Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014923

Physical Location & Seq

Genomic Coordinates Reverse (-)

12296914 .. 12302586

Gene Structure 5673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032232

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGGATTCAAGCAAGTATGTGAGGTACACACCAGAGCAAGTTGAGGCCTTGGAGAGGGTCTACTCTGAATGCCCAAAGCCTAGTTCTTTGAGAAGGCAGCAGCTGATTAGAGAGTGTCCTATTCTCTCTAACATTGAGCCAAAACAGATCAAAGTCTGGTTCCAGAATCGAAGATGCCGGGAAAAGCAGAGGAAGGAATCTTCTCGACTCACAACAGTGAATAGAAAGCTGTCTGCCATGAATAAGCTGTTAATGGAAGAAAATGACCGCTTACAGAAGCAAGTCTCTCATTTGGTTTATGAGAATGGATTCATGAAGCAGCAACTGCATACCGCATCTGGAACGACCACAGACAATAGCTGCGAGTCTGTGGTCATGAATGGTCAGCACCAACAACAGCACAACCCAACTCCCCAGCATCCTCAAAGGGATGCTAACAACCCAGCTGGTCTTCTAGCAATTGCGGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTCGCTGTTTCCCGCAACTCCAGTGGGGTAGCAGCACGAGCTTGCGGTCTTGTGAGCCTAGAGCCCACAAAGGTCGCCGAAATCCTCAAAGATCGTCCATCGTGGTTTCGGGATTGCCGTTGCCTTGATGTACTGAGTATAATTCCTGCGGGAAATGGTGGAACAATTGAGCTCTTATACATGCAGACTTATGCACCGACAACACTAGCTGCAGCTCGTGACTTTTGGACGCTAAGATATACTACAACATTGGAAGATGGTAGTCTTGTGGTATGCGAGAGGTCATTGACTTCTTCTACCGGCGGCCCAACAGGGCCCCCATCTCCAAGTTTTGTGAGAGCTGAGATGCTTCCTAGTGGCTTTCTTATCCGACCGTGTGAGGGTGGCGGCTCCATTATTCACATCGTTGATCATGTCGATTTAGATGCCTGGAGCGTTCCTGAAGTTCTCAGGTCACTTTATGAATCATCCAAAATCATTGCTCAAAAAATGACTGTTGCAGCCCTGCGTCACATAAGGCAGATAGCTCAAGAGGCCACTGGAGAAATTCAGTATGCTGGGGGTCGCCAGCCTGCTGTATTGAGAACTTTTAGTCAAAGGCTCTGCAGAGGTTTCAATGATGCTGTTAATGGATTTGCGGATGATGGTTGGTCCCTTTTGGGTAGTGATGGTGCGGAGGATGTGACCATTGCCATAAACTCGTCTCCAAACAAGTTTCTTGGTTCTCAGTATAATGCATCCATTTTCCCATCTTTTGGAGGAGGGGTGCTGTGTGCCAAGGCATCAATGTTGCTGCAGAGTGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCACCGATCAGAGTGGGCCGACTATGGGGTTGATGCATACTCTGCTGCATGTCTTAAAGCTAGCCCGTACGCAGTTCCTTGTGCAAGACCAGGTGGCTTCCCGAGCAGCCAGGTTATTTTACCTCTTGCACCCACTGTGGAGAATGAGGAGTTCTTAGAGGTTGTTCGGCTAGAGGGTCATGCTTACTCTCCTGAAGATGTTGCTTTGGCACGAGATATGTTCTTATTACAGCTGTGCAGCGGGGTTGATGAAAATGCAGTTGGTGCCTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCATTTGCTGATGATGCTCCTTTGTTGCCATCTGGTTTTCATGTCATACCGTTGGATGCCAAAACAGATGGACCAACTGCAAATCGCACATTGGATTTGGCCTCTACGCTTGAAGTAGGAGCCAGCAGTGCTCGCCGAGTTAACGAGGGTGATGCAAATAGTTACAACCTTAGGTCAGTTCTGACCATAGCCTTCCAATTTACATTTGAGAATCACCTGCGCGACAGTGTAGCCGCTATGGCTCGCCAGTATGTGCGTGGTGTTGTAAGCTCTGTTCAAAGGGTAGCTATGGCTATTGCCCCTTCCCGTCTCAGCTCCCAAATGGGACCAAAATCCCTTCCTGGTTCTCCTGAGGCTCATACTTTGGCACGCTGGATTTTCCGAAGCTACAGGATCCACACTGGGGCAGAGCTCTTTCGACTTGATTCCCCATCTGGTGATGCTGTTTTGAAGCAGCTTTGGAACCATCCTGATGCAATCATGTGTTGCTCTGTGAAAACAAATGCATCCCCAGTGTTCACTTTTGCAAACCAGGCCGGACTTGACATGCTTGAAACAACTCTTGTGGCCCTCCAAGACATCATGCTAGACAAGATTCTGGATGAAGCTGGACGGAAAGTTCTCTGCTCGGAGTTCTCCAAAATCATGCACCAGGGGTTTGCATATCTGCCAGCGGGAATATGTGCTTCTAGCATGGGCAGGCCGGTATCTTATGAGCAGGCTATTGCTTGGAAAGTTGTTAACGATGATGATTCCAACCATTGCCTGGCGCTCATGTTCACAAACTGGTCTTTCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009799 GO:0009855 GO:0009880 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080060 GO:0080090 GO:0090421 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

834

Amino Acids

91.11

Weight (kDa)

5.99

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	5 - 63	1.4e-15	Homeodomain
START	PF01852	154 - 361	9.5e-52	START domain
MEKHLA	PF08670	688 - 832	9.3e-46	MEKHLA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30490 AT2G34710
fragaria_vesca	FvH4_3g10070 FvH4_3g10070
malus_domestica	MD05G1273700.v1.1 MD10G1253500.v1.1
prunus_persica	Prupe.4G090100_v2.0.a1
pyrus_communis	pycom05g25510 pycom10g20910
rosa_chinensis	RchiOBHm_Chr5g0015931
rosa_laevigata	RLG00000032232
rosa_multiflora	Rmu_sc0001878.1_g000010
rosa_roxburghii	Rroxscaffold_1G00060660
rosa_rugosa	Rorug05G0030500
rosa_samantha	Rh5BG122800
rosa_wichuraiana	Rw5G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1926
Acc36I	ACCTGC	1 cut(s)	1926
AccB1I	GGYRCC	1 cut(s)	1664
AccB7I	CCANNNNNTGG	2 cut(s)	1319, 2467
AccI	GTMKAC	2 cut(s)	60, 513
AccII	CGCG	1 cut(s)	1923
AccIII	TCCGGA	1 cut(s)	547
AclWI	GGATC	2 cut(s)	2089, 2102
AcsI	RAATTY	1 cut(s)	1110
AcuI	CTGAAG	2 cut(s)	1026, 1614
AfaI	GTAC	3 cut(s)	26, 696, 1469
AfiI	CCNNNNNNNGG	7 cut(s)	54, 493, 944, 1319, 1425, 2104, 2467
AgsI	TTSAA	6 cut(s)	9, 1180, 1814, 1979, 2152, 2255
AjnI	CCWGG	8 cut(s)	541, 992, 1489, 1509, 2041, 2232, 2352, 2466
AjuI	GAANNNNNNNTTGG	4 cut(s)	67, 99, 1644, 1676
AleI	CACNNNNGTG	1 cut(s)	215
AloI	GAACNNNNNNTCC	2 cut(s)	2304, 2336
Alw21I	GWGCWC	5 cut(s)	738, 1404, 1675, 1834, 2115
Alw26I	GTCTC	4 cut(s)	289, 464, 1272, 2015
AlwI	GGATC	2 cut(s)	2089, 2102
AlwNI	CAGNNNCTG	2 cut(s)	103, 325
Ama87I	CYCGRG	1 cut(s)	1501
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	9 cut(s)	45, 868, 878, 1098, 1416, 1800, 2235, 2268, 2402
ApaI	GGGCCC	1 cut(s)	882
ApoI	RAATTY	1 cut(s)	1110
Asp700I	GAANNNNTTC	1 cut(s)	308
AspLEI	GCGC	2 cut(s)	1923, 2473
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	1862, 1907, 2150
AsuNHI	GCTAGC	1 cut(s)	1460
AvaI	CYCGRG	1 cut(s)	1501
AvaII	GGWCC	5 cut(s)	520, 545, 1215, 1772, 2027
AxyI	CCTNAGG	2 cut(s)	1871, 2052
BaeGI	GKGCMC	1 cut(s)	882
BamHI	GGATCC	1 cut(s)	2094
BanI	GGYRCC	1 cut(s)	1664
BanII	GRGCYC	4 cut(s)	630, 738, 882, 2115
BauI	CACGAG	3 cut(s)	600, 780, 1611
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	5 cut(s)	738, 1404, 1675, 1834, 2115
BceAI	ACGGC	1 cut(s)	666
BcgI	CGANNNNNNTGC	4 cut(s)	971, 1005, 1835, 1869
BciT130I	CCWGG	8 cut(s)	543, 994, 1491, 1511, 2043, 2234, 2354, 2468
BclI	TGATCA	1 cut(s)	973
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	4 cut(s)	289, 464, 1272, 2015
BfaI	CTAG	9 cut(s)	81, 455, 623, 770, 918, 1461, 1571, 2288, 2391
BfmI	CTRYAG	5 cut(s)	774, 1168, 1358, 1692, 2089
BfoI	RGCGCY	1 cut(s)	2474
BfuAI	ACCTGC	1 cut(s)	1926
BglI	GCCNNNNNGGC	1 cut(s)	1940
BlpI	GCTNAGC	1 cut(s)	1674
Bme1390I	CCNGG	9 cut(s)	179, 543, 994, 1491, 1511, 2043, 2234, 2354, 2468
Bme18I	GGWCC	5 cut(s)	520, 545, 1215, 1772, 2027
BmeT110I	CYCGRG	1 cut(s)	1501
BmrFI	CCNGG	9 cut(s)	179, 543, 994, 1491, 1511, 2043, 2234, 2354, 2468
BmrI	ACTGGG	3 cut(s)	526, 2112, 2207
BmtI	GCTAGC	1 cut(s)	1464
BmuI	ACTGGG	3 cut(s)	526, 2112, 2207
BpiI	GAAGAC	1 cut(s)	443
BplI	GAGNNNNNCTC	2 cut(s)	1354, 1386
BpmI	CTGGAG	3 cut(s)	568, 1015, 1125
Bpu1102I	GCTNAGC	1 cut(s)	1674
BpuEI	CTTGAG	1 cut(s)	1077
BpuMI	CCSGG	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	5 cut(s)	48, 474, 492, 1341, 2353
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	1314, 1344
Bsc4I	CCNNNNNNNGG	7 cut(s)	54, 493, 944, 1319, 1425, 2104, 2467
Bse118I	RCCGGY	2 cut(s)	863, 2404
Bse1I	ACTGG	8 cut(s)	505, 521, 585, 1108, 1948, 2107, 2213, 2492
Bse21I	CCTNAGG	2 cut(s)	1871, 2052
Bse3DI	GCAATG	3 cut(s)	1041, 1251, 2461
BseAI	TCCGGA	1 cut(s)	547
BseBI	CCWGG	8 cut(s)	543, 994, 1491, 1511, 2043, 2234, 2354, 2468
BseDI	CCNNGG	5 cut(s)	48, 474, 492, 1341, 2353
BseLI	CCNNNNNNNGG	7 cut(s)	54, 493, 944, 1319, 1425, 2104, 2467
BseMI	GCAATG	3 cut(s)	1041, 1251, 2461
BseMII	CTCAG	8 cut(s)	689, 897, 1027, 1304, 1385, 1688, 2026, 2043
BseNI	ACTGG	8 cut(s)	505, 521, 585, 1108, 1948, 2107, 2213, 2492
BseRI	GAGGAG	3 cut(s)	482, 1338, 1562
BseSI	GKGCMC	1 cut(s)	882
BseYI	CCCAGC	3 cut(s)	414, 442, 1121
BsgI	GTGCAG	1 cut(s)	1657
Bsh1236I	CGCG	1 cut(s)	1923
Bsh1285I	CGRYCG	1 cut(s)	938
BshFI	GGCC	9 cut(s)	47, 870, 880, 1100, 1418, 1802, 2237, 2270, 2404
BshNI	GGYRCC	1 cut(s)	1664
BsiEI	CGRYCG	1 cut(s)	938
BsiHKAI	GWGCWC	5 cut(s)	738, 1404, 1675, 1834, 2115
BsiHKCI	CYCGRG	1 cut(s)	1501
BsiSI	CCGG	5 cut(s)	178, 548, 864, 2238, 2405
BsiWI	CGTACG	1 cut(s)	1467
BslFI	GGGAC	2 cut(s)	1201, 2040
BslI	CCNNNNNNNGG	7 cut(s)	54, 493, 944, 1319, 1425, 2104, 2467
BsmAI	GTCTC	4 cut(s)	289, 464, 1272, 2015
BsmBI	CGTCTC	2 cut(s)	1272, 2015
BsmFI	GGGAC	2 cut(s)	1201, 2040
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	9 cut(s)	47, 870, 880, 1100, 1418, 1802, 2237, 2270, 2404
Bso31I	GGTCTC	1 cut(s)	464
BsoBI	CYCGRG	1 cut(s)	1501
Bsp120I	GGGCCC	1 cut(s)	878
Bsp1286I	GDGCHC	7 cut(s)	630, 738, 882, 1404, 1675, 1834, 2115
Bsp13I	TCCGGA	1 cut(s)	547
Bsp143I	GATC	5 cut(s)	147, 655, 973, 1406, 2094
Bsp1720I	GCTNAGC	1 cut(s)	1674
BspANI	GGCC	9 cut(s)	47, 870, 880, 1100, 1418, 1802, 2237, 2270, 2404
BspCNI	CTCAG	8 cut(s)	690, 898, 1026, 1303, 1386, 1687, 2025, 2044
BspEI	TCCGGA	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	1923
BspHI	TCATGA	2 cut(s)	312, 375
BspMAI	CTGCAG	3 cut(s)	778, 1172, 1362
BspMI	ACCTGC	1 cut(s)	1926
BspOI	GCTAGC	1 cut(s)	1464
BspPI	GGATC	2 cut(s)	2089, 2102
BspT107I	GGYRCC	1 cut(s)	1664
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	3 cut(s)	1041, 1251, 2461
BsrFI	RCCGGY	2 cut(s)	863, 2404
BsrI	ACTGG	8 cut(s)	505, 521, 585, 1108, 1948, 2107, 2213, 2492
BssAI	RCCGGY	2 cut(s)	863, 2404
BssECI	CCNNGG	5 cut(s)	48, 474, 492, 1341, 2353
BssMI	GATC	5 cut(s)	147, 655, 973, 1406, 2094
BssSI	CACGAG	3 cut(s)	600, 780, 1611
BssT1I	CCWWGG	4 cut(s)	48, 474, 492, 1341
Bst2BI	CACGAG	3 cut(s)	600, 780, 1611
Bst2UI	CCWGG	8 cut(s)	543, 994, 1491, 1511, 2043, 2234, 2354, 2468
Bst4CI	ACNGT	6 cut(s)	217, 939, 1060, 1537, 1752, 1928
BstAPI	GCANNNNNTGC	3 cut(s)	325, 1442, 1664
BstENI	CCTNNNNNAGG	2 cut(s)	52, 491
BstFNI	CGCG	1 cut(s)	1923
BstH2I	RGCGCY	1 cut(s)	2474
BstHHI	GCGC	2 cut(s)	1923, 2473
BstKTI	GATC	5 cut(s)	150, 658, 976, 1409, 2097
BstMAI	GTCTC	4 cut(s)	289, 464, 1272, 2015
BstMBI	GATC	5 cut(s)	147, 655, 973, 1406, 2094
BstMCI	CGRYCG	1 cut(s)	938
BstNI	CCWGG	8 cut(s)	543, 994, 1491, 1511, 2043, 2234, 2354, 2468
BstNSI	RCATGY	3 cut(s)	748, 1452, 2251
BstSCI	CCNGG	9 cut(s)	177, 541, 992, 1489, 1509, 2041, 2232, 2352, 2466
BstSFI	CTRYAG	5 cut(s)	774, 1168, 1358, 1692, 2089
BstSLI	GKGCMC	1 cut(s)	882
BstUI	CGCG	1 cut(s)	1923
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	2094
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	2094
Bsu36I	CCTNAGG	2 cut(s)	1871, 2052
BsuRI	GGCC	9 cut(s)	47, 870, 880, 1100, 1418, 1802, 2237, 2270, 2404
BtsI	GCAGTG	1 cut(s)	1834
BtsIMutI	CAGTG	8 cut(s)	222, 592, 1101, 1533, 1834, 1933, 2100, 2220
BveI	ACCTGC	1 cut(s)	1926
CaiI	CAGNNNCTG	2 cut(s)	103, 325
CciI	TCATGA	2 cut(s)	312, 375
CfoI	GCGC	2 cut(s)	1923, 2473
Cfr10I	RCCGGY	2 cut(s)	863, 2404
CseI	GACGC	2 cut(s)	802, 1061
CsiI	ACCWGGT	1 cut(s)	1489
Csp6I	GTAC	3 cut(s)	25, 695, 1468
CspCI	CAANNNNNGTGG	4 cut(s)	568, 603, 2247, 2282
CviQI	GTAC	3 cut(s)	25, 695, 1468
DpnI	GATC	5 cut(s)	149, 657, 975, 1408, 2096
DpnII	GATC	5 cut(s)	147, 655, 973, 1406, 2094
Ecl136II	GAGCTC	2 cut(s)	736, 2113
Eco130I	CCWWGG	4 cut(s)	48, 474, 492, 1341
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	4 cut(s)	630, 738, 882, 2115
Eco31I	GGTCTC	1 cut(s)	464
Eco47I	GGWCC	5 cut(s)	520, 545, 1215, 1772, 2027
Eco53kI	GAGCTC	2 cut(s)	736, 2113
Eco57I	CTGAAG	2 cut(s)	1026, 1614
Eco81I	CCTNAGG	2 cut(s)	1871, 2052
Eco88I	CYCGRG	1 cut(s)	1501
EcoICRI	GAGCTC	2 cut(s)	736, 2113
EcoNI	CCTNNNNNAGG	2 cut(s)	52, 491
EcoO109I	RGGNCCY	2 cut(s)	878, 879
EcoRII	CCWGG	8 cut(s)	541, 992, 1489, 1509, 2041, 2232, 2352, 2466
EcoT14I	CCWWGG	4 cut(s)	48, 474, 492, 1341
EcoT22I	ATGCAT	3 cut(s)	1303, 1438, 2209
EcoT38I	GRGCYC	4 cut(s)	630, 738, 882, 2115
ErhI	CCWWGG	4 cut(s)	48, 474, 492, 1341
Esp3I	CGTCTC	2 cut(s)	1272, 2015
FaqI	GGGAC	2 cut(s)	1201, 2040
FauI	CCCGC	4 cut(s)	584, 706, 1634, 2368
FbaI	TGATCA	1 cut(s)	973
FblI	GTMKAC	2 cut(s)	60, 513
FriOI	GRGCYC	4 cut(s)	630, 738, 882, 2115
FspBI	CTAG	9 cut(s)	81, 455, 623, 770, 918, 1461, 1571, 2288, 2391
GlaI	GCGC	2 cut(s)	1922, 2472
GsaI	CCCAGC	3 cut(s)	418, 446, 1125
GsuI	CTGGAG	3 cut(s)	568, 1015, 1125
HaeII	RGCGCY	1 cut(s)	2474
HaeIII	GGCC	9 cut(s)	47, 870, 880, 1100, 1418, 1802, 2237, 2270, 2404
HapII	CCGG	5 cut(s)	178, 548, 864, 2238, 2405
HgaI	GACGC	2 cut(s)	802, 1061
HhaI	GCGC	2 cut(s)	1923, 2473
Hin6I	GCGC	2 cut(s)	1921, 2471
HinP1I	GCGC	2 cut(s)	1921, 2471
HincII	GTYRAC	3 cut(s)	514, 1843, 2443
HindII	GTYRAC	3 cut(s)	514, 1843, 2443
HpaI	GTTAAC	2 cut(s)	1843, 2443
HpaII	CCGG	5 cut(s)	178, 548, 864, 2238, 2405
HphI	GGTGA	3 cut(s)	1862, 1907, 2150
Hpy166II	GTNNAC	7 cut(s)	27, 61, 514, 1843, 2220, 2443, 2481
Hpy188I	TCNGA	7 cut(s)	67, 935, 1395, 1411, 1884, 2084, 2332
Hpy8I	GTNNAC	7 cut(s)	27, 61, 514, 1843, 2220, 2443, 2481
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	5 cut(s)	87, 187, 1903, 2013, 2048
HpyCH4III	ACNGT	6 cut(s)	217, 939, 1060, 1537, 1752, 1928
HspAI	GCGC	2 cut(s)	1921, 2471
Kpn2I	TCCGGA	1 cut(s)	547
Ksp22I	TGATCA	1 cut(s)	973
KspAI	GTTAAC	2 cut(s)	1843, 2443
Kzo9I	GATC	5 cut(s)	147, 655, 973, 1406, 2094
LmnI	GCTCC	6 cut(s)	959, 996, 1399, 1723, 1820, 2021
MabI	ACCWGGT	1 cut(s)	1489
MaeI	CTAG	9 cut(s)	81, 455, 623, 770, 918, 1461, 1571, 2288, 2391
MaeIII	GTNAC	5 cut(s)	782, 1017, 1073, 1246, 1862
MalI	GATC	5 cut(s)	149, 657, 975, 1408, 2096
MboI	GATC	5 cut(s)	147, 655, 973, 1406, 2094
MboII	GAAGA	7 cut(s)	183, 192, 269, 443, 830, 849, 1607
MfeI	CAATTG	2 cut(s)	459, 729
MflI	RGATCY	1 cut(s)	2094
MhlI	GDGCHC	7 cut(s)	630, 738, 882, 1404, 1675, 1834, 2115
MluCI	AATT	5 cut(s)	459, 705, 729, 1110, 1898
MlyI	GAGTC	2 cut(s)	201, 374
MmeI	TCCRAC	3 cut(s)	958, 1734, 2481
Mph1103I	ATGCAT	3 cut(s)	1303, 1438, 2209
MroI	TCCGGA	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	5 cut(s)	251, 1191, 1455, 1842, 2442
MslI	CAYNNNNRTG	2 cut(s)	215, 2172
MspA1I	CMGCKG	5 cut(s)	103, 446, 1633, 1641, 2375
MspI	CCGG	5 cut(s)	178, 548, 864, 2238, 2405
MspR9I	CCNGG	9 cut(s)	179, 543, 994, 1491, 1511, 2043, 2234, 2354, 2468
MunI	CAATTG	2 cut(s)	459, 729
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	8 cut(s)	543, 994, 1491, 1511, 2043, 2234, 2354, 2468
MvnI	CGCG	1 cut(s)	1923
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	5 cut(s)	147, 655, 973, 1406, 2094
NheI	GCTAGC	1 cut(s)	1460
NmeAIII	GCCGAG	1 cut(s)	1862
NmuCI	GTSAC	4 cut(s)	782, 1017, 1073, 1246
NsiI	ATGCAT	3 cut(s)	1303, 1438, 2209
NspI	RCATGY	3 cut(s)	748, 1452, 2251
OliI	CACNNNNGTG	1 cut(s)	215
PagI	TCATGA	2 cut(s)	312, 375
PaqCI	CACCTGC	1 cut(s)	1926
PceI	AGGCCT	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	679
PctI	GAATGC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	308
Pfl23II	CGTACG	1 cut(s)	1467
PflFI	GACNNNGTC	1 cut(s)	518
PflMI	CCANNNNNTGG	2 cut(s)	1319, 2467
PleI	GAGTC	2 cut(s)	201, 373
PpsI	GAGTC	2 cut(s)	201, 373
Psp124BI	GAGCTC	2 cut(s)	738, 2115
Psp6I	CCWGG	8 cut(s)	541, 992, 1489, 1509, 2041, 2232, 2352, 2466
PspFI	CCCAGC	3 cut(s)	414, 442, 1121
PspGI	CCWGG	8 cut(s)	541, 992, 1489, 1509, 2041, 2232, 2352, 2466
PspLI	CGTACG	1 cut(s)	1467
PspOMI	GGGCCC	1 cut(s)	878
PsrI	GAACNNNNNNTAC	2 cut(s)	1959, 1991
PstI	CTGCAG	3 cut(s)	778, 1172, 1362
PstNI	CAGNNNCTG	2 cut(s)	103, 325
PsuI	RGATCY	1 cut(s)	2094
PsyI	GACNNNGTC	1 cut(s)	518
PvuII	CAGCTG	3 cut(s)	103, 446, 1633
RsaI	GTAC	3 cut(s)	26, 696, 1469
RsaNI	GTAC	3 cut(s)	25, 695, 1468
RseI	CAYNNNNRTG	2 cut(s)	215, 2172
SacI	GAGCTC	2 cut(s)	738, 2115
SalI	GTCGAC	1 cut(s)	512
SaqAI	TTAA	5 cut(s)	251, 1191, 1455, 1842, 2442
Sau3AI	GATC	5 cut(s)	147, 655, 973, 1406, 2094
SchI	GAGTC	2 cut(s)	201, 374
ScrFI	CCNGG	9 cut(s)	179, 543, 994, 1491, 1511, 2043, 2234, 2354, 2468
SduI	GDGCHC	7 cut(s)	630, 738, 882, 1404, 1675, 1834, 2115
SexAI	ACCWGGT	1 cut(s)	1489
SfcI	CTRYAG	5 cut(s)	774, 1168, 1358, 1692, 2089
SinI	GGWCC	5 cut(s)	520, 545, 1215, 1772, 2027
SmiMI	CAYNNNNRTG	2 cut(s)	215, 2172
SmlI	CTYRAG	1 cut(s)	1092
SmoI	CTYRAG	1 cut(s)	1092
Sse9I	AATT	5 cut(s)	459, 705, 729, 1110, 1898
SseBI	AGGCCT	1 cut(s)	47
SspMI	CTAG	9 cut(s)	81, 455, 623, 770, 918, 1461, 1571, 2288, 2391
SstI	GAGCTC	2 cut(s)	738, 2115
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	9 cut(s)	177, 541, 992, 1489, 1509, 2041, 2232, 2352, 2466
StyI	CCWWGG	4 cut(s)	48, 474, 492, 1341
TaaI	ACNGT	6 cut(s)	217, 939, 1060, 1537, 1752, 1928
TaqI	TCGA	5 cut(s)	169, 205, 513, 981, 2119
TasI	AATT	5 cut(s)	459, 705, 729, 1110, 1898
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	3 cut(s)	870, 954, 1937
Tru1I	TTAA	5 cut(s)	251, 1191, 1455, 1842, 2442
Tru9I	TTAA	5 cut(s)	251, 1191, 1455, 1842, 2442
TscAI	CASTG	8 cut(s)	222, 592, 1108, 1540, 1834, 1933, 2107, 2220
TseFI	GTSAC	4 cut(s)	782, 1017, 1073, 1246
Tsp45I	GTSAC	4 cut(s)	782, 1017, 1073, 1246
TspGWI	ACGGA	1 cut(s)	2329
TspRI	CASTG	8 cut(s)	222, 592, 1108, 1540, 1834, 1933, 2107, 2220
Tth111I	GACNNNGTC	1 cut(s)	518
Van91I	CCANNNNNTGG	2 cut(s)	1319, 2467
VpaK11BI	GGWCC	5 cut(s)	520, 545, 1215, 1772, 2027
XagI	CCTNNNNNAGG	2 cut(s)	52, 491
XapI	RAATTY	1 cut(s)	1110
XceI	RCATGY	3 cut(s)	748, 1452, 2251
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1955, 2464
XmiI	GTMKAC	2 cut(s)	60, 513
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	9 cut(s)	81, 455, 623, 770, 918, 1461, 1571, 2288, 2391
Zsp2I	ATGCAT	3 cut(s)	1303, 1438, 2209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.