RchiOBHm_Chr5g0001721

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015374
Physical Location & Seq
Reverse (-)
927768 .. 929886
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28313

Sequence Viewer

Length: 768 bp
ATGGAGAAGACGACGATCGGAAAGAGATTCGTCGGCAAAGTAGCTCTCGTCACCGCTTCTACTCAGGGCATCGGCTTCGCCATCGCCGAGCGACTCGGCCTCGAAGGCGCCTCCGTCGTCATCTCCTCCCGCAAGCAGAAAAACGTGGATGAAGCGGTTGATCAACTTAAGGCGCAAGGAATTGAAGCTTTGGGAGTCGTCTGTCACGTGTCTAATTTGCAGCAAAGGAAGAATCTGATAGACAAGACTGTGCAGAAATATGGAAAGATAGATGTCGTAGTATCAAATGCTGCTGCCAATCCATCAGTTGAGAGGATATTGCTAACCCAAGAGTCTGTTCTTGACAAGCTATGGGAAATAAATGTCAAAGCTTCTATACTTCTTCTAAAGGAAGCAGCTCCTCACTTGAAGAAAGGTTCTTCTGTTATTCTCATATCCTCAATTGCTGGCTTCCAACCACCAGCTTCCATGGCAATGTATGGAGTCACTAAAACAGCCCTCTTTGGGTTAACTAAGGCCCTTGCGGATGAAATGGCCCCAGATACTCGTGTAAATTGTATTGCTCCTGGTTTTGTGCCTACAAACTTTGCTTCATACATCACAAGAACTGCTGCTGTGAGGAAGGAGCTCGAGGACAAGACGCTACTTAAAAGGCTTGGTACAACTGGAGACATGGCTGCTACCGCTGCCTTTTTGGCATCTGATGATGCTTCTTACATTACAGGAGAAACTCTGGTGGTGGCTGGAGGGATGCCGTCAAGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000253 GO:0001101 GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004090 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005783 GO:0005789 GO:0005829 GO:0006066 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008106 GO:0008150 GO:0008152 GO:0008202 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0012505 GO:0014070 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0016651 GO:0016655 GO:0018455 GO:0019752 GO:0021700 GO:0022607 GO:0022622 GO:0030154 GO:0031907 GO:0031974 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034308 GO:0034613 GO:0034641 GO:0034754 GO:0040007 GO:0042175 GO:0042180 GO:0042221 GO:0042430 GO:0042445 GO:0042572 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051262 GO:0051641 GO:0051649 GO:0052650 GO:0055114 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071695 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080024 GO:0080026 GO:0080147 GO:0090558 GO:0090627 GO:0098827 GO:0099402 GO:1901360 GO:1901564 GO:1901615 GO:1901698 GO:1901700 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 ko04146 map00830 map01100 map04146
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

255

Amino Acids

27.05

Weight (kDa)

9.26

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 13 - 201 1.5e-44 short chain dehydrogenase
SDR PF23441 14 - 225 3e-13 SDR-like rossmann domain
KR PF08659 16 - 179 1.9e-10 KR domain
adh_short_C2 PF13561 19 - 251 1.4e-58 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05530
fragaria_vesca FvH4_3g01160
malus_domestica MD05G1355400.v1.1 MD05G1355800.v1.1 MD10G1329100.v1.1
prunus_persica Prupe.4G012900_v2.0.a1
pyrus_communis pycom10g27890
rosa_chinensis RchiOBHm_Chr5g0001721
rosa_laevigata RLG00000030962
rosa_multiflora Rmu_ssc0000237.1_g000021
rosa_roxburghii Rroxscaffold_1G00071180 Rroxscaffold_1G00074590
rosa_rugosa Rorug04G0392200
rosa_samantha Rh5AG013600 Rh5CG014600
rosa_wichuraiana Rw5G001320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AciI CCGC 5 cut(s) 54, 130, 155, 524, 684
AcvI CACGTG 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 661
AfiI CCNNNNNNNGG 1 cut(s) 504
AflII CTTAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 185, 409
AjnI CCWGG 1 cut(s) 565
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 7 cut(s) 44, 188, 349, 371, 398, 464, 628
AluI AGCT 7 cut(s) 44, 188, 349, 371, 398, 464, 628
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 1 cut(s) 663
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 3 cut(s) 97, 516, 534
ApeKI GCWGC 7 cut(s) 220, 290, 293, 395, 611, 677, 686
AspLEI GCGC 2 cut(s) 110, 175
AspS9I GGNCC 2 cut(s) 517, 535
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 629
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 630
BauI CACGAG 1 cut(s) 546
BbrPI CACGTG 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 7 cut(s) 232, 277, 280, 407, 598, 664, 673
BccI CCATC 2 cut(s) 89, 310
BceAI ACGGC 1 cut(s) 739
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 567
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 663
BfaI CTAG 1 cut(s) 766
BfoI RGCGCY 1 cut(s) 111
BfrI CTTAAG 1 cut(s) 167
BglI GCCNNNNNGGC 3 cut(s) 105, 695, 760
BisI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
BlsI GCNGC 7 cut(s) 222, 292, 295, 397, 613, 679, 688
Bme1390I CCNGG 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 2 cut(s) 517, 535
BmiI GGNNCC 2 cut(s) 109, 537
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 4 cut(s) 78, 697, 707, 741
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 2 cut(s) 687, 765
BsaAI YACGTR 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse1I ACTGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 3 cut(s) 154, 532, 756
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 2 cut(s) 115, 390
BseXI GCAGC 7 cut(s) 232, 277, 280, 407, 598, 664, 673
BsgI GTGCAG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 3 cut(s) 99, 518, 536
BshNI GGYRCC 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 630
BsiHKCI CYCGRG 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 504
BsmAI GTCTC 1 cut(s) 663
BsnI GGCC 3 cut(s) 99, 518, 536
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 2 cut(s) 15, 160
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 5 cut(s) 54, 130, 155, 524, 684
BspANI GGCC 3 cut(s) 99, 518, 536
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 109, 537
BspT107I GGYRCC 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 2 cut(s) 15, 160
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 546
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 108
BstAFI CTTAAG 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 134, 448
BstDEI CTNAG 2 cut(s) 63, 513
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 3 cut(s) 154, 532, 756
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 175
BstKTI GATC 2 cut(s) 18, 163
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 2 cut(s) 15, 160
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 6 cut(s) 105, 470, 683, 686, 695, 760
BstNI CCWGG 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 565
BstV1I GCAGC 7 cut(s) 232, 277, 280, 407, 598, 664, 673
BstV2I GAAGAC 1 cut(s) 14
BsuRI GGCC 3 cut(s) 99, 518, 536
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 67
BtsCI GGATG 3 cut(s) 154, 532, 756
Cac8I GCNNGC 2 cut(s) 134, 448
CfoI GCGC 2 cut(s) 110, 175
Cfr13I GGNCC 2 cut(s) 517, 535
CseI GACGC 1 cut(s) 649
Csp6I GTAC 1 cut(s) 660
CviAII CATG 2 cut(s) 469, 673
CviQI GTAC 1 cut(s) 660
DdeI CTNAG 2 cut(s) 63, 513
DinI GGCGCC 1 cut(s) 109
DpnI GATC 2 cut(s) 17, 162
DpnII GATC 2 cut(s) 15, 160
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 630
Eco53kI GAGCTC 1 cut(s) 628
Eco72I CACGTG 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 628
EcoO109I RGGNCCY 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 630
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 2 cut(s) 472, 676
FaiI YATR 8 cut(s) 261, 352, 377, 434, 470, 480, 595, 674
FatI CATG 2 cut(s) 468, 672
FauI CCCGC 1 cut(s) 137
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
FokI GGATG 3 cut(s) 161, 539, 763
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
FspBI CTAG 1 cut(s) 766
GlaI GCGC 2 cut(s) 109, 174
GluI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
GsuI CTGGAG 2 cut(s) 687, 765
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 99, 518, 536
HgaI GACGC 1 cut(s) 649
HhaI GCGC 2 cut(s) 110, 175
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 472, 676
Hin6I GCGC 2 cut(s) 108, 173
HinP1I GCGC 2 cut(s) 108, 173
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 2 cut(s) 186, 369
HinfI GANTC 6 cut(s) 27, 93, 195, 232, 332, 483
HpaI GTTAAC 1 cut(s) 510
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 3 cut(s) 20, 237, 703
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 1 cut(s) 510
Hpy99I CGWCG 3 cut(s) 16, 35, 119
HpyAV CCTTC 2 cut(s) 98, 616
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 144, 207
HpyCH4V TGCA 2 cut(s) 220, 253
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 470, 683, 686, 695, 760
HpyF3I CTNAG 2 cut(s) 63, 513
HpySE526I ACGT 2 cut(s) 144, 207
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 472, 676
HspAI GCGC 2 cut(s) 108, 173
KasI GGCGCC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 160
KspAI GTTAAC 1 cut(s) 510
Kzo9I GATC 2 cut(s) 15, 160
LmnI GCTCC 3 cut(s) 403, 568, 625
Lsp1109I GCAGC 7 cut(s) 232, 277, 280, 407, 598, 664, 673
LweI GCATC 4 cut(s) 78, 697, 707, 741
MaeI CTAG 1 cut(s) 766
MaeII ACGT 2 cut(s) 144, 207
MaeIII GTNAC 3 cut(s) 49, 203, 484
MalI GATC 2 cut(s) 17, 162
MboI GATC 2 cut(s) 15, 160
MboII GAAGA 5 cut(s) 19, 241, 374, 411, 421
MfeI CAATTG 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 4 cut(s) 180, 214, 441, 553
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 4 cut(s) 87, 204, 341, 492
MmeI TCCRAC 1 cut(s) 478
MseI TTAA 3 cut(s) 168, 509, 648
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 686
MspCI CTTAAG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 567
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 6 cut(s) 105, 470, 683, 686, 695, 760
NarI GGCGCC 1 cut(s) 108
NcoI CCATGG 1 cut(s) 468
NdeII GATC 2 cut(s) 15, 160
NlaIII CATG 2 cut(s) 472, 676
NlaIV GGNNCC 2 cut(s) 109, 537
NmeAIII GCCGAG 2 cut(s) 75, 112
NmuCI GTSAC 3 cut(s) 49, 203, 484
PaeR7I CTCGAG 1 cut(s) 629
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 204
PfeI GAWTC 2 cut(s) 27, 232
PkrI GCNGC 7 cut(s) 222, 292, 295, 397, 613, 679, 688
Ple19I CGATCG 1 cut(s) 18
PleI GAGTC 4 cut(s) 87, 203, 340, 491
PluTI GGCGCC 1 cut(s) 111
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
PpsI GAGTC 4 cut(s) 87, 203, 340, 491
Ppu21I YACGTR 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 565
PspCI CACGTG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 2 cut(s) 109, 537
PspPI GGNCC 2 cut(s) 517, 535
PspXI VCTCGAGB 1 cut(s) 629
PvuI CGATCG 1 cut(s) 18
RsaI GTAC 1 cut(s) 661
RsaNI GTAC 1 cut(s) 660
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 1 cut(s) 630
SaqAI TTAA 3 cut(s) 168, 509, 648
SatI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
Sau3AI GATC 2 cut(s) 15, 160
Sau96I GGNCC 2 cut(s) 517, 535
SchI GAGTC 4 cut(s) 87, 204, 341, 492
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 4 cut(s) 78, 697, 707, 741
SfoI GGCGCC 1 cut(s) 109
Sfr274I CTCGAG 1 cut(s) 629
SlaI CTCGAG 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 167, 629
SmoI CTYRAG 2 cut(s) 167, 629
Sse9I AATT 4 cut(s) 180, 214, 441, 553
SsiI CCGC 5 cut(s) 54, 130, 155, 524, 684
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 1 cut(s) 766
SstI GAGCTC 1 cut(s) 630
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 2 cut(s) 147, 210
TaqI TCGA 2 cut(s) 102, 630
TasI AATT 4 cut(s) 180, 214, 441, 553
TfiI GAWTC 2 cut(s) 27, 232
Tru1I TTAA 3 cut(s) 168, 509, 648
Tru9I TTAA 3 cut(s) 168, 509, 648
TseFI GTSAC 3 cut(s) 49, 203, 484
TseI GCWGC 7 cut(s) 220, 290, 293, 395, 611, 677, 686
Tsp45I GTSAC 3 cut(s) 49, 203, 484
TspDTI ATGAA 3 cut(s) 165, 543, 582
TspGWI ACGGA 1 cut(s) 103
Vha464I CTTAAG 1 cut(s) 167
XhoI CTCGAG 1 cut(s) 629
XspI CTAG 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.