Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000237.1

Orthogroup ID

OG0015374

Physical Location & Seq

Genomic Coordinates Forward (+)

79815 .. 81417

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000237.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggagaagacgacgatcggaaagagattcgtcggcaaagtagctctcgtcaccgcttctactcagggcatcggcttcgccatcgccgagcgactcggcctcgaaggcgcctccgtcgtcatctcctcccgcaagcagaaaaacgtggatgaagcggttgatcaacttaaagcgcaaggaattgaagctttgggagtcgtctgtcacgtgtctaatgagcagcaaaggaagaatctgatagacaagactgtgcagaaatatggaaagatagatgtcgtagtatcaaatgctgctgccaatccatcagttgagaggatattgctaacccaagagtctgttcttgacaagctatgggaaataaatgtcaaagcttctatacttcttctaaaggaagcagctcctcacttgaagaaaggttcttctgttattctcatatcctcaattgctggcttccaaccaccagcttccatggcaatgtatggagtcactaaaacagccctttttgggttaactaaggcccttgcggatgaaatggccccagatactcgtgtaaactgtattgctcctggttttgtgcctacaaactttgcttcatacatcacgagaactgctgctgtgaggaaggagctcgaggacaagacgctacttaaaaggcttggtacaactggagacatggctgctacggctgcctttttggcatctgatgatgcttcttacattacaggagaaactctggtggtggctggagggatgccgtcaaggctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000253 GO:0001101 GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004090 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005783 GO:0005789 GO:0005829 GO:0006066 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008106 GO:0008150 GO:0008152 GO:0008202 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0012505 GO:0014070 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0016651 GO:0016655 GO:0018455 GO:0019752 GO:0021700 GO:0022607 GO:0022622 GO:0030154 GO:0031907 GO:0031974 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034308 GO:0034613 GO:0034641 GO:0034754 GO:0040007 GO:0042175 GO:0042180 GO:0042221 GO:0042430 GO:0042445 GO:0042572 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051262 GO:0051641 GO:0051649 GO:0052650 GO:0055114 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071695 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080024 GO:0080026 GO:0080147 GO:0090558 GO:0090627 GO:0098827 GO:0099402 GO:1901360 GO:1901564 GO:1901615 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 ko04146 map00830 map01100 map04146

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

255

Amino Acids

27.06

Weight (kDa)

9.13

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05530
fragaria_vesca	FvH4_3g01160
malus_domestica	MD05G1355400.v1.1 MD05G1355800.v1.1 MD10G1329100.v1.1
prunus_persica	Prupe.4G012900_v2.0.a1
pyrus_communis	pycom10g27890
rosa_chinensis	RchiOBHm_Chr5g0001721
rosa_laevigata	RLG00000030962
rosa_multiflora	Rmu_ssc0000237.1_g000021
rosa_roxburghii	Rroxscaffold_1G00071180 Rroxscaffold_1G00074590
rosa_rugosa	Rorug04G0392200
rosa_samantha	Rh5AG013600 Rh5CG014600
rosa_wichuraiana	Rw5G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	4 cut(s)	54, 130, 155, 524
AcvI	CACGTG	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	1 cut(s)	504
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	185, 409
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	7 cut(s)	44, 188, 349, 371, 398, 464, 628
AluI	AGCT	7 cut(s)	44, 188, 349, 371, 398, 464, 628
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	1 cut(s)	663
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	3 cut(s)	97, 516, 534
ApeKI	GCWGC	7 cut(s)	220, 290, 293, 395, 611, 677, 686
AspLEI	GCGC	2 cut(s)	110, 175
AspS9I	GGNCC	2 cut(s)	517, 535
AsuHPI	GGTGA	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	629
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	630
BauI	CACGAG	2 cut(s)	546, 601
BbrPI	CACGTG	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	7 cut(s)	232, 277, 280, 407, 598, 664, 673
BccI	CCATC	2 cut(s)	89, 310
BceAI	ACGGC	2 cut(s)	699, 739
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	567
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	663
BfaI	CTAG	1 cut(s)	766
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	3 cut(s)	105, 695, 760
BisI	GCNGC	7 cut(s)	221, 291, 294, 396, 612, 678, 687
BlsI	GCNGC	7 cut(s)	222, 292, 295, 397, 613, 679, 688
Bme1390I	CCNGG	1 cut(s)	567
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	517, 535
BmiI	GGNNCC	2 cut(s)	109, 537
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	4 cut(s)	78, 697, 707, 741
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	2 cut(s)	687, 765
BsaAI	YACGTR	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	1 cut(s)	670
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	3 cut(s)	154, 532, 756
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	670
BseRI	GAGGAG	2 cut(s)	115, 390
BseXI	GCAGC	7 cut(s)	232, 277, 280, 407, 598, 664, 673
BsgI	GTGCAG	1 cut(s)	272
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	99, 518, 536
BshNI	GGYRCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	630
BsiHKCI	CYCGRG	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	1 cut(s)	663
BsnI	GGCC	3 cut(s)	99, 518, 536
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	15, 160
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	4 cut(s)	54, 130, 155, 524
BspANI	GGCC	3 cut(s)	99, 518, 536
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	109, 537
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	670
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	2 cut(s)	15, 160
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	2 cut(s)	546, 601
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	2 cut(s)	546, 601
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	2 cut(s)	250, 557
BstACI	GRCGYC	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	134, 448
BstDEI	CTNAG	2 cut(s)	63, 513
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	154, 532, 756
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 175
BstKTI	GATC	2 cut(s)	18, 163
BstMAI	GTCTC	1 cut(s)	663
BstMBI	GATC	2 cut(s)	15, 160
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 470, 683, 686, 695, 760
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstV1I	GCAGC	7 cut(s)	232, 277, 280, 407, 598, 664, 673
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	99, 518, 536
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	154, 532, 756
Cac8I	GCNNGC	2 cut(s)	134, 448
CfoI	GCGC	2 cut(s)	110, 175
Cfr13I	GGNCC	2 cut(s)	517, 535
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	1 cut(s)	660
CviAII	CATG	2 cut(s)	469, 673
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	2 cut(s)	63, 513
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	2 cut(s)	17, 162
DpnII	GATC	2 cut(s)	15, 160
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	630
Eco53kI	GAGCTC	1 cut(s)	628
Eco72I	CACGTG	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	629
EcoICRI	GAGCTC	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	630
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	2 cut(s)	472, 676
FaiI	YATR	8 cut(s)	261, 352, 377, 434, 470, 480, 595, 674
FatI	CATG	2 cut(s)	468, 672
FauI	CCCGC	1 cut(s)	137
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	7 cut(s)	221, 291, 294, 396, 612, 678, 687
FokI	GGATG	3 cut(s)	161, 539, 763
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	7 cut(s)	221, 291, 294, 396, 612, 678, 687
FspBI	CTAG	1 cut(s)	766
GlaI	GCGC	2 cut(s)	109, 174
GluI	GCNGC	7 cut(s)	221, 291, 294, 396, 612, 678, 687
GsuI	CTGGAG	2 cut(s)	687, 765
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	99, 518, 536
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	2 cut(s)	110, 175
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	472, 676
Hin6I	GCGC	2 cut(s)	108, 173
HinP1I	GCGC	2 cut(s)	108, 173
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HindIII	AAGCTT	2 cut(s)	186, 369
HinfI	GANTC	6 cut(s)	27, 93, 195, 232, 332, 483
HpaI	GTTAAC	1 cut(s)	510
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	510, 553
Hpy188I	TCNGA	3 cut(s)	20, 237, 703
Hpy188III	TCNNGA	2 cut(s)	341, 601
Hpy8I	GTNNAC	2 cut(s)	510, 553
Hpy99I	CGWCG	3 cut(s)	16, 35, 119
HpyAV	CCTTC	2 cut(s)	98, 616
HpyCH4III	ACNGT	2 cut(s)	250, 557
HpyCH4IV	ACGT	2 cut(s)	144, 207
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 470, 683, 686, 695, 760
HpyF3I	CTNAG	2 cut(s)	63, 513
HpySE526I	ACGT	2 cut(s)	144, 207
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	472, 676
HspAI	GCGC	2 cut(s)	108, 173
KasI	GGCGCC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	160
KspAI	GTTAAC	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	15, 160
LmnI	GCTCC	3 cut(s)	403, 568, 625
Lsp1109I	GCAGC	7 cut(s)	232, 277, 280, 407, 598, 664, 673
LweI	GCATC	4 cut(s)	78, 697, 707, 741
MaeI	CTAG	1 cut(s)	766
MaeII	ACGT	2 cut(s)	144, 207
MaeIII	GTNAC	3 cut(s)	49, 203, 484
MalI	GATC	2 cut(s)	17, 162
MboI	GATC	2 cut(s)	15, 160
MboII	GAAGA	5 cut(s)	19, 241, 374, 411, 421
MfeI	CAATTG	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	2 cut(s)	180, 441
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	4 cut(s)	87, 204, 341, 492
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	9 cut(s)	110, 121, 136, 306, 411, 448, 612, 625, 740
MseI	TTAA	3 cut(s)	168, 509, 648
MslI	CAYNNNNRTG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	567
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	6 cut(s)	105, 470, 683, 686, 695, 760
NarI	GGCGCC	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	15, 160
NlaIII	CATG	2 cut(s)	472, 676
NlaIV	GGNNCC	2 cut(s)	109, 537
NmeAIII	GCCGAG	2 cut(s)	75, 112
NmuCI	GTSAC	3 cut(s)	49, 203, 484
PaeR7I	CTCGAG	1 cut(s)	629
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 204
PfeI	GAWTC	2 cut(s)	27, 232
PkrI	GCNGC	7 cut(s)	222, 292, 295, 397, 613, 679, 688
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	4 cut(s)	87, 203, 340, 491
PluTI	GGCGCC	1 cut(s)	111
PmaCI	CACGTG	1 cut(s)	208
PmlI	CACGTG	1 cut(s)	208
PpsI	GAGTC	4 cut(s)	87, 203, 340, 491
Ppu21I	YACGTR	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	565
PspCI	CACGTG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	109, 537
PspPI	GGNCC	2 cut(s)	517, 535
PspXI	VCTCGAGB	1 cut(s)	629
PvuI	CGATCG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	168, 509, 648
SatI	GCNGC	7 cut(s)	221, 291, 294, 396, 612, 678, 687
Sau3AI	GATC	2 cut(s)	15, 160
Sau96I	GGNCC	2 cut(s)	517, 535
SchI	GAGTC	4 cut(s)	87, 204, 341, 492
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	630
SfaNI	GCATC	4 cut(s)	78, 697, 707, 741
SfoI	GGCGCC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	629
SlaI	CTCGAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	2 cut(s)	180, 441
SsiI	CCGC	4 cut(s)	54, 130, 155, 524
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	766
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	250, 557
TaiI	ACGT	2 cut(s)	147, 210
TaqI	TCGA	2 cut(s)	102, 630
TasI	AATT	2 cut(s)	180, 441
TfiI	GAWTC	2 cut(s)	27, 232
Tru1I	TTAA	3 cut(s)	168, 509, 648
Tru9I	TTAA	3 cut(s)	168, 509, 648
TseFI	GTSAC	3 cut(s)	49, 203, 484
TseI	GCWGC	7 cut(s)	220, 290, 293, 395, 611, 677, 686
Tsp45I	GTSAC	3 cut(s)	49, 203, 484
TspDTI	ATGAA	3 cut(s)	165, 543, 582
TspGWI	ACGGA	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	629
XspI	CTAG	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.