Prupe.4G012900_v2.0.a1

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015374
Physical Location & Seq
Reverse (-)
608213 .. 610433
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G012900.1

Sequence Viewer

Length: 768 bp
ATGGAGAAATCGAAGATTGGGAGCAGATTCGAAGGCAAAGTAGCGATTGTGACGGCTTCCACTCAGGGCATCGGATTCGCCATCGCCGAGCGACTCGGTTTGGAAGGAGCCTCTGTTGTTATCTCCTCTCGCAAGCAGAAAAACGTTGATGAAGCAGTTCAAACACTTAAAGCTGGAGGAATTGAAGTGTTTGGAGTCGTTTGTCACGTGTCAAATGAAGAACAGAGGAAGAACCTCATAAGCAAGACTGTGCAGAAATATGGAAAAATAGATGTGGTTGTATCAAATGCTGCTGCAAATCCATCAATTGATACCATATTGCAAACCAAAGAATCTGTGCTTGACAAGCTATGGGAAATAAATGTCAAAGCTTCTATACTTCTTCTGAAGGACGCAGATCCTCACTTGAAGAAGGGTTCTTCAGTTGTTATCATTTCCTCGATTGCTGGCTACCATCCACCAGCTTCCATGGCAATGTATGGGGTCACTAAAACAGCTCTTCTTGGGCTAACCAAGGCTCTTGCTGCTGATATGGCCCCAAATACTCGTGTAAATTGTGTTGCTCCTGGTTTTGTACCTACAAACTTTGCTTCATACATTACAGAAACTGATGCTGTGAGGAAGTCCCTCGAGGAGCAGACGTTACTTAACAGGCTTGGTACCACTGGAGACATGGCTGCTGCCGCTGCCTTTTTGGCATCGGATGATGCTTCTTACATAACGGGAGAAACTCTGGTGGTGGCTGGAGGGATGCCCTCTAGACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000253 GO:0001101 GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004090 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005783 GO:0005789 GO:0005829 GO:0006066 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008106 GO:0008150 GO:0008152 GO:0008202 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0012505 GO:0014070 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0016651 GO:0016655 GO:0018455 GO:0019752 GO:0021700 GO:0022607 GO:0022622 GO:0030154 GO:0031907 GO:0031974 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034308 GO:0034613 GO:0034641 GO:0034754 GO:0040007 GO:0042175 GO:0042180 GO:0042221 GO:0042430 GO:0042445 GO:0042572 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051262 GO:0051641 GO:0051649 GO:0052650 GO:0055114 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071695 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080024 GO:0080026 GO:0080147 GO:0090558 GO:0090627 GO:0098827 GO:0099402 GO:1901360 GO:1901564 GO:1901615 GO:1901698 GO:1901700 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 ko04146 map00830 map01100 map04146
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

256

Amino Acids

26.85

Weight (kDa)

8.43

Isoelectric Point (pI)

26.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05530
fragaria_vesca FvH4_3g01160
malus_domestica MD05G1355400.v1.1 MD05G1355800.v1.1 MD10G1329100.v1.1
prunus_persica Prupe.4G012900_v2.0.a1
pyrus_communis pycom10g27890
rosa_chinensis RchiOBHm_Chr5g0001721
rosa_laevigata RLG00000030962
rosa_multiflora Rmu_ssc0000237.1_g000021
rosa_roxburghii Rroxscaffold_1G00071180 Rroxscaffold_1G00074590
rosa_rugosa Rorug04G0392200
rosa_samantha Rh5AG013600 Rh5CG014600
rosa_wichuraiana Rw5G001320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 629
Acc65I GGTACC 1 cut(s) 659
AccB1I GGYRCC 1 cut(s) 659
AciI CCGC 1 cut(s) 684
AclI AACGTT 1 cut(s) 144
AclWI GGATC 1 cut(s) 392
AcuI CTGAAG 2 cut(s) 405, 407
AcvI CACGTG 1 cut(s) 208
AfaI GTAC 2 cut(s) 576, 661
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 3 cut(s) 161, 185, 409
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 5 cut(s) 173, 349, 371, 464, 497
AluI AGCT 5 cut(s) 173, 349, 371, 464, 497
Alw26I GTCTC 1 cut(s) 663
AlwI GGATC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 1 cut(s) 534
ApeKI GCWGC 6 cut(s) 290, 293, 524, 677, 680, 686
Asp700I GAANNNNTTC 1 cut(s) 156
Asp718I GGTACC 1 cut(s) 659
AspS9I GGNCC 1 cut(s) 535
AsuII TTCGAA 1 cut(s) 30
AvaI CYCGRG 1 cut(s) 629
BanI GGYRCC 1 cut(s) 659
BauI CACGAG 1 cut(s) 546
BbrPI CACGTG 1 cut(s) 208
BbvI GCAGC 6 cut(s) 277, 280, 511, 664, 667, 673
BccI CCATC 3 cut(s) 89, 310, 462
BceAI ACGGC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 567
BcoDI GTCTC 1 cut(s) 663
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 1 cut(s) 764
BglI GCCNNNNNGGC 1 cut(s) 695
BisI GCNGC 7 cut(s) 291, 294, 525, 678, 681, 684, 687
BlsI GCNGC 7 cut(s) 292, 295, 526, 679, 682, 685, 688
Bme1390I CCNGG 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 1 cut(s) 535
BmiI GGNNCC 3 cut(s) 109, 537, 661
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 5 cut(s) 78, 601, 697, 707, 741
BpmI CTGGAG 3 cut(s) 195, 687, 765
Bpu14I TTCGAA 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 468, 513
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 626, 656
Bse1I ACTGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 2 cut(s) 468, 513
BseGI GGATG 3 cut(s) 454, 709, 756
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 2 cut(s) 115, 647
BseXI GCAGC 6 cut(s) 277, 280, 511, 664, 667, 673
BsgI GTGCAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 536
BshNI GGYRCC 1 cut(s) 659
BsiHKCI CYCGRG 1 cut(s) 629
BslFI GGGAC 1 cut(s) 610
BsmAI GTCTC 1 cut(s) 663
BsmFI GGGAC 1 cut(s) 610
BsnI GGCC 1 cut(s) 536
BsoBI CYCGRG 1 cut(s) 629
Bsp119I TTCGAA 1 cut(s) 30
Bsp143I GATC 1 cut(s) 397
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 1 cut(s) 684
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 109, 537, 661
BspPI GGATC 1 cut(s) 392
BspQI GCTCTTC 1 cut(s) 504
BspT104I TTCGAA 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 2 cut(s) 468, 513
BssMI GATC 1 cut(s) 397
BssSI CACGAG 1 cut(s) 546
BssT1I CCWWGG 2 cut(s) 468, 513
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 208
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 134, 448
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 3 cut(s) 454, 709, 756
BstKTI GATC 1 cut(s) 400
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 7 cut(s) 346, 470, 524, 533, 683, 686, 695
BstNI CCWGG 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 764
BstV1I GCAGC 6 cut(s) 277, 280, 511, 664, 667, 673
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 67
BtsCI GGATG 3 cut(s) 454, 709, 756
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 2 cut(s) 134, 448
CaiI CAGNNNCTG 1 cut(s) 608
Cfr13I GGNCC 1 cut(s) 535
CseI GACGC 1 cut(s) 401
Csp6I GTAC 2 cut(s) 575, 660
CviAII CATG 2 cut(s) 469, 673
CviQI GTAC 2 cut(s) 575, 660
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 2 cut(s) 468, 513
Eco57I CTGAAG 2 cut(s) 405, 407
Eco72I CACGTG 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 468, 513
ErhI CCWWGG 2 cut(s) 468, 513
FaeI CATG 2 cut(s) 472, 676
FaqI GGGAC 1 cut(s) 610
FatI CATG 2 cut(s) 468, 672
Fnu4HI GCNGC 7 cut(s) 291, 294, 525, 678, 681, 684, 687
FokI GGATG 3 cut(s) 441, 716, 763
Fsp4HI GCNGC 7 cut(s) 291, 294, 525, 678, 681, 684, 687
FspBI CTAG 1 cut(s) 759
GluI GCNGC 7 cut(s) 291, 294, 525, 678, 681, 684, 687
GsuI CTGGAG 3 cut(s) 195, 687, 765
HaeIII GGCC 1 cut(s) 536
HgaI GACGC 1 cut(s) 401
Hin1II CATG 2 cut(s) 472, 676
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 5 cut(s) 27, 75, 93, 195, 332
Hpy188I TCNGA 3 cut(s) 74, 387, 703
Hpy188III TCNNGA 1 cut(s) 759
HpyAV CCTTC 4 cut(s) 26, 98, 382, 406
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 3 cut(s) 144, 207, 641
HpyCH4V TGCA 3 cut(s) 253, 296, 322
HpyF10VI GCNNNNNNNGC 7 cut(s) 346, 470, 524, 533, 683, 686, 695
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 3 cut(s) 144, 207, 641
Hsp92II CATG 2 cut(s) 472, 676
KpnI GGTACC 1 cut(s) 663
Kzo9I GATC 1 cut(s) 397
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 4 cut(s) 21, 107, 568, 634
Lsp1109I GCAGC 6 cut(s) 277, 280, 511, 664, 667, 673
LweI GCATC 5 cut(s) 78, 601, 697, 707, 741
MaeI CTAG 1 cut(s) 759
MaeII ACGT 3 cut(s) 144, 207, 641
MaeIII GTNAC 4 cut(s) 49, 203, 484, 642
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 7 cut(s) 25, 230, 241, 374, 411, 421, 491
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 397
MluCI AATT 3 cut(s) 180, 306, 553
MlyI GAGTC 2 cut(s) 87, 204
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 168, 648
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 686
MspR9I CCNGG 1 cut(s) 567
MunI CAATTG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 7 cut(s) 346, 470, 524, 533, 683, 686, 695
NcoI CCATGG 1 cut(s) 468
NdeII GATC 1 cut(s) 397
NlaIII CATG 2 cut(s) 472, 676
NlaIV GGNNCC 3 cut(s) 109, 537, 661
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 3 cut(s) 49, 203, 484
NspV TTCGAA 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 629
PciSI GCTCTTC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 204
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 3 cut(s) 27, 75, 332
PkrI GCNGC 7 cut(s) 292, 295, 526, 679, 682, 685, 688
PleI GAGTC 2 cut(s) 87, 203
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
PpsI GAGTC 2 cut(s) 87, 203
Ppu21I YACGTR 1 cut(s) 208
Psp1406I AACGTT 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 565
PspCI CACGTG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 3 cut(s) 109, 537, 661
PspPI GGNCC 1 cut(s) 535
PspXI VCTCGAGB 1 cut(s) 629
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 2 cut(s) 576, 661
RsaNI GTAC 2 cut(s) 575, 660
RseI CAYNNNNRTG 1 cut(s) 473
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 2 cut(s) 168, 648
SatI GCNGC 7 cut(s) 291, 294, 525, 678, 681, 684, 687
Sau3AI GATC 1 cut(s) 397
Sau96I GGNCC 1 cut(s) 535
SchI GAGTC 2 cut(s) 87, 204
ScrFI CCNGG 1 cut(s) 567
SfaNI GCATC 5 cut(s) 78, 601, 697, 707, 741
SfcI CTRYAG 1 cut(s) 764
Sfr274I CTCGAG 1 cut(s) 629
SfuI TTCGAA 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 3 cut(s) 180, 306, 553
SsiI CCGC 1 cut(s) 684
SspMI CTAG 1 cut(s) 759
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 2 cut(s) 468, 513
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 3 cut(s) 147, 210, 644
TaqI TCGA 4 cut(s) 11, 30, 440, 630
TasI AATT 3 cut(s) 180, 306, 553
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 3 cut(s) 27, 75, 332
Tru1I TTAA 2 cut(s) 168, 648
Tru9I TTAA 2 cut(s) 168, 648
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 3 cut(s) 49, 203, 484
TseI GCWGC 6 cut(s) 290, 293, 524, 677, 680, 686
Tsp45I GTSAC 3 cut(s) 49, 203, 484
TspDTI ATGAA 3 cut(s) 165, 231, 582
TspRI CASTG 1 cut(s) 670
XbaI TCTAGA 1 cut(s) 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XhoI CTCGAG 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.