Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014923

Physical Location & Seq

Genomic Coordinates Reverse (-)

4480934 .. 4488413

Gene Structure 7480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G090100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2550 bp

ATGGCACTTGTTATGAACAGAGATTCACCAGGAAGTAGTAGCAAGCAAATGGATTCAAGCAAGTATGTACGGTACACACCAGAGCAGGTTGAGGCCTTGGAGAGAGTCTACTCCGAATGCCCAAAGCCTAGCTCTTTGAGAAGGCAGCAGCTGATTAGAGAGTGTCCTATTCTCTCTAACATTGAGCCTAAGCAGATCAAAGTCTGGTTCCAAAACCGCAGATGCCGGGAGAAGCAGAGGAAGGAATCTTCTCGACTCCAGACAGTGAATAGAAAGCTGACTGCAATGAATAAGCTGTTAATGGAAGAAAATGACCGCCTACAGAAGCAGGTCTCTCATTTGGTGTATGAGAATGGATTTATGCGACAGCAACTGCATAGTGCATCTGGAACGACCACAGACAATAGCTGCGAGTCTGTGGTCATGAGTGGTCAGCACCAACAACAGCAAAACCCAACACCTCAGCATCCGCAAAGGGATGCTAACAACCCAGCTGGTCTTCTTGCAATAGCGGAGGAGACCTTGGCAGAGTTCCTTTCTAAGGCTACCGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTCGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCACGAGCTTGCGGTCTTGTGAGCCTAGAGCCCACAAAGGTCGCTGAAATCCTCAAAGATCGTACATCATGGTTTCGGGATTGCCGTTGCCTTGATGTATTAAGTCTAATCCCTGCTGGAAATGGTGGGACAATTGAGCTCACGTACATGCAGACTTATGCACCCACAACATTGGCTGCGGCACGTGACTTTTGGACACTGAGATATACTACAAGTTTGGAAGATGGCAGTCTTGTGGTATGTGAGAGGTCGTTAACCTCTTCAACTGGTGGCCCAACGGGGCCTCCATCTGCAAGTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATCTTATCCGACCTTGTGAGGGTGGTGGTTCCATTATCAACATTGTTGATCATGTTGATCTAGATGCCTGGAGTGTTCCTGAAGTTCTCAGGTCCCTTTATGAATCATCCAAAATCCTTGCTCAGAAAATGACTATTTCTGCCCTGCGACACATACGACAGATAGCTCAAGAGACTAGTGGAGAAATTCAGTACGGTGGAGGTCGCCAGCCTGCTGTTCTGAGGACATTTTGTCAGAGACTCTGCAGAGGGTTTAACGATGCTGTCAATGGGTTTGCGGATGACGGTTGGTCACTTATGGGTAGTGACGGTGTGGAGGATGTGACAATTACCATTAACTCATCGCCAAACAAGTTTCTTGGTTCCCAGTATAACGCATCAATTTTCCCCACTTTTGGAGGAGGGGTGCTGTGTGCTAAGGCATCAATGCTGTTGCAGAGTGTTCCCCCGGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGCTCAGAATGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGTCTTAAAGCTAGCCCATATGCAGTTCCTTGTGCAAGGCCAGGCGGCTTCCCGAGCAGCCAGGTTATCTTACCTCTTGCACAAACTGTGGAGAATGAGGAGTTTCTAGAGGTAGTTCGCCTAGAGGGTCATGCTTTCTCTCCTGAGGATGTTGCTTTGGCGCGGGATATGTACTTATTACAGTTGTGCAGTGGAGTTGATGAAAATGCAGTGGGTTCCTGTGCTCAGCTTGTCTTTGCACCTATTGATGAATCGTTTGCTGATGATGCTCCTCTGTTACCATCTGGTTTTCATGTCATACCATTGGATCCCAAAACAGATGGACCTACTGCAAATCGCACATTGGATTTGGCCTCTACGCTTGAAGTAGGACCGAGTGGTTCTCGTCCTGTTAATGAGGCTGATGGCAATAGTTACAACCTTAGGTCTGTGCTAACCATTGCCTTCCAATTCACCTTTGAGAACCATTTGCGAGACAATGTGGCTGCTATGGCTCGACAGTATGTGCGTAGTGTTGTAAGCTCTGTTCAAAGGGTAGCTATGGCTATTGCCCCTTCCCGGCTCAGCTCCCAAATGGTACCAAAACCCCTTCCTGGATCTCCTGAGGCTCATACTTTGGCACGATGGATTTGCAGAAGCTACAGGATCCACACTGGAGCAGAGCTCTTTCGAGTCGACTCCCCATCTGGGGATGCTGTTTTGAAGCAACTTTGGCACCATTCAGATGCAATCATGTGCTGCTCTGTGAAAACGAATGCATCTCCAGTGTTCACCTTTGCCAACCAGGCTGGACTTGACATGCTTGAAACTACTCTTGTGGCCCTCCAGGATATCATGCTTGACAAGATTCTAGATGAAGCTGGACGGAAAATTCTCTGCTCGGAGTTCTCCAAAATCATGCAGCAGGGGTTCGCGTATCTGCCAGCAGGATTATGTGCCTCCAGCATGGGTAGGCCAGTGTCCTATGATCAAGCTGTTGCATGGAAAGTTGTTAATGACGATGATTCGAATCACTGCCTGGCATTCATGTTCATGAGCTGGTCCTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009799 GO:0009855 GO:0009880 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080060 GO:0080090 GO:0090421 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

850

Amino Acids

93.02

Weight (kDa)

5.92

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30490 AT2G34710
fragaria_vesca	FvH4_3g10070 FvH4_3g10070
malus_domestica	MD05G1273700.v1.1 MD10G1253500.v1.1
prunus_persica	Prupe.4G090100_v2.0.a1
pyrus_communis	pycom05g25510 pycom10g20910
rosa_chinensis	RchiOBHm_Chr5g0015931
rosa_laevigata	RLG00000032232
rosa_multiflora	Rmu_sc0001878.1_g000010
rosa_roxburghii	Rroxscaffold_1G00060660
rosa_rugosa	Rorug05G0030500
rosa_samantha	Rh5BG122800
rosa_wichuraiana	Rw5G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	76, 319
Acc65I	GGTACC	1 cut(s)	2074
AccB1I	GGYRCC	2 cut(s)	2074, 2211
AccI	GTMKAC	3 cut(s)	108, 561, 2172
AccII	CGCG	2 cut(s)	1660, 2411
AccIII	TCCGGA	1 cut(s)	595
AclWI	GGATC	5 cut(s)	1799, 1812, 2101, 2137, 2150
AcsI	RAATTY	2 cut(s)	1158, 2367
AcuI	CTGAAG	1 cut(s)	1074
AcvI	CACGTG	1 cut(s)	830
AfaI	GTAC	7 cut(s)	69, 74, 709, 791, 1166, 1670, 2076
AfiI	CCNNNNNNNGG	7 cut(s)	541, 992, 1367, 2055, 2090, 2184, 2185
AgsI	TTSAA	6 cut(s)	57, 909, 1862, 2027, 2200, 2303
AhdI	GACNNNNNGTC	2 cut(s)	1203, 1261
AhlI	ACTAGT	1 cut(s)	1148
AjnI	CCWGG	9 cut(s)	28, 589, 1040, 1537, 1557, 2089, 2280, 2322, 2514
Alw21I	GWGCWC	3 cut(s)	786, 1723, 2163
Alw26I	GTCTC	5 cut(s)	337, 512, 1139, 1204, 1965
AlwI	GGATC	5 cut(s)	1799, 1812, 2101, 2137, 2150
AlwNI	CAGNNNCTG	2 cut(s)	151, 373
Ama87I	CYCGRG	1 cut(s)	1549
Aor13HI	TCCGGA	1 cut(s)	595
AoxI	GGCC	7 cut(s)	93, 916, 926, 1535, 1848, 2316, 2450
ApoI	RAATTY	2 cut(s)	1158, 2367
Asp718I	GGTACC	1 cut(s)	2074
AspLEI	GCGC	1 cut(s)	1660
AspS9I	GGNCC	9 cut(s)	568, 593, 917, 926, 1065, 1820, 1868, 2317, 2538
AsuC2I	CCSGG	3 cut(s)	227, 1421, 2056
AsuHPI	GGTGA	3 cut(s)	18, 1942, 2260
AsuII	TTCGAA	1 cut(s)	2504
AsuNHI	GCTAGC	1 cut(s)	1508
AvaI	CYCGRG	1 cut(s)	1549
AvaII	GGWCC	6 cut(s)	568, 593, 1065, 1820, 1868, 2538
AxyI	CCTNAGG	3 cut(s)	1641, 1919, 2100
BamHI	GGATCC	2 cut(s)	1804, 2142
BanI	GGYRCC	2 cut(s)	2074, 2211
BanII	GRGCYC	3 cut(s)	678, 786, 2163
BauI	CACGAG	1 cut(s)	648
BbrPI	CACGTG	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	491
Bbv12I	GWGCWC	3 cut(s)	786, 1723, 2163
BbvCI	CCTCAGC	1 cut(s)	462
BccI	CCATC	7 cut(s)	863, 940, 1786, 1811, 1895, 2115, 2188
BceAI	ACGGC	1 cut(s)	714
BcgI	CGANNNNNNTGC	2 cut(s)	2109, 2143
BciT130I	CCWGG	9 cut(s)	30, 591, 1042, 1539, 1559, 2091, 2282, 2324, 2516
BclI	TGATCA	2 cut(s)	1021, 2464
BcnI	CCSGG	3 cut(s)	227, 1421, 2056
BcoDI	GTCTC	5 cut(s)	337, 512, 1139, 1204, 1965
BcuI	ACTAGT	1 cut(s)	1148
BfaI	CTAG	9 cut(s)	129, 671, 966, 1034, 1149, 1509, 1604, 1619, 2348
BfmI	CTRYAG	4 cut(s)	320, 631, 1216, 2137
BfuAI	ACCTGC	2 cut(s)	76, 319
BglI	GCCNNNNNGGC	1 cut(s)	2282
BlpI	GCTNAGC	2 cut(s)	1722, 2060
Bme18I	GGWCC	6 cut(s)	568, 593, 1065, 1820, 1868, 2538
BmeRI	GACNNNNNGTC	2 cut(s)	1203, 1261
BmeT110I	CYCGRG	1 cut(s)	1549
BmgT120I	GGNCC	9 cut(s)	568, 593, 917, 926, 1065, 1820, 1868, 2317, 2538
BmrI	ACTGGG	2 cut(s)	574, 1333
BmtI	GCTAGC	1 cut(s)	1512
BmuI	ACTGGG	2 cut(s)	574, 1333
BpiI	GAAGAC	1 cut(s)	491
BplI	GAGNNNNNCTC	6 cut(s)	1439, 1471, 1864, 1896, 2145, 2177
BpmI	CTGGAG	6 cut(s)	242, 1063, 2172, 2244, 2306, 2422
Bpu10I	CCTNAGC	3 cut(s)	189, 462, 1389
Bpu1102I	GCTNAGC	2 cut(s)	1722, 2060
Bpu14I	TTCGAA	1 cut(s)	2504
BpuEI	CTTGAG	1 cut(s)	1125
BpuMI	CCSGG	3 cut(s)	227, 1421, 2056
BsaAI	YACGTR	2 cut(s)	789, 830
BsaBI	GATNNNNATC	1 cut(s)	2505
BsaI	GGTCTC	2 cut(s)	337, 512
BsaJI	CCNNGG	3 cut(s)	96, 522, 1419
BsaWI	WCCGGW	2 cut(s)	548, 595
BsaXI	ACNNNNNCTCC	4 cut(s)	913, 943, 1362, 1392
Bsc4I	CCNNNNNNNGG	7 cut(s)	541, 992, 1367, 2055, 2090, 2184, 2185
Bse1I	ACTGG	6 cut(s)	569, 916, 1339, 2155, 2261, 2453
Bse21I	CCTNAGG	3 cut(s)	1641, 1919, 2100
Bse3DI	GCAATG	2 cut(s)	291, 1935
Bse8I	GATNNNNATC	1 cut(s)	2505
BseAI	TCCGGA	1 cut(s)	595
BseBI	CCWGG	9 cut(s)	30, 591, 1042, 1539, 1559, 2091, 2282, 2324, 2516
BseDI	CCNNGG	3 cut(s)	96, 522, 1419
BseGI	GGATG	8 cut(s)	466, 484, 588, 1079, 1258, 1297, 1651, 2194
BseJI	GATNNNNATC	1 cut(s)	2505
BseLI	CCNNNNNNNGG	7 cut(s)	541, 992, 1367, 2055, 2090, 2184, 2185
BseMI	GCAATG	2 cut(s)	291, 1935
BseNI	ACTGG	6 cut(s)	569, 916, 1339, 2155, 2261, 2453
BseRI	GAGGAG	4 cut(s)	530, 1386, 1610, 1758
BseYI	CCCAGC	1 cut(s)	490
BsgI	GTGCAG	1 cut(s)	1705
Bsh1236I	CGCG	2 cut(s)	1660, 2411
BshFI	GGCC	7 cut(s)	95, 918, 928, 1537, 1850, 2318, 2452
BshNI	GGYRCC	2 cut(s)	2074, 2211
BsiHKAI	GWGCWC	3 cut(s)	786, 1723, 2163
BsiHKCI	CYCGRG	1 cut(s)	1549
BsiSI	CCGG	5 cut(s)	226, 549, 596, 1421, 2056
BslFI	GGGAC	2 cut(s)	787, 1051
BslI	CCNNNNNNNGG	7 cut(s)	541, 992, 1367, 2055, 2090, 2184, 2185
BsmAI	GTCTC	5 cut(s)	337, 512, 1139, 1204, 1965
BsmFI	GGGAC	2 cut(s)	787, 1051
BsmI	GAATGC	3 cut(s)	122, 2257, 2519
BsnI	GGCC	7 cut(s)	95, 918, 928, 1537, 1850, 2318, 2452
Bso31I	GGTCTC	2 cut(s)	337, 512
BsoBI	CYCGRG	1 cut(s)	1549
Bsp119I	TTCGAA	1 cut(s)	2504
Bsp1286I	GDGCHC	4 cut(s)	678, 786, 1723, 2163
Bsp13I	TCCGGA	1 cut(s)	595
Bsp143I	GATC	8 cut(s)	195, 703, 1021, 1030, 1804, 2093, 2142, 2464
Bsp1720I	GCTNAGC	2 cut(s)	1722, 2060
BspANI	GGCC	7 cut(s)	95, 918, 928, 1537, 1850, 2318, 2452
BspEI	TCCGGA	1 cut(s)	595
BspFNI	CGCG	2 cut(s)	1660, 2411
BspHI	TCATGA	2 cut(s)	423, 2529
BspMAI	CTGCAG	2 cut(s)	635, 1220
BspMI	ACCTGC	2 cut(s)	76, 319
BspOI	GCTAGC	1 cut(s)	1512
BspPI	GGATC	5 cut(s)	1799, 1812, 2101, 2137, 2150
BspT104I	TTCGAA	1 cut(s)	2504
BspT107I	GGYRCC	2 cut(s)	2074, 2211
BspTNI	GGTCTC	2 cut(s)	337, 512
BsrDI	GCAATG	2 cut(s)	291, 1935
BsrI	ACTGG	6 cut(s)	569, 916, 1339, 2155, 2261, 2453
BssECI	CCNNGG	3 cut(s)	96, 522, 1419
BssMI	GATC	8 cut(s)	195, 703, 1021, 1030, 1804, 2093, 2142, 2464
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	2 cut(s)	96, 522
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	9 cut(s)	30, 591, 1042, 1539, 1559, 2091, 2282, 2324, 2516
Bst4CI	ACNGT	8 cut(s)	72, 265, 1169, 1259, 1283, 1585, 1680, 1998
Bst6I	CTCTTC	1 cut(s)	910
BstAPI	GCANNNNNTGC	1 cut(s)	1490
BstBAI	YACGTR	2 cut(s)	789, 830
BstBI	TTCGAA	1 cut(s)	2504
BstC8I	GCNNGC	6 cut(s)	44, 655, 1181, 1185, 1510, 2421
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	8 cut(s)	466, 484, 588, 1079, 1258, 1297, 1651, 2194
BstFNI	CGCG	2 cut(s)	1660, 2411
BstHHI	GCGC	1 cut(s)	1660
BstKTI	GATC	8 cut(s)	198, 706, 1024, 1033, 1807, 2096, 2145, 2467
BstMAI	GTCTC	5 cut(s)	337, 512, 1139, 1204, 1965
BstMBI	GATC	8 cut(s)	195, 703, 1021, 1030, 1804, 2093, 2142, 2464
BstMWI	GCNNNNNNNGC	7 cut(s)	650, 1490, 1551, 1763, 1988, 2209, 2282
BstNI	CCWGG	9 cut(s)	30, 591, 1042, 1539, 1559, 2091, 2282, 2324, 2516
BstNSI	RCATGY	3 cut(s)	796, 1500, 2299
BstSFI	CTRYAG	4 cut(s)	320, 631, 1216, 2137
BstUI	CGCG	2 cut(s)	1660, 2411
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	3 cut(s)	1804, 2093, 2142
BstXI	CCANNNNNNTGG	2 cut(s)	578, 817
BstYI	RGATCY	3 cut(s)	1804, 2093, 2142
Bsu36I	CCTNAGG	3 cut(s)	1641, 1919, 2100
BsuRI	GGCC	7 cut(s)	95, 918, 928, 1537, 1850, 2318, 2452
BtgZI	GCGATG	2 cut(s)	1299, 1436
BtsCI	GGATG	8 cut(s)	466, 484, 588, 1079, 1258, 1297, 1651, 2194
BtsI	GCAGTG	4 cut(s)	640, 1693, 1713, 2509
BtsIMutI	CAGTG	9 cut(s)	270, 640, 842, 1693, 1713, 2148, 2268, 2460, 2509
BveI	ACCTGC	2 cut(s)	76, 319
Cac8I	GCNNGC	6 cut(s)	44, 655, 1181, 1185, 1510, 2421
CaiI	CAGNNNCTG	2 cut(s)	151, 373
CciI	TCATGA	2 cut(s)	423, 2529
CfoI	GCGC	1 cut(s)	1660
Cfr13I	GGNCC	9 cut(s)	568, 593, 917, 926, 1065, 1820, 1868, 2317, 2538
Csp6I	GTAC	7 cut(s)	68, 73, 708, 790, 1165, 1669, 2075
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviQI	GTAC	7 cut(s)	68, 73, 708, 790, 1165, 1669, 2075
DpnI	GATC	8 cut(s)	197, 705, 1023, 1032, 1806, 2095, 2144, 2466
DpnII	GATC	8 cut(s)	195, 703, 1021, 1030, 1804, 2093, 2142, 2464
DriI	GACNNNNNGTC	2 cut(s)	1203, 1261
Eam1104I	CTCTTC	1 cut(s)	910
Eam1105I	GACNNNNNGTC	2 cut(s)	1203, 1261
EarI	CTCTTC	1 cut(s)	910
Ecl136II	GAGCTC	2 cut(s)	784, 2161
Eco130I	CCWWGG	2 cut(s)	96, 522
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	3 cut(s)	678, 786, 2163
Eco31I	GGTCTC	2 cut(s)	337, 512
Eco32I	GATATC	1 cut(s)	2329
Eco47I	GGWCC	6 cut(s)	568, 593, 1065, 1820, 1868, 2538
Eco53kI	GAGCTC	2 cut(s)	784, 2161
Eco57I	CTGAAG	1 cut(s)	1074
Eco72I	CACGTG	1 cut(s)	830
Eco81I	CCTNAGG	3 cut(s)	1641, 1919, 2100
Eco88I	CYCGRG	1 cut(s)	1549
EcoICRI	GAGCTC	2 cut(s)	784, 2161
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoO109I	RGGNCCY	2 cut(s)	926, 1065
EcoRII	CCWGG	9 cut(s)	28, 589, 1040, 1537, 1557, 2089, 2280, 2322, 2514
EcoRV	GATATC	1 cut(s)	2329
EcoT14I	CCWWGG	2 cut(s)	96, 522
EcoT22I	ATGCAT	2 cut(s)	1486, 2257
EcoT38I	GRGCYC	3 cut(s)	678, 786, 2163
ErhI	CCWWGG	2 cut(s)	96, 522
FaqI	GGGAC	2 cut(s)	787, 1051
FauI	CCCGC	2 cut(s)	632, 1653
FauNDI	CATATG	1 cut(s)	1516
FbaI	TGATCA	2 cut(s)	1021, 2464
FblI	GTMKAC	3 cut(s)	108, 561, 2172
FokI	GGATG	8 cut(s)	453, 491, 595, 1066, 1265, 1304, 1658, 2201
FriOI	GRGCYC	3 cut(s)	678, 786, 2163
FspBI	CTAG	9 cut(s)	129, 671, 966, 1034, 1149, 1509, 1604, 1619, 2348
GlaI	GCGC	1 cut(s)	1659
GsaI	CCCAGC	1 cut(s)	494
GsuI	CTGGAG	6 cut(s)	242, 1063, 2172, 2244, 2306, 2422
HaeIII	GGCC	7 cut(s)	95, 918, 928, 1537, 1850, 2318, 2452
HapII	CCGG	5 cut(s)	226, 549, 596, 1421, 2056
HhaI	GCGC	1 cut(s)	1660
Hin6I	GCGC	1 cut(s)	1658
HinP1I	GCGC	1 cut(s)	1658
HincII	GTYRAC	3 cut(s)	562, 900, 2173
HindII	GTYRAC	3 cut(s)	562, 900, 2173
HpaI	GTTAAC	1 cut(s)	900
HpaII	CCGG	5 cut(s)	226, 549, 596, 1421, 2056
HphI	GGTGA	3 cut(s)	18, 1942, 2260
Hpy166II	GTNNAC	6 cut(s)	75, 109, 562, 900, 2173, 2268
Hpy188I	TCNGA	9 cut(s)	115, 983, 1098, 1194, 1209, 1443, 1459, 2221, 2380
Hpy8I	GTNNAC	6 cut(s)	75, 109, 562, 900, 2173, 2268
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	5 cut(s)	135, 235, 1951, 2061, 2096
HpyCH4III	ACNGT	8 cut(s)	72, 265, 1169, 1259, 1283, 1585, 1680, 1998
HpyCH4IV	ACGT	2 cut(s)	788, 829
HpyF10VI	GCNNNNNNNGC	7 cut(s)	650, 1490, 1551, 1763, 1988, 2209, 2282
HpySE526I	ACGT	2 cut(s)	788, 829
HspAI	GCGC	1 cut(s)	1658
Kpn2I	TCCGGA	1 cut(s)	595
KpnI	GGTACC	1 cut(s)	2078
Ksp22I	TGATCA	2 cut(s)	1021, 2464
KspAI	GTTAAC	1 cut(s)	900
Kzo9I	GATC	8 cut(s)	195, 703, 1021, 1030, 1804, 2093, 2142, 2464
LmnI	GCTCC	4 cut(s)	1447, 1771, 2069, 2153
MaeI	CTAG	9 cut(s)	129, 671, 966, 1034, 1149, 1509, 1604, 1619, 2348
MaeII	ACGT	2 cut(s)	788, 829
MaeIII	GTNAC	6 cut(s)	830, 1263, 1277, 1294, 1773, 1910
MalI	GATC	8 cut(s)	197, 705, 1023, 1032, 1806, 2095, 2144, 2466
MboI	GATC	8 cut(s)	195, 703, 1021, 1030, 1804, 2093, 2142, 2464
MboII	GAAGA	5 cut(s)	240, 317, 491, 878, 897
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	3 cut(s)	1804, 2093, 2142
MhlI	GDGCHC	4 cut(s)	678, 786, 1723, 2163
MluCI	AATT	6 cut(s)	777, 1158, 1299, 1353, 1946, 2367
MlyI	GAGTC	6 cut(s)	114, 249, 422, 1206, 2168, 2178
MmeI	TCCRAC	1 cut(s)	1006
Mph1103I	ATGCAT	2 cut(s)	1486, 2257
MroI	TCCGGA	1 cut(s)	595
MseI	TTAA	8 cut(s)	299, 746, 899, 1227, 1308, 1503, 1890, 2490
MslI	CAYNNNNRTG	3 cut(s)	791, 2220, 2528
MspA1I	CMGCKG	2 cut(s)	151, 494
MspI	CCGG	5 cut(s)	226, 549, 596, 1421, 2056
MunI	CAATTG	1 cut(s)	777
Mva1269I	GAATGC	3 cut(s)	122, 2257, 2519
MvaI	CCWGG	9 cut(s)	30, 591, 1042, 1539, 1559, 2091, 2282, 2324, 2516
MvnI	CGCG	2 cut(s)	1660, 2411
MwoI	GCNNNNNNNGC	7 cut(s)	650, 1490, 1551, 1763, 1988, 2209, 2282
NciI	CCSGG	3 cut(s)	227, 1421, 2056
NdeI	CATATG	1 cut(s)	1516
NdeII	GATC	8 cut(s)	195, 703, 1021, 1030, 1804, 2093, 2142, 2464
NheI	GCTAGC	1 cut(s)	1508
NmuCI	GTSAC	4 cut(s)	830, 1263, 1277, 1294
NsiI	ATGCAT	2 cut(s)	1486, 2257
NspI	RCATGY	3 cut(s)	796, 1500, 2299
NspV	TTCGAA	1 cut(s)	2504
PagI	TCATGA	2 cut(s)	423, 2529
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	727
PctI	GAATGC	3 cut(s)	122, 2257, 2519
PflFI	GACNNNGTC	1 cut(s)	566
PfoI	TCCNGGA	2 cut(s)	2089, 2322
PleI	GAGTC	6 cut(s)	113, 249, 421, 1206, 2168, 2177
PmaCI	CACGTG	1 cut(s)	830
PmlI	CACGTG	1 cut(s)	830
PpsI	GAGTC	6 cut(s)	113, 249, 421, 1206, 2168, 2177
Ppu21I	YACGTR	2 cut(s)	789, 830
PpuMI	RGGWCCY	1 cut(s)	1065
Psp124BI	GAGCTC	2 cut(s)	786, 2163
Psp5II	RGGWCCY	1 cut(s)	1065
Psp6I	CCWGG	9 cut(s)	28, 589, 1040, 1537, 1557, 2089, 2280, 2322, 2514
PspCI	CACGTG	1 cut(s)	830
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	9 cut(s)	28, 589, 1040, 1537, 1557, 2089, 2280, 2322, 2514
PspPI	GGNCC	9 cut(s)	568, 593, 917, 926, 1065, 1820, 1868, 2317, 2538
PspPPI	RGGWCCY	1 cut(s)	1065
PsrI	GAACNNNNNNTAC	2 cut(s)	2007, 2039
PstI	CTGCAG	2 cut(s)	635, 1220
PstNI	CAGNNNCTG	2 cut(s)	151, 373
PsuI	RGATCY	3 cut(s)	1804, 2093, 2142
PsyI	GACNNNGTC	1 cut(s)	566
PvuII	CAGCTG	2 cut(s)	151, 494
RsaI	GTAC	7 cut(s)	69, 74, 709, 791, 1166, 1670, 2076
RsaNI	GTAC	7 cut(s)	68, 73, 708, 790, 1165, 1669, 2075
RseI	CAYNNNNRTG	3 cut(s)	791, 2220, 2528
SacI	GAGCTC	2 cut(s)	786, 2163
SalI	GTCGAC	2 cut(s)	560, 2171
SaqAI	TTAA	8 cut(s)	299, 746, 899, 1227, 1308, 1503, 1890, 2490
Sau3AI	GATC	8 cut(s)	195, 703, 1021, 1030, 1804, 2093, 2142, 2464
Sau96I	GGNCC	9 cut(s)	568, 593, 917, 926, 1065, 1820, 1868, 2317, 2538
SchI	GAGTC	6 cut(s)	114, 249, 422, 1206, 2168, 2178
SduI	GDGCHC	4 cut(s)	678, 786, 1723, 2163
SfcI	CTRYAG	4 cut(s)	320, 631, 1216, 2137
SfuI	TTCGAA	1 cut(s)	2504
SinI	GGWCC	6 cut(s)	568, 593, 1065, 1820, 1868, 2538
SmiMI	CAYNNNNRTG	3 cut(s)	791, 2220, 2528
SmlI	CTYRAG	1 cut(s)	1140
SmoI	CTYRAG	1 cut(s)	1140
SpeI	ACTAGT	1 cut(s)	1148
Sse9I	AATT	6 cut(s)	777, 1158, 1299, 1353, 1946, 2367
SseBI	AGGCCT	1 cut(s)	95
SspMI	CTAG	9 cut(s)	129, 671, 966, 1034, 1149, 1509, 1604, 1619, 2348
SstI	GAGCTC	2 cut(s)	786, 2163
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	2 cut(s)	96, 522
TaaI	ACNGT	8 cut(s)	72, 265, 1169, 1259, 1283, 1585, 1680, 1998
TaiI	ACGT	2 cut(s)	791, 832
TaqI	TCGA	6 cut(s)	253, 561, 1993, 2167, 2172, 2504
TaqII	GACCGA	1 cut(s)	1885
TasI	AATT	6 cut(s)	777, 1158, 1299, 1353, 1946, 2367
TatI	WGTACW	1 cut(s)	1668
TauI	GCSGC	2 cut(s)	827, 1545
Tru1I	TTAA	8 cut(s)	299, 746, 899, 1227, 1308, 1503, 1890, 2490
Tru9I	TTAA	8 cut(s)	299, 746, 899, 1227, 1308, 1503, 1890, 2490
TscAI	CASTG	9 cut(s)	270, 640, 849, 1693, 1713, 2155, 2268, 2460, 2516
TseFI	GTSAC	4 cut(s)	830, 1263, 1277, 1294
Tsp45I	GTSAC	4 cut(s)	830, 1263, 1277, 1294
TspGWI	ACGGA	1 cut(s)	2377
TspRI	CASTG	9 cut(s)	270, 640, 849, 1693, 1713, 2155, 2268, 2460, 2516
Tth111I	GACNNNGTC	1 cut(s)	566
VpaK11BI	GGWCC	6 cut(s)	568, 593, 1065, 1820, 1868, 2538
XagI	CCTNNNNNAGG	1 cut(s)	539
XapI	RAATTY	2 cut(s)	1158, 2367
XbaI	TCTAGA	3 cut(s)	1033, 1603, 2347
XceI	RCATGY	3 cut(s)	796, 1500, 2299
XmiI	GTMKAC	3 cut(s)	108, 561, 2172
XspI	CTAG	9 cut(s)	129, 671, 966, 1034, 1149, 1509, 1604, 1619, 2348
Zsp2I	ATGCAT	2 cut(s)	1486, 2257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.