Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009507

Physical Location & Seq

Genomic Coordinates Forward (+)

1944473 .. 1950523

Gene Structure 6051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0030500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGGAGCTTTCCCGAGAAAACCCTAGACCCCTCGCTTTTCCGGCCACCAAGCCCATGCCCGACCTCGCTCCTAAGCCGCCTCCGACGCCGACTCCGACTCCGATAATCGACCGCTACAAAGTCCTGCTCAAGCAGCGGGACGACGACCTCAGGGTCTCGCCCGAGGACGACGTGTCGCCGCCGAGCACCGAGGAGATTGTGCAGCTCTACGAGATGCTCTTGTCCGAGCTCGTGTTTAATTCGAAGCCGATCATTACCGATCTCACTATCATCGCCGGCGAGCAGCGAGACCACGGCAAGGGCATCGCCGACGCCATCTGCGCTCGGATTCTCGAGGTCCCAGTTGAGCACAAGCTGCCTTCGTTATATCTTTTAGACAGTATTGTAAAGAACATTGGCCGAGACTATGTCAGATACTTCTCTTCCCGTCTACCTGAGGTCTTCTGTGAGGCATACAGGCAAGTTCACCCCAACCAGCATTCTGCCATGCGCCACCTCTTTGGCACTTGGTCGGCAGTGTTTCCACCTTCAGTCCTTCGCAGGATTGAAACGCAGCTGCAGTTTTCTCCACAGATAAACCAGCAATCATCAGGTTTACCTCCTTTGAGAGCATCTGAATCTCCTCGGCCGGCTCATGGCATCCATGTCAATCCAAAATATTTACGTCAGTTGGAGACCTCAGATGTGGATAATCAGGTTGGACCTCAAAGATTAAGCTCAACAGGAAATATGAGTCATACAGATTTTCCTGTTGGGTCCAATCGTATACAGCCATCTTCAACTGTCAGACTTGCAAGATCTTCTTCACCTTCAAATATTGGCCTCGATGAATATGAAGTAGAAAATTCTCCTAAAAGGTTTGGTGACCGGGCTTCTCCATCTAATTCTGTGTATGATTATAGAGCAATCAGAGATGAGGAGCCAAATGAAAGGCGGAGAAAACATTATCTTGATGGTAGTCAGAACCGGTTAAATAATGGACTTGAACATCAAAGACCAAGAGCTTTGATTGATGCATATGGAAAAGACAGTGGGGATAGAAGTTTAAATGATAAGCCTTTGCATGTTGGGCGGCTTGGTGTAAATGGTCTAGATCACAAAGCAACTTCAATGTCATGGCAGAATACTGAGGAGGATGAGTTTGATTGGAAATCTGTCGGCCCACCTATAACTGAGCACACTAGAAGTAATGATTTCTTGCCTTCAAATATACCACCTTCTAGAAGCTACAGGGCCAGGCCTGGCCTCGGAACACTGAATGCAAGCTCCTTAGATTCTGATATTGGGAGTAGTTGGTCTACTCAGGCATACCTACCTTCTGAACAGTCCTCTGTAGTTGCTGAAGATCCAGTCCCCCCGCTTTCTTTTACTCGTGGATTCGCAGGTAGATTCCAGTCCGAGATAAATCATAATCAGGGTTCTCGCCACCCTCAAGAACCCTGGAATATGCCTTTCCATCCCTCTCAGCATTCACAGACTCTTCTTAATACCAAAGAAATAGGTAGAAATTTCCATATGCCTGGTATGTCTCTAGGTGGTGAGAAAGTGTCTACTGATGCCGATGTGCGACTTCACGGGCCAACATCAAGAATGGGTTCTGGTGCTGACTTTGTTAATGCTGACTCTCGGTTAGTTATACCAATGTCAGTGGGTTTAAGGCCTCCAGTAAACGTGCACAATTCTCACCCGCCGCCTGTGCACCCTATTTTTCCATTGCAAAACCAGAGGAGTCAGTATGGTTTCATAAATTCTGTCGATACTGCTAAGAATCAAGGTCCATATAAGTCTATGTATATGCCTGAGCAGCAGTTGGACGGTTATGAAAACAAGGATTTGGGGTTGGCAAAGCTAAGTCAGTTGACTAGTCAGAATGCCAGACTCATACCTGTTAATCAGCGAAACCAGGCTCAGGTCAGTCCTTTCCAACCACAATTTCATCCACATCAGGAGCCACCTTATTCAGTGGTACCGCGTGGATACAATTTGCAAGGGCAGGGTGGTACTGGTATCGCAAATCCTGTACCTCGTCTACAGTTGGGCTTACCAACTCACTATACCCCAAACGCTAATTTGCGTGGGGACTCCTTGCCACCTCTACCACCTGGCCCCCCTCCTCCCATGCAAGGTGTATTTCCTGGTCAAAAGGCTGGTCCGGTAGTCTCTAGCAACCAGCAAGGGAGTTCATATACTGGTTTGATTAGTTCTCTCATGGCTCAAGGTGTGATCTCATTGACAAATCCAAGTGGACTGCAGGATTCTGTAGGAGTTGAGTTCAATGCAGACCTTCTTAAGGTACGTCATGAATCTGTAATAACTGCTCTGTATTATGATCTCCCAAGACAATGCACAACCTGTGGTCTCCGGTTCAAGTGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACAAAGAACAGGATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAGTGGTTTGTAACTACAAGCATGTGGCTCAGTGGTGCAGAGGCTTTGGGAACTGATGCAGTTCCTGGCTTTTTACCTGCTGACACCATTGCGGAAAAGAAGAGTGATGAAGAATTGGCTGTTCCTGCTGATGAGGATCAGAATTCATGCGCGTTATGTGGAGAGCCTTTTGATGATTTTTATAGTGATGAGACAGAGGAGTGGATGTATAAAGGTGCTGTGTACTTGAATGCACCTCATGGGTCAACACCAGACATGGATAGGTCACAATTAGGTCCTATAGTGCATGCCAAATGCAGGCCGGAGTCCACTGATGTATCCCCTGGAGGTTTTGGACAAGATGAAGGGGGAACTATTGAAGAGGGTAGTCAAAGAAAACGTTTGCGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009799 GO:0009855 GO:0009880 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080060 GO:0080090 GO:0090421 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

948

Amino Acids

105.13

Weight (kDa)

6.29

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	73 - 179	3.6e-12	CID domain
zf_PCFS4	PF23228	854 - 920	2.4e-29	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29130 AT3G29130 AT3G29130 AT3G29130 AT3G29130 AT3G29130
fragaria_vesca	FvH4_3g10060
malus_domestica	MD05G1273800.v1.1 MD10G1253600.v1.1
prunus_persica	Prupe.4G090000_v2.0.a1
pyrus_communis	pycom05g25520
rosa_chinensis	RchiOBHm_Chr5g0015911
rosa_laevigata	RLG00000032231
rosa_multiflora	Rmu_sc0001878.1_g000012
rosa_roxburghii	Rroxscaffold_1G00060680
rosa_rugosa	Rorug05G0030200 Rorug05G0030300 Rorug05G0030400 Rorug05G0030500
rosa_samantha	Rh5AG123800 Rh5CG134100
rosa_wichuraiana	Rw5G010690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
Acc36I	ACCTGC	2 cut(s)	1373, 2539
Acc65I	GGTACC	1 cut(s)	1966
AccB1I	GGYRCC	1 cut(s)	1966
AccI	GTMKAC	5 cut(s)	430, 766, 1298, 1550, 2029
AccII	CGCG	2 cut(s)	1972, 2606
AclI	AACGTT	1 cut(s)	2833
AclWI	GGATC	2 cut(s)	1340, 2598
AcoI	YGGCCR	3 cut(s)	42, 397, 626
AcsI	RAATTY	4 cut(s)	844, 1507, 1747, 2596
AcuI	CTGAAG	2 cut(s)	513, 1362
AcyI	GRCGYC	2 cut(s)	86, 312
AfaI	GTAC	5 cut(s)	1968, 2002, 2022, 2295, 2678
AfiI	CCNNNNNNNGG	7 cut(s)	298, 635, 1247, 1909, 2123, 2290, 2751
AflII	CTTAAG	1 cut(s)	2288
AflIII	ACRYGT	1 cut(s)	171
AgeI	ACCGGT	1 cut(s)	966
AhdI	GACNNNNNGTC	1 cut(s)	172
AhlI	ACTAGT	1 cut(s)	1862
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	9 cut(s)	1235, 1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
AjuI	GAANNNNNNNTTGG	2 cut(s)	1917, 1949
Alw21I	GWGCWC	7 cut(s)	188, 231, 351, 1179, 1677, 1701, 2385
Alw26I	GTCTC	8 cut(s)	160, 282, 396, 668, 1533, 2164, 2363, 2639
Alw44I	GTGCAC	2 cut(s)	1673, 1697
AlwI	GGATC	2 cut(s)	1340, 2598
AlwNI	CAGNNNCTG	1 cut(s)	2519
Ama87I	CYCGRG	3 cut(s)	12, 161, 332
ApaLI	GTGCAC	2 cut(s)	1673, 1697
ApeKI	GCWGC	7 cut(s)	133, 202, 283, 355, 553, 556, 1804
ApoI	RAATTY	4 cut(s)	844, 1507, 1747, 2596
ArsI	GACNNNNNNTTYG	2 cut(s)	2134, 2166
AsiGI	ACCGGT	1 cut(s)	966
Asp700I	GAANNNNTTC	1 cut(s)	1594
Asp718I	GGTACC	1 cut(s)	1966
AspLEI	GCGC	3 cut(s)	323, 492, 2606
AsuC2I	CCSGG	1 cut(s)	869
AsuHPI	GGTGA	5 cut(s)	458, 798, 875, 1550, 1676
AsuII	TTCGAA	1 cut(s)	242
AvaI	CYCGRG	3 cut(s)	12, 161, 332
AvaII	GGWCC	6 cut(s)	337, 701, 756, 1775, 2150, 2729
AxyI	CCTNAGG	2 cut(s)	149, 435
BaeGI	GKGCMC	2 cut(s)	1677, 1701
BaeI	ACNNNNGTAYC	2 cut(s)	2754, 2787
BanI	GGYRCC	1 cut(s)	1966
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	2 cut(s)	230, 1371
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	7 cut(s)	188, 231, 351, 1179, 1677, 1701, 2385
BbvI	GCAGC	7 cut(s)	145, 214, 295, 342, 543, 565, 1816
BccI	CCATC	5 cut(s)	323, 781, 886, 947, 1464
BceAI	ACGGC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	9 cut(s)	1237, 1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
BciVI	GTATCC	2 cut(s)	1970, 2782
BcnI	CCSGG	1 cut(s)	869
BcoDI	GTCTC	8 cut(s)	160, 282, 396, 668, 1533, 2164, 2363, 2639
BcuI	ACTAGT	1 cut(s)	1862
BfaI	CTAG	7 cut(s)	24, 1091, 1182, 1221, 1532, 1863, 2163
BfmI	CTRYAG	7 cut(s)	557, 1228, 1332, 2030, 2249, 2259, 2733
BfrI	CTTAAG	1 cut(s)	2288
BfuAI	ACCTGC	2 cut(s)	1373, 2539
BfuI	GTATCC	2 cut(s)	1970, 2782
BglII	AGATCT	1 cut(s)	797
Bme18I	GGWCC	6 cut(s)	337, 701, 756, 1775, 2150, 2729
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmeT110I	CYCGRG	3 cut(s)	12, 161, 332
BmgBI	CACGTC	1 cut(s)	172
BmiI	GGNNCC	6 cut(s)	339, 757, 921, 1950, 1968, 2107
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	7 cut(s)	204, 312, 620, 648, 1003, 1546, 2500
BmuI	ACTGGG	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	2 cut(s)	1647, 2799
Bpu10I	CCTNAGC	3 cut(s)	72, 1800, 1908
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	3 cut(s)	113, 1416, 2199
BpuMI	CCSGG	1 cut(s)	869
BsaBI	GATNNNNATC	1 cut(s)	2589
BsaHI	GRCGYC	2 cut(s)	86, 312
BsaI	GGTCTC	4 cut(s)	160, 282, 668, 2363
BsaJI	CCNNGG	7 cut(s)	162, 189, 292, 623, 1246, 1439, 2776
BsaWI	WCCGGW	3 cut(s)	966, 2152, 2361
BsaXI	ACNNNNNCTCC	8 cut(s)	76, 82, 106, 112, 1124, 1154, 2645, 2675
Bsc4I	CCNNNNNNNGG	7 cut(s)	298, 635, 1247, 1909, 2123, 2290, 2751
Bse118I	RCCGGY	3 cut(s)	275, 628, 966
Bse1I	ACTGG	6 cut(s)	341, 1349, 1393, 1664, 2008, 2194
Bse21I	CCTNAGG	2 cut(s)	149, 435
Bse3DI	GCAATG	2 cut(s)	1712, 2541
Bse8I	GATNNNNATC	1 cut(s)	2589
BseBI	CCWGG	9 cut(s)	1237, 1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
BseDI	CCNNGG	7 cut(s)	162, 189, 292, 623, 1246, 1439, 2776
BseGI	GGATG	6 cut(s)	639, 1141, 1456, 1936, 2427, 2664
BseJI	GATNNNNATC	1 cut(s)	2589
BseLI	CCNNNNNNNGG	7 cut(s)	298, 635, 1247, 1909, 2123, 2290, 2751
BseMI	GCAATG	2 cut(s)	1712, 2541
BseNI	ACTGG	6 cut(s)	341, 1349, 1393, 1664, 2008, 2194
BseRI	GAGGAG	8 cut(s)	206, 612, 932, 1145, 1741, 2103, 2393, 2666
BseSI	GKGCMC	2 cut(s)	1677, 1701
BseX3I	CGGCCG	1 cut(s)	626
BseXI	GCAGC	7 cut(s)	145, 214, 295, 342, 543, 565, 1816
BsgI	GTGCAG	2 cut(s)	221, 2511
Bsh1236I	CGCG	2 cut(s)	1972, 2606
Bsh1285I	CGRYCG	2 cut(s)	112, 629
BshNI	GGYRCC	1 cut(s)	1966
BshTI	ACCGGT	1 cut(s)	966
BsiEI	CGRYCG	2 cut(s)	112, 629
BsiHKAI	GWGCWC	7 cut(s)	188, 231, 351, 1179, 1677, 1701, 2385
BsiHKCI	CYCGRG	3 cut(s)	12, 161, 332
BsiSI	CCGG	8 cut(s)	41, 276, 629, 868, 967, 2153, 2362, 2756
BslFI	GGGAC	4 cut(s)	152, 323, 1337, 2093
BslI	CCNNNNNNNGG	7 cut(s)	298, 635, 1247, 1909, 2123, 2290, 2751
BsmAI	GTCTC	8 cut(s)	160, 282, 396, 668, 1533, 2164, 2363, 2639
BsmFI	GGGAC	4 cut(s)	152, 323, 1337, 2093
BsmI	GAATGC	5 cut(s)	478, 1264, 1468, 1876, 2689
Bso31I	GGTCTC	4 cut(s)	160, 282, 668, 2363
BsoBI	CYCGRG	3 cut(s)	12, 161, 332
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	7 cut(s)	188, 231, 351, 1179, 1677, 1701, 2385
Bsp143I	GATC	8 cut(s)	249, 259, 797, 1093, 1345, 2223, 2329, 2590
BspFNI	CGCG	2 cut(s)	1972, 2606
BspHI	TCATGA	1 cut(s)	2299
BspLI	GGNNCC	6 cut(s)	339, 757, 921, 1950, 1968, 2107
BspMAI	CTGCAG	2 cut(s)	561, 2253
BspMI	ACCTGC	2 cut(s)	1373, 2539
BspPI	GGATC	2 cut(s)	1340, 2598
BspT104I	TTCGAA	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	1966
BspTI	CTTAAG	1 cut(s)	2288
BspTNI	GGTCTC	4 cut(s)	160, 282, 668, 2363
BsrDI	GCAATG	2 cut(s)	1712, 2541
BsrFI	RCCGGY	3 cut(s)	275, 628, 966
BsrI	ACTGG	6 cut(s)	341, 1349, 1393, 1664, 2008, 2194
BssAI	RCCGGY	3 cut(s)	275, 628, 966
BssECI	CCNNGG	7 cut(s)	162, 189, 292, 623, 1246, 1439, 2776
BssMI	GATC	8 cut(s)	249, 259, 797, 1093, 1345, 2223, 2329, 2590
BssNAI	GTATAC	1 cut(s)	767
BssNI	GRCGYC	2 cut(s)	86, 312
BssSI	CACGAG	2 cut(s)	230, 1371
Bst1107I	GTATAC	1 cut(s)	767
Bst2BI	CACGAG	2 cut(s)	230, 1371
Bst2UI	CCWGG	9 cut(s)	1237, 1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
Bst4CI	ACNGT	8 cut(s)	380, 784, 1031, 1326, 1817, 2034, 2387, 2435
Bst6I	CTCTTC	4 cut(s)	427, 1485, 2549, 2808
BstACI	GRCGYC	2 cut(s)	86, 312
BstAFI	CTTAAG	1 cut(s)	2288
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	6 cut(s)	277, 281, 630, 1264, 2742, 2753
BstDSI	CCRYGG	1 cut(s)	292
BstEII	GGTNACC	1 cut(s)	863
BstENI	CCTNNNNNAGG	1 cut(s)	2288
BstF5I	GGATG	6 cut(s)	639, 1141, 1456, 1936, 2427, 2664
BstFNI	CGCG	2 cut(s)	1972, 2606
BstHHI	GCGC	3 cut(s)	323, 492, 2606
BstKTI	GATC	8 cut(s)	252, 262, 800, 1096, 1348, 2226, 2332, 2593
BstMAI	GTCTC	8 cut(s)	160, 282, 396, 668, 1533, 2164, 2363, 2639
BstMBI	GATC	8 cut(s)	249, 259, 797, 1093, 1345, 2223, 2329, 2590
BstMCI	CGRYCG	2 cut(s)	112, 629
BstMWI	GCNNNNNNNGC	9 cut(s)	41, 85, 133, 320, 355, 1069, 1696, 1804, 2579
BstNI	CCWGG	9 cut(s)	1237, 1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
BstNSI	RCATGY	4 cut(s)	1067, 2408, 2479, 2744
BstPI	GGTNACC	1 cut(s)	863
BstSFI	CTRYAG	7 cut(s)	557, 1228, 1332, 2030, 2249, 2259, 2733
BstSLI	GKGCMC	2 cut(s)	1677, 1701
BstUI	CGCG	2 cut(s)	1972, 2606
BstV1I	GCAGC	7 cut(s)	145, 214, 295, 342, 543, 565, 1816
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	797, 1345
BstXI	CCANNNNNNTGG	2 cut(s)	500, 1520
BstYI	RGATCY	2 cut(s)	797, 1345
BstZ17I	GTATAC	1 cut(s)	767
BstZI	CGGCCG	1 cut(s)	626
Bsu36I	CCTNAGG	2 cut(s)	149, 435
BsuI	GTATCC	2 cut(s)	1970, 2782
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	2 cut(s)	256, 289
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	6 cut(s)	639, 1141, 1456, 1936, 2427, 2664
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	7 cut(s)	522, 1036, 1253, 1653, 1968, 2491, 2763
BveI	ACCTGC	2 cut(s)	1373, 2539
Cac8I	GCNNGC	6 cut(s)	277, 281, 630, 1264, 2742, 2753
CaiI	CAGNNNCTG	1 cut(s)	2519
CciI	TCATGA	1 cut(s)	2299
CfoI	GCGC	3 cut(s)	323, 492, 2606
Cfr10I	RCCGGY	3 cut(s)	275, 628, 966
CseI	GACGC	2 cut(s)	94, 320
Csp6I	GTAC	5 cut(s)	1967, 2001, 2021, 2294, 2677
CspAI	ACCGGT	1 cut(s)	966
CspCI	CAANNNNNGTGG	2 cut(s)	1629, 1664
CviQI	GTAC	5 cut(s)	1967, 2001, 2021, 2294, 2677
DpnI	GATC	8 cut(s)	251, 261, 799, 1095, 1347, 2225, 2331, 2592
DpnII	GATC	8 cut(s)	249, 259, 797, 1093, 1345, 2223, 2329, 2590
DraI	TTTAAA	1 cut(s)	1047
DrdI	GACNNNNNNGTC	1 cut(s)	152
DriI	GACNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	3 cut(s)	42, 397, 626
EagI	CGGCCG	1 cut(s)	626
Eam1104I	CTCTTC	4 cut(s)	427, 1485, 2549, 2808
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	4 cut(s)	427, 1485, 2549, 2808
EciI	GGCGGA	1 cut(s)	949
Ecl136II	GAGCTC	1 cut(s)	229
EclXI	CGGCCG	1 cut(s)	626
Eco147I	AGGCCT	2 cut(s)	1240, 1660
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	4 cut(s)	160, 282, 668, 2363
Eco47I	GGWCC	6 cut(s)	337, 701, 756, 1775, 2150, 2729
Eco52I	CGGCCG	1 cut(s)	626
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	513, 1362
Eco81I	CCTNAGG	2 cut(s)	149, 435
Eco88I	CYCGRG	3 cut(s)	12, 161, 332
Eco91I	GGTNACC	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	2288
EcoO109I	RGGNCCY	2 cut(s)	337, 2729
EcoO65I	GGTNACC	1 cut(s)	863
EcoRI	GAATTC	1 cut(s)	2596
EcoRII	CCWGG	9 cut(s)	1235, 1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
EcoT22I	ATGCAT	1 cut(s)	1018
EcoT38I	GRGCYC	1 cut(s)	231
FalI	AAGNNNNNCTT	2 cut(s)	787, 819
FaqI	GGGAC	4 cut(s)	152, 323, 1337, 2093
FauI	CCCGC	3 cut(s)	129, 1365, 1695
FauNDI	CATATG	3 cut(s)	1018, 1515, 2394
FblI	GTMKAC	5 cut(s)	430, 766, 1298, 1550, 2029
FokI	GGATG	6 cut(s)	626, 1148, 1443, 1923, 2434, 2671
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	7 cut(s)	24, 1091, 1182, 1221, 1532, 1863, 2163
GlaI	GCGC	3 cut(s)	322, 491, 2605
GsuI	CTGGAG	2 cut(s)	1647, 2799
HapII	CCGG	8 cut(s)	41, 276, 629, 868, 967, 2153, 2362, 2756
HgaI	GACGC	2 cut(s)	94, 320
HhaI	GCGC	3 cut(s)	323, 492, 2606
Hin1I	GRCGYC	2 cut(s)	86, 312
Hin6I	GCGC	3 cut(s)	321, 490, 2604
HinP1I	GCGC	3 cut(s)	321, 490, 2604
HincII	GTYRAC	2 cut(s)	1860, 2700
HindII	GTYRAC	2 cut(s)	1860, 2700
HpaII	CCGG	8 cut(s)	41, 276, 629, 868, 967, 2153, 2362, 2756
HphI	GGTGA	5 cut(s)	458, 798, 875, 1550, 1676
Hpy188III	TCNNGA	9 cut(s)	12, 332, 950, 1091, 1221, 1433, 1587, 1946, 2300
Hpy99I	CGWCG	4 cut(s)	88, 146, 173, 314
HpyAV	CCTTC	9 cut(s)	369, 537, 545, 819, 1212, 1227, 1326, 2294, 2792
HpyCH4III	ACNGT	8 cut(s)	380, 784, 1031, 1326, 1817, 2034, 2387, 2435
HpyCH4IV	ACGT	5 cut(s)	171, 664, 1671, 2296, 2833
HpyF10VI	GCNNNNNNNGC	9 cut(s)	41, 85, 133, 320, 355, 1069, 1696, 1804, 2579
HpySE526I	ACGT	5 cut(s)	171, 664, 1671, 2296, 2833
Hsp92I	GRCGYC	2 cut(s)	86, 312
HspAI	GCGC	3 cut(s)	321, 490, 2604
KpnI	GGTACC	1 cut(s)	1970
KroI	GCCGGC	2 cut(s)	275, 628
KroNI	GCCGGC	2 cut(s)	277, 630
Kzo9I	GATC	8 cut(s)	249, 259, 797, 1093, 1345, 2223, 2329, 2590
LmnI	GCTCC	6 cut(s)	4, 73, 919, 1271, 1948, 2380
Lsp1109I	GCAGC	7 cut(s)	145, 214, 295, 342, 543, 565, 1816
LweI	GCATC	7 cut(s)	204, 312, 620, 648, 1003, 1546, 2500
MaeI	CTAG	7 cut(s)	24, 1091, 1182, 1221, 1532, 1863, 2163
MaeII	ACGT	5 cut(s)	171, 664, 1671, 2296, 2833
MaeIII	GTNAC	4 cut(s)	863, 2407, 2464, 2718
MalI	GATC	8 cut(s)	251, 261, 799, 1095, 1347, 2225, 2331, 2592
MboI	GATC	8 cut(s)	249, 259, 797, 1093, 1345, 2223, 2329, 2590
MflI	RGATCY	2 cut(s)	797, 1345
MhlI	GDGCHC	7 cut(s)	188, 231, 351, 1179, 1677, 1701, 2385
MlyI	GAGTC	9 cut(s)	85, 91, 742, 1471, 1616, 1738, 1872, 2075, 2768
MmeI	TCCRAC	6 cut(s)	107, 119, 651, 679, 1791, 1948
Mph1103I	ATGCAT	1 cut(s)	1018
MreI	CGCCGGCG	1 cut(s)	275
MroNI	GCCGGC	2 cut(s)	275, 628
MroXI	GAANNNNTTC	1 cut(s)	1594
MseI	TTAA	9 cut(s)	237, 713, 971, 1046, 1485, 1614, 1655, 1890, 2289
MspA1I	CMGCKG	2 cut(s)	136, 556
MspCI	CTTAAG	1 cut(s)	2288
MspI	CCGG	8 cut(s)	41, 276, 629, 868, 967, 2153, 2362, 2756
Mva1269I	GAATGC	5 cut(s)	478, 1264, 1468, 1876, 2689
MvaI	CCWGG	9 cut(s)	1237, 1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
MvnI	CGCG	2 cut(s)	1972, 2606
MwoI	GCNNNNNNNGC	9 cut(s)	41, 85, 133, 320, 355, 1069, 1696, 1804, 2579
NaeI	GCCGGC	2 cut(s)	277, 630
NciI	CCSGG	1 cut(s)	869
NdeI	CATATG	3 cut(s)	1018, 1515, 2394
NdeII	GATC	8 cut(s)	249, 259, 797, 1093, 1345, 2223, 2329, 2590
NgoMIV	GCCGGC	2 cut(s)	275, 628
NlaIV	GGNNCC	6 cut(s)	339, 757, 921, 1950, 1968, 2107
NmeAIII	GCCGAG	3 cut(s)	207, 425, 604
NmuCI	GTSAC	3 cut(s)	863, 2407, 2718
NsiI	ATGCAT	1 cut(s)	1018
NspI	RCATGY	4 cut(s)	1067, 2408, 2479, 2744
NspV	TTCGAA	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	2744
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	2299
PceI	AGGCCT	2 cut(s)	1240, 1660
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PctI	GAATGC	5 cut(s)	478, 1264, 1468, 1876, 2689
PdiI	GCCGGC	2 cut(s)	277, 630
PdmI	GAANNNNTTC	1 cut(s)	1594
PfeI	GAWTC	8 cut(s)	328, 617, 1274, 1377, 1389, 1768, 2255, 2303
PflFI	GACNNNGTC	1 cut(s)	407
PinAI	ACCGGT	1 cut(s)	966
PleI	GAGTC	9 cut(s)	85, 91, 741, 1471, 1616, 1737, 1872, 2075, 2767
PpsI	GAGTC	9 cut(s)	85, 91, 741, 1471, 1616, 1737, 1872, 2075, 2767
PpuMI	RGGWCCY	2 cut(s)	337, 2729
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	2833
Psp5II	RGGWCCY	2 cut(s)	337, 2729
Psp6I	CCWGG	9 cut(s)	1235, 1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
PspEI	GGTNACC	1 cut(s)	863
PspGI	CCWGG	9 cut(s)	1235, 1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
PspN4I	GGNNCC	6 cut(s)	339, 757, 921, 1950, 1968, 2107
PspPPI	RGGWCCY	2 cut(s)	337, 2729
PstI	CTGCAG	2 cut(s)	561, 2253
PstNI	CAGNNNCTG	1 cut(s)	2519
PsuI	RGATCY	2 cut(s)	797, 1345
PsyI	GACNNNGTC	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	5 cut(s)	1968, 2002, 2022, 2295, 2678
RsaNI	GTAC	5 cut(s)	1967, 2001, 2021, 2294, 2677
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	9 cut(s)	237, 713, 971, 1046, 1485, 1614, 1655, 1890, 2289
Sau3AI	GATC	8 cut(s)	249, 259, 797, 1093, 1345, 2223, 2329, 2590
SchI	GAGTC	9 cut(s)	85, 91, 742, 1471, 1616, 1738, 1872, 2075, 2768
SduI	GDGCHC	7 cut(s)	188, 231, 351, 1179, 1677, 1701, 2385
SfaNI	GCATC	7 cut(s)	204, 312, 620, 648, 1003, 1546, 2500
SfcI	CTRYAG	7 cut(s)	557, 1228, 1332, 2030, 2249, 2259, 2733
Sfr274I	CTCGAG	1 cut(s)	332
SfuI	TTCGAA	1 cut(s)	242
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	6 cut(s)	337, 701, 756, 1775, 2150, 2729
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	5 cut(s)	128, 332, 1431, 2214, 2288
SmoI	CTYRAG	5 cut(s)	128, 332, 1431, 2214, 2288
SpeI	ACTAGT	1 cut(s)	1862
SphI	GCATGC	1 cut(s)	2744
SseBI	AGGCCT	2 cut(s)	1240, 1660
SspI	AATATT	2 cut(s)	659, 817
SspMI	CTAG	7 cut(s)	24, 1091, 1182, 1221, 1532, 1863, 2163
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	2 cut(s)	1240, 1660
TaaI	ACNGT	8 cut(s)	380, 784, 1031, 1326, 1817, 2034, 2387, 2435
TaiI	ACGT	5 cut(s)	174, 667, 1674, 2299, 2836
TaqI	TCGA	5 cut(s)	108, 242, 333, 825, 1755
TatI	WGTACW	1 cut(s)	2676
TauI	GCSGC	4 cut(s)	79, 181, 1075, 1693
TfiI	GAWTC	8 cut(s)	328, 617, 1274, 1377, 1389, 1768, 2255, 2303
Tru1I	TTAA	9 cut(s)	237, 713, 971, 1046, 1485, 1614, 1655, 1890, 2289
Tru9I	TTAA	9 cut(s)	237, 713, 971, 1046, 1485, 1614, 1655, 1890, 2289
TscAI	CASTG	7 cut(s)	522, 1036, 1260, 1653, 1968, 2491, 2770
TseFI	GTSAC	3 cut(s)	863, 2407, 2718
TseI	GCWGC	7 cut(s)	133, 202, 283, 355, 553, 556, 1804
Tsp45I	GTSAC	3 cut(s)	863, 2407, 2718
TspRI	CASTG	7 cut(s)	522, 1036, 1260, 1653, 1968, 2491, 2770
Tth111I	GACNNNGTC	1 cut(s)	407
Vha464I	CTTAAG	1 cut(s)	2288
VneI	GTGCAC	2 cut(s)	1673, 1697
VpaK11BI	GGWCC	6 cut(s)	337, 701, 756, 1775, 2150, 2729
XagI	CCTNNNNNAGG	1 cut(s)	2288
XapI	RAATTY	4 cut(s)	844, 1507, 1747, 2596
XbaI	TCTAGA	2 cut(s)	1090, 1220
XceI	RCATGY	4 cut(s)	1067, 2408, 2479, 2744
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	5 cut(s)	430, 766, 1298, 1550, 2029
XmnI	GAANNNNTTC	1 cut(s)	1594
XspI	CTAG	7 cut(s)	24, 1091, 1182, 1221, 1532, 1863, 2163
Zsp2I	ATGCAT	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.