FvH4_3g10060

kxDL motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009507
Physical Location & Seq
Reverse (-)
5842372 .. 5844934
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10060.t1

Sequence Viewer

Length: 375 bp
ATGGAGCAGCAGAATGAGAAAGAAGCGATTAGGGAAGCATCAGTGGAGGTCTCCAATGAATTCAAAACCCTAATTGATGCCCACGATTTGGATTCCCTCAAACAACTGCAGCATCTCATATTGGGGAGGTTGCAAGATGGCAATGCGGTTCTGTCACACTATAATGAAGTTTCAGAGAACTGCTTTGCTGAGGTTTCTGGAGATTTCTCTAGAAACACACGCCTTTTACGGTCTATGAAGTCGGATCTTGAATACATATTTCAGAAGTTAAGGAGCATGAAGTCAAGAATTTTGGCTACCTATCCAGACGCATTTCCAGATGACTCTAAACAAGAAGTGCATGACCAAAGACCAGACCTTGAAATGCCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KxDL

Protein Analysis

125

Amino Acids

14.35

Weight (kDa)

4.93

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KxDL PF10241 21 - 105 3e-24 Uncharacterized conserved protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 88
AciI CCGC 1 cut(s) 146
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 2 cut(s) 59, 288
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 64, 251, 362
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 7, 109
ApoI RAATTY 2 cut(s) 59, 288
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 19, 121
BccI CCATC 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 8, 110
BlsI GCNGC 2 cut(s) 9, 111
BmsI GCATC 3 cut(s) 47, 67, 121
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 19, 121
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 111
BspPI GGATC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 148
BssMI GATC 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 189
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 19, 121
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 48
CseI GACGC 1 cut(s) 317
CviAII CATG 2 cut(s) 277, 341
CviJI RGCY 1 cut(s) 296
CviKI_1 RGCY 1 cut(s) 296
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 59
FaeI CATG 2 cut(s) 280, 344
FaiI YATR 6 cut(s) 119, 162, 236, 257, 278, 342
FatI CATG 2 cut(s) 276, 340
Fnu4HI GCNGC 2 cut(s) 8, 110
Fsp4HI GCNGC 2 cut(s) 8, 110
FspBI CTAG 1 cut(s) 210
GluI GCNGC 2 cut(s) 8, 110
GsuI CTGGAG 1 cut(s) 219
HgaI GACGC 1 cut(s) 317
Hin1II CATG 2 cut(s) 280, 344
HinfI GANTC 2 cut(s) 92, 323
Hpy188I TCNGA 3 cut(s) 175, 244, 264
Hpy188III TCNNGA 6 cut(s) 198, 210, 248, 285, 305, 317
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 109, 133, 340
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 2 cut(s) 280, 344
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 4, 273
LpnPI CCDG 4 cut(s) 183, 318, 330, 366
Lsp1109I GCAGC 2 cut(s) 19, 121
LweI GCATC 3 cut(s) 47, 67, 121
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 153
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MflI RGATCY 1 cut(s) 244
MluCI AATT 3 cut(s) 59, 72, 288
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 4 cut(s) 40, 107, 120, 184
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 162
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 280, 344
NmuCI GTSAC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 2 cut(s) 9, 111
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 111
PsuI RGATCY 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 8, 110
Sau3AI GATC 1 cut(s) 244
SchI GAGTC 1 cut(s) 317
SetI ASST 5 cut(s) 51, 131, 195, 302, 360
SfaNI GCATC 3 cut(s) 47, 67, 121
SfcI CTRYAG 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 3 cut(s) 59, 72, 288
SsiI CCGC 1 cut(s) 146
SspMI CTAG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 231
TasI AATT 3 cut(s) 59, 72, 288
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 2 cut(s) 7, 109
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 4 cut(s) 72, 180, 251, 293
TspRI CASTG 1 cut(s) 48
Van91I CCANNNNNTGG 1 cut(s) 88
XapI RAATTY 2 cut(s) 59, 288
XbaI TCTAGA 1 cut(s) 209
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.