Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009507

Physical Location & Seq

Genomic Coordinates Reverse (-)

4474327 .. 4476622

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G090000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAGCAGACGGGGAAGGAAGCGACAAGGGAAGCATCAGAACAGGTATCAAATGAATTCAAAACACTGGTCGATGCTCAGGATTTGGATTCACTCAAACAATTGCAGCACCTCATATTGGGGAGATTGCAAGATGGCAATGCAGTCCTGTCACATTTTAATGAGTTTTCAGAGAACTGCTTTGCTGAGGTTGCTGGAGATTTCTCTAGACACACACGCCTATTAAGGTCTATGAAATCTGATCTTGAATACATATTTCAGAAGTTGAGGAGCATGAAGTCGAGAATTTTGGCTACCTATCCAGATGCATTTTCCGATGACTCGAAACAAGAAGTACTCGACCAGAGACCGGACCTTGAAATGCCGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KxDL

Protein Analysis

124

Amino Acids

14.18

Weight (kDa)

5.04

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29130 AT3G29130 AT3G29130 AT3G29130 AT3G29130 AT3G29130
fragaria_vesca	FvH4_3g10060
malus_domestica	MD05G1273800.v1.1 MD10G1253600.v1.1
prunus_persica	Prupe.4G090000_v2.0.a1
pyrus_communis	pycom05g25520
rosa_chinensis	RchiOBHm_Chr5g0015911
rosa_laevigata	RLG00000032231
rosa_multiflora	Rmu_sc0001878.1_g000012
rosa_roxburghii	Rroxscaffold_1G00060680
rosa_rugosa	Rorug05G0030200 Rorug05G0030300 Rorug05G0030400 Rorug05G0030500
rosa_samantha	Rh5AG123800 Rh5CG134100
rosa_wichuraiana	Rw5G010690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	367
AciI	CCGC	2 cut(s)	365, 367
AcsI	RAATTY	2 cut(s)	56, 285
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	118, 349
AgsI	TTSAA	3 cut(s)	61, 248, 359
Alw26I	GTCTC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	2 cut(s)	56, 285
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AspS9I	GGNCC	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	352
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	107, 365
BlsI	GCNGC	2 cut(s)	108, 366
BmcAI	AGTACT	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmsI	GCATC	3 cut(s)	44, 64, 295
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	2 cut(s)	78, 186
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 349
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	118, 349
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	92, 177
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	118, 349
BsmAI	GTCTC	1 cut(s)	340
Bso31I	GGTCTC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	2 cut(s)	365, 367
BspCNI	CTCAG	2 cut(s)	91, 178
BspFNI	CGCG	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	78, 186
BstDSI	CCRYGG	1 cut(s)	365
BstFNI	CGCG	1 cut(s)	367
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	352
Cfr42I	CCGCGG	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	1 cut(s)	293
CviKI_1	RGCY	1 cut(s)	293
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	2 cut(s)	78, 186
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	1 cut(s)	277
FaiI	YATR	4 cut(s)	116, 233, 254, 275
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	107, 365
Fsp4HI	GCNGC	2 cut(s)	107, 365
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	2 cut(s)	107, 365
GsuI	CTGGAG	1 cut(s)	216
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	2 cut(s)	89, 320
HpaII	CCGG	1 cut(s)	350
Hpy188I	TCNGA	5 cut(s)	40, 172, 241, 261, 316
Hpy188III	TCNNGA	5 cut(s)	80, 207, 245, 282, 302
HpyAV	CCTTC	1 cut(s)	10
HpyCH4V	TGCA	4 cut(s)	106, 130, 143, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	78, 186
Hsp92II	CATG	1 cut(s)	277
KspI	CCGCGG	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	4, 270
LpnPI	CCDG	8 cut(s)	29, 53, 65, 161, 180, 315, 356, 363
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	3 cut(s)	44, 64, 295
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MfeI	CAATTG	1 cut(s)	101
MluCI	AATT	3 cut(s)	56, 101, 285
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	3 cut(s)	122, 181, 261
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	2 cut(s)	159, 224
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	108, 366
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	352
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	159
SacII	CCGCGG	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	159, 224
SatI	GCNGC	2 cut(s)	107, 365
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	352
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	1 cut(s)	314
SetI	ASST	6 cut(s)	48, 114, 192, 230, 299, 357
SfaNI	GCATC	3 cut(s)	44, 64, 295
Sfr303I	CCGCGG	1 cut(s)	368
SgrBI	CCGCGG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	3 cut(s)	56, 101, 285
SsiI	CCGC	2 cut(s)	365, 367
SspMI	CTAG	1 cut(s)	207
TaqI	TCGA	4 cut(s)	72, 281, 323, 339
TasI	AATT	3 cut(s)	56, 101, 285
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	159, 224
Tru9I	TTAA	2 cut(s)	159, 224
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	3 cut(s)	69, 248, 290
TspRI	CASTG	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	2 cut(s)	56, 285
XbaI	TCTAGA	1 cut(s)	206
XspI	CTAG	1 cut(s)	207
ZrmI	AGTACT	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.