Rroxscaffold_1G00060680

kxDL motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009507
Physical Location & Seq
Forward (+)
82952669 .. 82956830
4162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060680.1

Sequence Viewer

Length: 417 bp
ATGGAGCAGATTGAGAAAGAAGCGATTAAGGAGGCATCAGTGGAGGTATCAAATGAATTCAAAACCCTAATCGATGCCCAGGATTTGGATTCCCTCAAACAACTGCAGCACCTCATACTAGACTGCCATAGATTGTTTATGATATCGGTTAAACTACAGAAATTGGGGAGGTTGCAAGATGGCAATGCGGTCCTGTCACACTTTAATGAAGTTTCAGAGAACTGCTTTGCTGAGGTTTCTGGAGATTTTTCTAAAAACACACGCCTTTTACGGTCTATGAAGTCTGATCTTGAATACATATTTCAGAAGTTAAGGAGCATGAAGTCAAGAATTTTGGCTACATATCCAGATGCATTTCCAGATGACTCGAAACAAGAAGTACATGACCAAAGACCAGACCTTGAAATGCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KxDL

Protein Analysis

138

Amino Acids

15.96

Weight (kDa)

5.21

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KxDL PF10241 53 - 119 9.8e-19 Uncharacterized conserved protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 85
AciI CCGC 1 cut(s) 188
AcsI RAATTY 2 cut(s) 56, 330
AfaI GTAC 1 cut(s) 381
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 3 cut(s) 61, 293, 404
AjnI CCWGG 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 56, 330
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 80
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 2 cut(s) 104, 155
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 3 cut(s) 44, 64, 340
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 80
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 85
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 273, 414
BstDEI CTNAG 1 cut(s) 231
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 2 cut(s) 104, 155
BstV1I GCAGC 1 cut(s) 118
Bsu15I ATCGAT 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 45, 410
Cfr13I GGNCC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 72
Csp6I GTAC 1 cut(s) 380
CviAII CATG 2 cut(s) 319, 383
CviJI RGCY 1 cut(s) 338
CviKI_1 RGCY 1 cut(s) 338
CviQI GTAC 1 cut(s) 380
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 78
EcoRV GATATC 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 355
FaeI CATG 2 cut(s) 322, 386
FaiI YATR 8 cut(s) 116, 129, 140, 278, 299, 320, 343, 384
FatI CATG 2 cut(s) 318, 382
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 261
Hin1II CATG 2 cut(s) 322, 386
HinfI GANTC 2 cut(s) 89, 365
Hpy188I TCNGA 3 cut(s) 217, 286, 306
Hpy188III TCNNGA 5 cut(s) 240, 290, 327, 347, 359
HpyCH4III ACNGT 2 cut(s) 273, 414
HpyCH4V TGCA 3 cut(s) 106, 175, 353
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 322, 386
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 2 cut(s) 4, 315
LpnPI CCDG 7 cut(s) 65, 92, 206, 225, 360, 372, 408
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 3 cut(s) 44, 64, 340
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 195
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MluCI AATT 3 cut(s) 56, 161, 330
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 6 cut(s) 25, 37, 104, 122, 162, 226
Mph1103I ATGCAT 1 cut(s) 355
MseI TTAA 4 cut(s) 27, 150, 204, 311
MslI CAYNNNNRTG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
NdeII GATC 1 cut(s) 286
NlaIII CATG 2 cut(s) 322, 386
NmuCI GTSAC 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 355
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 108
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 4 cut(s) 27, 150, 204, 311
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 80
SetI ASST 5 cut(s) 48, 114, 173, 237, 402
SfaNI GCATC 3 cut(s) 44, 64, 340
SfcI CTRYAG 2 cut(s) 104, 155
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 3 cut(s) 56, 161, 330
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 273, 414
TaqI TCGA 2 cut(s) 72, 368
TasI AATT 3 cut(s) 56, 161, 330
TatI WGTACW 1 cut(s) 379
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 4 cut(s) 27, 150, 204, 311
Tru9I TTAA 4 cut(s) 27, 150, 204, 311
TscAI CASTG 2 cut(s) 45, 417
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 4 cut(s) 69, 222, 293, 335
TspRI CASTG 2 cut(s) 45, 417
Van91I CCANNNNNTGG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 2 cut(s) 56, 330
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.