-)

62599991 .. 62601127

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0495900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCCGGACGGCTGTGCCGCGGTTCTCACCGACCACGAAGACGTTCTCGTTGAAATACTCGCAAGACTCCCCGTCAAAACCCTAATCCGATTCCGGTGCGTCTGCACGGCGTGGCGTTCCCTAATCTCCGACCCTCATTTCCTCAAGAAGCAGAGGAAATACGACGCCGAAAGAGGCCTCAACGACAGCGATCTCCGGCTGCTGTTCTCCATGAAGCCTCCCAGCTCCATGGGCTTGGTGGATTTAAAGGGTTTGAAGGATGCTGAGCTGGCCAAAAGATTCAGAGAGGACCGTGTTGCAACCAGAGAGCTTGATTTTCCGGTGAGTCTTGATCATGGTTATGATATGGTGAATGTGGGAACTTCCAATGGGATTATATGCATTCAATTTAATCGCGGCGAGTATGCTTTATGGAACCCTTGTACTGGAGAGTACAATGTGTTGCCGAAACCTAGTGTTTTTTGTTATCCAAGGTATTATGGATTTGGTTATGATGAAATCAATGATGATTACAAGGTAGTGAAGGGGTCACATTGTGAAACTGATGGGAATGGTCCGCTGAAACCGCTGATTCAGGTGTTTTCGCTGAGAAAAGGTACATGGAAGACCTATCCCGGCCCGAAGAATGTTTGCATGAGAGGGCAGGGGGCGTTTGTAAACGGAAACCTGCATTGGCTGTGGTTTGAGGAGTGGTGGAAGACGGAAAGCAAGGAAATTAGACCTTTTAGTTTAGCTGAGGAGAAATTTCAGGAGGCGATGCCGATTCCTTGGAATAACATTGGTGGAATTTTGATTTCCGGGAATCATCTCTGTGTACATAGTGAAACAGGGGCTGTCAGGATAGTGATGATGAAGGAATACGGGGTCAAGGAATCTTGGACTGAAGTGCTGTATCTGACTATTTTTACTGTACCTCAGATATATGATGAAATCTGCAAGGTGAAGCCTCTGTGGATTCTAGAGAATGGTGATGTTTTGGCGTACACAGTACAACAAGGAGGCTACTTGTCATTATATAAACCAAAGGATAAGGCATTTAGGAATGTTATTAAGCCTGAAGGGAGTTACAGGTTTGAATCCGTCATTTACAGAGAAACTTTTGTTTCACCGGTAACTGGCAATCTTGGAGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

378

Amino Acids

43.25

Weight (kDa)

6.67

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	13 - 49	2e-10	F-box domain
F-box-like	PF12937	14 - 47	1.5e-07	F-box-like
FBA_3	PF08268	111 - 349	1.5e-16	F-box associated beta propeller domain
FBA_1	PF07734	113 - 301	5.5e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03400 AT4G03400
fragaria_vesca	FvH4_6g44990 FvH4_6g44990
malus_domestica	MD17G1081000.v1.1
prunus_persica	Prupe.3G233900_v2.0.a1
pyrus_communis	pycom09g01640
rosa_chinensis	RchiOBHm_Chr2g0162261
rosa_laevigata	RLG00000021331
rosa_multiflora	Rmu_sc0004020.1_g000022
rosa_roxburghii	Rroxscaffold_2G00088210
rosa_rugosa	Rorug02G0495700 Rorug02G0495800 Rorug02G0495900 Rorug02G0496000
rosa_samantha	Rh2AG562000 Rh2BG575100 Rh2CG545300 Rh2DG585000
rosa_wichuraiana	Rw2G046540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	675
AccII	CGCG	2 cut(s)	20, 396
AciI	CCGC	5 cut(s)	18, 20, 396, 557, 566
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	743, 786
AcuI	CTGAAG	2 cut(s)	903, 1077
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	2 cut(s)	111, 536
AfaI	GTAC	7 cut(s)	424, 434, 598, 816, 912, 983, 990
AfiI	CCNNNNNNNGG	2 cut(s)	425, 1115
AgeI	ACCGGT	1 cut(s)	1108
AgsI	TTSAA	4 cut(s)	53, 256, 386, 1076
AhdI	GACNNNNNGTC	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	655, 687
AluBI	AGCT	4 cut(s)	225, 268, 310, 734
AluI	AGCT	4 cut(s)	225, 268, 310, 734
AlwNI	CAGNNNCTG	1 cut(s)	833
AoxI	GGCC	3 cut(s)	175, 270, 616
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	743, 786
AsiGI	ACCGGT	1 cut(s)	1108
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	289, 554, 617
AsuC2I	CCSGG	2 cut(s)	615, 799
AsuHPI	GGTGA	6 cut(s)	19, 334, 361, 952, 980, 1098
AvaII	GGWCC	2 cut(s)	289, 554
BalI	TGGCCA	1 cut(s)	272
BbsI	GAAGAC	3 cut(s)	45, 611, 704
BbvCI	CCTCAGC	1 cut(s)	735
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	2 cut(s)	25, 123
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	2 cut(s)	615, 799
BfaI	CTAG	2 cut(s)	453, 959
BfuAI	ACCTGC	1 cut(s)	675
BisI	GCNGC	3 cut(s)	18, 200, 397
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	3 cut(s)	19, 201, 398
Bme1390I	CCNGG	2 cut(s)	615, 799
Bme18I	GGWCC	2 cut(s)	289, 554
BmeRI	GACNNNNNGTC	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	289, 554, 617
BmiI	GGNNCC	1 cut(s)	416
BmrFI	CCNGG	2 cut(s)	615, 799
BmsI	GCATC	2 cut(s)	250, 747
BpiI	GAAGAC	3 cut(s)	45, 611, 704
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	735
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	615, 799
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	18, 228, 470, 767
BsaWI	WCCGGW	3 cut(s)	93, 319, 1108
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 1115
Bse118I	RCCGGY	1 cut(s)	1108
Bse1I	ACTGG	2 cut(s)	430, 1120
BseDI	CCNNGG	4 cut(s)	18, 228, 470, 767
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	425, 1115
BseMII	CTCAG	4 cut(s)	255, 578, 726, 929
BseNI	ACTGG	2 cut(s)	430, 1120
BseRI	GAGGAG	2 cut(s)	701, 752
BseXI	GCAGC	1 cut(s)	186
BseYI	CCCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	2 cut(s)	20, 396
BshFI	GGCC	3 cut(s)	177, 272, 618
BshTI	ACCGGT	1 cut(s)	1108
BsiSI	CCGG	7 cut(s)	5, 94, 196, 320, 615, 798, 1109
BslI	CCNNNNNNNGG	2 cut(s)	425, 1115
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	3 cut(s)	177, 272, 618
Bsp1407I	TGTACA	1 cut(s)	814
Bsp143I	GATC	2 cut(s)	190, 331
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	5 cut(s)	18, 20, 396, 557, 566
BspANI	GGCC	3 cut(s)	177, 272, 618
BspCNI	CTCAG	4 cut(s)	256, 579, 727, 928
BspFNI	CGCG	2 cut(s)	20, 396
BspLI	GGNNCC	1 cut(s)	416
BspMI	ACCTGC	1 cut(s)	675
BsrFI	RCCGGY	1 cut(s)	1108
BsrGI	TGTACA	1 cut(s)	814
BsrI	ACTGG	2 cut(s)	430, 1120
BssAI	RCCGGY	1 cut(s)	1108
BssECI	CCNNGG	4 cut(s)	18, 228, 470, 767
BssMI	GATC	2 cut(s)	190, 331
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	3 cut(s)	228, 470, 767
Bst4CI	ACNGT	3 cut(s)	293, 910, 988
BstACI	GRCGYC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	814
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	264, 587, 735, 915
BstDSI	CCRYGG	2 cut(s)	18, 228
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	2 cut(s)	20, 396
BstKTI	GATC	2 cut(s)	193, 334
BstMBI	GATC	2 cut(s)	190, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 269, 565
BstSCI	CCNGG	2 cut(s)	613, 797
BstUI	CGCG	2 cut(s)	20, 396
BstV1I	GCAGC	1 cut(s)	186
BstV2I	GAAGAC	3 cut(s)	45, 611, 704
BstXI	CCANNNNNNTGG	2 cut(s)	229, 235
BsuRI	GGCC	3 cut(s)	177, 272, 618
BtgI	CCRYGG	2 cut(s)	18, 228
BtgZI	GCGATG	1 cut(s)	770
BtsCI	GGATG	1 cut(s)	265
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	833
Cfr10I	RCCGGY	1 cut(s)	1108
Cfr13I	GGNCC	3 cut(s)	289, 554, 617
Cfr42I	CCGCGG	1 cut(s)	21
CseI	GACGC	2 cut(s)	88, 173
Csp6I	GTAC	7 cut(s)	423, 433, 597, 815, 911, 982, 989
CspAI	ACCGGT	1 cut(s)	1108
CviAII	CATG	5 cut(s)	211, 229, 335, 600, 634
CviQI	GTAC	7 cut(s)	423, 433, 597, 815, 911, 982, 989
DdeI	CTNAG	4 cut(s)	264, 587, 735, 915
DpnI	GATC	2 cut(s)	192, 333
DpnII	GATC	2 cut(s)	190, 331
DraI	TTTAAA	1 cut(s)	246
DraIII	CACNNNGTG	2 cut(s)	111, 536
DriI	GACNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	270
Eam1105I	GACNNNNNGTC	1 cut(s)	71
Eco130I	CCWWGG	3 cut(s)	228, 470, 767
Eco147I	AGGCCT	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	289, 554
Eco57I	CTGAAG	2 cut(s)	903, 1077
EcoT14I	CCWWGG	3 cut(s)	228, 470, 767
EcoT22I	ATGCAT	1 cut(s)	383
ErhI	CCWWGG	3 cut(s)	228, 470, 767
FaeI	CATG	5 cut(s)	214, 232, 338, 603, 637
FatI	CATG	5 cut(s)	210, 228, 334, 599, 633
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	3 cut(s)	18, 200, 397
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	18, 200, 397
FspBI	CTAG	2 cut(s)	453, 959
GluI	GCNGC	3 cut(s)	18, 200, 397
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	177, 272, 618
HapII	CCGG	7 cut(s)	5, 94, 196, 320, 615, 798, 1109
HgaI	GACGC	2 cut(s)	88, 173
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	214, 232, 338, 603, 637
HpaII	CCGG	7 cut(s)	5, 94, 196, 320, 615, 798, 1109
HphI	GGTGA	6 cut(s)	19, 334, 361, 952, 980, 1098
Hpy166II	GTNNAC	3 cut(s)	658, 815, 984
Hpy188I	TCNGA	6 cut(s)	89, 130, 284, 897, 918, 1136
Hpy188III	TCNNGA	5 cut(s)	145, 329, 749, 838, 959
Hpy8I	GTNNAC	3 cut(s)	658, 815, 984
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	4 cut(s)	250, 517, 847, 1052
HpyCH4III	ACNGT	3 cut(s)	293, 910, 988
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	6 cut(s)	105, 299, 381, 633, 670, 936
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 269, 565
HpyF3I	CTNAG	4 cut(s)	264, 587, 735, 915
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	214, 232, 338, 603, 637
Ksp22I	TGATCA	1 cut(s)	331
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	190, 331
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	2 cut(s)	250, 747
MaeI	CTAG	2 cut(s)	453, 959
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	528, 1064, 1111
MalI	GATC	2 cut(s)	192, 333
MboI	GATC	2 cut(s)	190, 331
MboII	GAAGA	4 cut(s)	50, 616, 634, 709
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	4 cut(s)	386, 714, 743, 786
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	60, 334
MmeI	TCCRAC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	272
Mph1103I	ATGCAT	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	3 cut(s)	245, 390, 1050
MslI	CAYNNNNRTG	2 cut(s)	339, 810
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	3 cut(s)	20, 559, 568
MspI	CCGG	7 cut(s)	5, 94, 196, 320, 615, 798, 1109
MspR9I	CCNGG	2 cut(s)	615, 799
Mva1269I	GAATGC	1 cut(s)	381
MvnI	CGCG	2 cut(s)	20, 396
MwoI	GCNNNNNNNGC	3 cut(s)	231, 269, 565
NciI	CCSGG	2 cut(s)	615, 799
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	190, 331
NlaIII	CATG	5 cut(s)	214, 232, 338, 603, 637
NlaIV	GGNNCC	1 cut(s)	416
NmuCI	GTSAC	1 cut(s)	528
NsiI	ATGCAT	1 cut(s)	383
PceI	AGGCCT	1 cut(s)	177
PctI	GAATGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	8 cut(s)	90, 279, 571, 763, 802, 872, 955, 1076
PfoI	TCCNGGA	1 cut(s)	797
PinAI	ACCGGT	1 cut(s)	1108
PkrI	GCNGC	3 cut(s)	19, 201, 398
PleI	GAGTC	2 cut(s)	60, 333
PpsI	GAGTC	2 cut(s)	60, 333
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	3 cut(s)	289, 554, 617
PstNI	CAGNNNCTG	1 cut(s)	833
RsaI	GTAC	7 cut(s)	424, 434, 598, 816, 912, 983, 990
RsaNI	GTAC	7 cut(s)	423, 433, 597, 815, 911, 982, 989
RseI	CAYNNNNRTG	2 cut(s)	339, 810
SacII	CCGCGG	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	245, 390, 1050
SatI	GCNGC	3 cut(s)	18, 200, 397
Sau3AI	GATC	2 cut(s)	190, 331
Sau96I	GGNCC	3 cut(s)	289, 554, 617
SchI	GAGTC	2 cut(s)	60, 334
ScrFI	CCNGG	2 cut(s)	615, 799
SfaNI	GCATC	2 cut(s)	250, 747
Sfr303I	CCGCGG	1 cut(s)	21
SgrBI	CCGCGG	1 cut(s)	21
SinI	GGWCC	2 cut(s)	289, 554
SmiMI	CAYNNNNRTG	2 cut(s)	339, 810
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	4 cut(s)	386, 714, 743, 786
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	5 cut(s)	18, 20, 396, 557, 566
SspMI	CTAG	2 cut(s)	453, 959
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	613, 797
StyI	CCWWGG	3 cut(s)	228, 470, 767
TaaI	ACNGT	3 cut(s)	293, 910, 988
TaiI	ACGT	1 cut(s)	45
TasI	AATT	4 cut(s)	386, 714, 743, 786
TatI	WGTACW	4 cut(s)	422, 432, 814, 988
TauI	GCSGC	2 cut(s)	20, 399
TfiI	GAWTC	8 cut(s)	90, 279, 571, 763, 802, 872, 955, 1076
Tru1I	TTAA	3 cut(s)	245, 390, 1050
Tru9I	TTAA	3 cut(s)	245, 390, 1050
TseFI	GTSAC	1 cut(s)	528
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	528
TspDTI	ATGAA	4 cut(s)	227, 510, 866, 942
TspGWI	ACGGA	3 cut(s)	675, 716, 1069
VpaK11BI	GGWCC	2 cut(s)	289, 554
XapI	RAATTY	2 cut(s)	743, 786
XbaI	TCTAGA	1 cut(s)	958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	2 cut(s)	453, 959
Zsp2I	ATGCAT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.