Rh5AG123800

kxDL motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009507
Physical Location & Seq
Reverse (-)
11529452 .. 11534539
5088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG123800.1

Sequence Viewer

Length: 264 bp
ATGCCTGTATTGGGGAGGTTGCAAGATGGCAATGCGGTCCTGTCACACTTTAATGAAGTTTCAGAGAACTGCTTTGCTGAGGTTTCTGGAGATTTCTCTAAAAACACACGCCTTTTACGGTCTATGAAGTCTGATCTTGAATACATATTTCAGAAGTTAAGGAGCATGAAGTCAAGAATTTTGGCTACCTATCCAGATGCATTTCCGGATGACTCGAAACAAGAAGTACATGACCAAAGACCAGACCTTGAAATGCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KxDL

Protein Analysis

87

Amino Acids

10.01

Weight (kDa)

5.25

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KxDL PF10241 3 - 68 5e-19 Uncharacterized conserved protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 140, 251
Aor13HI TCCGGA 1 cut(s) 205
ApoI RAATTY 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 205
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 70
BspEI TCCGGA 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 37
BssMI GATC 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 120, 261
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 227
CviAII CATG 2 cut(s) 166, 230
CviJI RGCY 1 cut(s) 185
CviKI_1 RGCY 1 cut(s) 185
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 202
FaeI CATG 2 cut(s) 169, 233
FaiI YATR 4 cut(s) 125, 146, 167, 231
FatI CATG 2 cut(s) 165, 229
FokI GGATG 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 108
HapII CCGG 1 cut(s) 206
Hin1II CATG 2 cut(s) 169, 233
HinfI GANTC 1 cut(s) 212
HpaII CCGG 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 64, 133, 153
Hpy188III TCNNGA 5 cut(s) 87, 137, 174, 194, 206
HpyCH4III ACNGT 2 cut(s) 120, 261
HpyCH4V TGCA 2 cut(s) 22, 200
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 2 cut(s) 169, 233
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 6 cut(s) 18, 53, 72, 207, 219, 255
LweI GCATC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 42
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 2 cut(s) 9, 73
Mph1103I ATGCAT 1 cut(s) 202
MroI TCCGGA 1 cut(s) 205
MseI TTAA 2 cut(s) 51, 158
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 206
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 169, 233
NmuCI GTSAC 1 cut(s) 42
NsiI ATGCAT 1 cut(s) 202
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 51, 158
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 206
SetI ASST 4 cut(s) 20, 84, 191, 249
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 35
TaaI ACNGT 2 cut(s) 120, 261
TaqI TCGA 1 cut(s) 215
TasI AATT 1 cut(s) 177
TatI WGTACW 1 cut(s) 226
Tru1I TTAA 2 cut(s) 51, 158
Tru9I TTAA 2 cut(s) 51, 158
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 69, 140, 182
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.