Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009507

Physical Location & Seq

Genomic Coordinates Reverse (-)

1938261 .. 1939735

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0030400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTGTTAGAAATTCTCTCCCTGCTCCCAACAAAAGATGCTATTAGAACAAGCATACTGTCTAAAAGATGGGAACACCTGTGGACATCACTTCCTCAATTTCAGTTTGATGAAGGACCGCTACTTAAGAGATATCTCTTGGTAAATGCTATGGATAGAGCACTTCTTTTTCGTGGCCCTGCTAATATAGAAGCTTTTGGTTTTAGTTTTACAGTGCTAGGTGATTCACATCGTGTTAATGCATGGATCTCTGCTATAGTAAAATGGAATGTTGAAGAGCTTTCTATAAGCCTGCAAATCATTGATGAACCAGTTTTATTGCCTGATTCCTTATTTACTTCTGCAACACTGGTGGTCTTAGATCTAGATATGCCCTGTGTTTTCAAGGTTCCTCGTACTATTTGCTTCTCAAGTCTAAAGTGCTTGAGTCTCAAGTCTGTGGTGTTTTCTGATGACTACTTAACCCAACAGTTGTTTTCTGGTTTCCCAATCCTGGAAGATCTATCTCTAACAGATTGCAATTGGATGAATATCAAGTTTGTTATTATTTATACTCCTAAGCTTTTGATCTTGACCATGATCAAAGGAGGTGTGGAAGTTGCGAGAGCTTCAAAATCTTCTGATGGATGTCAGATGATGGTGGTTCTAGATGATGCACCAGAACTTCTTGCCCAGCTACCTTTGTTCAATGATCTAATCACTTTGGAATTTGAAGGAAGTGTAAACATTGGTAGCAAACCATTCTTGTTGATGCTCCACAACCGTCCTTGTCTTCAAACTTTGATATTCCTTGAGGGGATTGAGGAGTCCTCAAATGTTGCTAAAGATGGAGTTTTGGAGCCTTTGCCTCCATGCTTCCTCTCACATCTGAAAGAGATTGAAGTCTATGAATTTTATGGAGACGAGGATCACATACATGCATTGAAAGTTTTGCTAAAGAATGCAATGGTTTTGGAGAAGATGACCATAACTTGGGGCACGGATTTTGAAGTGGGGCTAGAGAGGAAAAGTGATGTTCACAAACAGTTATTCGATCTCCCTAGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KxDL

Protein Analysis

349

Amino Acids

39.48

Weight (kDa)

4.91

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	2 - 32	2.1e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	76 - 176	5.2e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	80 - 252	3.8e-11	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	282 - 323	5.2e-09	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29130 AT3G29130 AT3G29130 AT3G29130 AT3G29130 AT3G29130
fragaria_vesca	FvH4_3g10060
malus_domestica	MD05G1273800.v1.1 MD10G1253600.v1.1
prunus_persica	Prupe.4G090000_v2.0.a1
pyrus_communis	pycom05g25520
rosa_chinensis	RchiOBHm_Chr5g0015911
rosa_laevigata	RLG00000032231
rosa_multiflora	Rmu_sc0001878.1_g000012
rosa_roxburghii	Rroxscaffold_1G00060680
rosa_rugosa	Rorug05G0030200 Rorug05G0030300 Rorug05G0030400 Rorug05G0030500
rosa_samantha	Rh5AG123800 Rh5CG134100
rosa_wichuraiana	Rw5G010690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	972
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	2 cut(s)	254, 915
AcsI	RAATTY	3 cut(s)	12, 707, 890
AdeI	CACNNNGTG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	493, 972
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	9 cut(s)	275, 385, 612, 688, 713, 776, 881, 925, 989
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	5 cut(s)	194, 280, 562, 608, 676
AluI	AGCT	5 cut(s)	194, 280, 562, 608, 676
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	2 cut(s)	434, 894
AlwI	GGATC	2 cut(s)	254, 915
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	3 cut(s)	12, 707, 890
AspS9I	GGNCC	2 cut(s)	116, 176
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	980
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
BbsI	GAAGAC	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	163
BccI	CCATC	4 cut(s)	63, 617, 631, 821
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	579
BcoDI	GTCTC	2 cut(s)	434, 894
BfaI	CTAG	5 cut(s)	218, 365, 647, 998, 1041
BfmI	CTRYAG	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	125
BglII	AGATCT	2 cut(s)	361, 499
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	116, 176
BmiI	GGNNCC	2 cut(s)	390, 840
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	3 cut(s)	28, 643, 741
BpiI	GAAGAC	1 cut(s)	764
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	4 cut(s)	394, 416, 445, 812
BsaBI	GATNNNNATC	2 cut(s)	228, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 972
Bse1I	ACTGG	2 cut(s)	311, 354
Bse3DI	GCAATG	1 cut(s)	951
Bse8I	GATNNNNATC	2 cut(s)	228, 530
BseBI	CCWGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	531, 632
BseJI	GATNNNNATC	2 cut(s)	228, 530
BseLI	CCNNNNNNNGG	2 cut(s)	493, 972
BseMI	GCAATG	1 cut(s)	951
BseNI	ACTGG	2 cut(s)	311, 354
BseRI	GAGGAG	1 cut(s)	818
BseSI	GKGCMC	1 cut(s)	980
BseYI	CCCAGC	1 cut(s)	672
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	493, 972
BsmAI	GTCTC	2 cut(s)	434, 894
BsmBI	CGTCTC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	946
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	163, 980
Bsp143I	GATC	8 cut(s)	246, 361, 499, 567, 579, 691, 907, 1033
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	390, 840
BspPI	GGATC	2 cut(s)	254, 915
BspQI	GCTCTTC	1 cut(s)	270
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	951
BsrI	ACTGG	2 cut(s)	311, 354
BssMI	GATC	8 cut(s)	246, 361, 499, 567, 579, 691, 907, 1033
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	5 cut(s)	60, 214, 471, 764, 1026
Bst6I	CTCTTC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	2 cut(s)	358, 558
BstF5I	GGATG	2 cut(s)	531, 632
BstKTI	GATC	8 cut(s)	249, 364, 502, 570, 582, 694, 910, 1036
BstMAI	GTCTC	2 cut(s)	434, 894
BstMBI	GATC	8 cut(s)	246, 361, 499, 567, 579, 691, 907, 1033
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	920
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	980
BstV2I	GAAGAC	1 cut(s)	764
BstX2I	RGATCY	3 cut(s)	246, 361, 499
BstYI	RGATCY	3 cut(s)	246, 361, 499
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	531, 632
BtsIMutI	CAGTG	2 cut(s)	219, 347
Cac8I	GCNNGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	116, 176
Csp6I	GTAC	1 cut(s)	396
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	4 cut(s)	243, 577, 852, 917
CviJI	RGCY	9 cut(s)	177, 194, 280, 291, 562, 608, 676, 841, 997
CviKI_1	RGCY	9 cut(s)	177, 194, 280, 291, 562, 608, 676, 841, 997
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	2 cut(s)	358, 558
DpnI	GATC	8 cut(s)	248, 363, 501, 569, 581, 693, 909, 1035
DpnII	GATC	8 cut(s)	246, 361, 499, 567, 579, 691, 907, 1033
DraIII	CACNNNGTG	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	492
EcoRV	GATATC	1 cut(s)	134
EcoT22I	ATGCAT	2 cut(s)	244, 922
Esp3I	CGTCTC	1 cut(s)	894
FaeI	CATG	4 cut(s)	246, 580, 855, 920
FatI	CATG	4 cut(s)	242, 576, 851, 916
FbaI	TGATCA	1 cut(s)	579
FokI	GGATG	2 cut(s)	538, 639
FspBI	CTAG	5 cut(s)	218, 365, 647, 998, 1041
GsaI	CCCAGC	1 cut(s)	676
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	246, 580, 855, 920
HindIII	AAGCTT	2 cut(s)	192, 560
HinfI	GANTC	4 cut(s)	224, 326, 427, 806
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	3 cut(s)	84, 724, 1018
Hpy188I	TCNGA	4 cut(s)	451, 622, 633, 870
Hpy188III	TCNNGA	3 cut(s)	365, 571, 647
Hpy8I	GTNNAC	3 cut(s)	84, 724, 1018
HpyAV	CCTTC	2 cut(s)	107, 707
HpyCH4III	ACNGT	5 cut(s)	60, 214, 471, 764, 1026
HpyCH4V	TGCA	7 cut(s)	242, 295, 344, 519, 656, 920, 944
HpyF3I	CTNAG	2 cut(s)	358, 558
Hsp92II	CATG	4 cut(s)	246, 580, 855, 920
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	8 cut(s)	246, 361, 499, 567, 579, 691, 907, 1033
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	3 cut(s)	30, 759, 838
LweI	GCATC	3 cut(s)	28, 643, 741
MaeI	CTAG	5 cut(s)	218, 365, 647, 998, 1041
MalI	GATC	8 cut(s)	248, 363, 501, 569, 581, 693, 909, 1035
MboI	GATC	8 cut(s)	246, 361, 499, 567, 579, 691, 907, 1033
MboII	GAAGA	5 cut(s)	287, 509, 609, 764, 970
MfeI	CAATTG	1 cut(s)	520
MflI	RGATCY	3 cut(s)	246, 361, 499
MhlI	GDGCHC	2 cut(s)	163, 980
MluCI	AATT	5 cut(s)	12, 98, 520, 707, 890
MlyI	GAGTC	2 cut(s)	436, 815
Mph1103I	ATGCAT	2 cut(s)	244, 922
MseI	TTAA	3 cut(s)	126, 237, 461
MslI	CAYNNNNRTG	1 cut(s)	915
MspCI	CTTAAG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	520
Mva1269I	GAATGC	1 cut(s)	946
MvaI	CCWGG	1 cut(s)	494
NdeII	GATC	8 cut(s)	246, 361, 499, 567, 579, 691, 907, 1033
NlaIII	CATG	4 cut(s)	246, 580, 855, 920
NlaIV	GGNNCC	2 cut(s)	390, 840
NsiI	ATGCAT	2 cut(s)	244, 922
NspI	RCATGY	1 cut(s)	920
PciSI	GCTCTTC	1 cut(s)	270
PctI	GAATGC	1 cut(s)	946
PfeI	GAWTC	2 cut(s)	224, 326
PflMI	CCANNNNNTGG	1 cut(s)	972
PfoI	TCCNGGA	1 cut(s)	492
PleI	GAGTC	2 cut(s)	435, 814
PpsI	GAGTC	2 cut(s)	435, 814
Psp6I	CCWGG	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	672
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	390, 840
PspPI	GGNCC	2 cut(s)	116, 176
PsuI	RGATCY	3 cut(s)	246, 361, 499
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	915
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	126, 237, 461
Sau3AI	GATC	8 cut(s)	246, 361, 499, 567, 579, 691, 907, 1033
Sau96I	GGNCC	2 cut(s)	116, 176
SchI	GAGTC	2 cut(s)	436, 815
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	2 cut(s)	163, 980
SfaNI	GCATC	3 cut(s)	28, 643, 741
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	5 cut(s)	125, 409, 424, 431, 791
SmoI	CTYRAG	5 cut(s)	125, 409, 424, 431, 791
Sse9I	AATT	5 cut(s)	12, 98, 520, 707, 890
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	5 cut(s)	218, 365, 647, 998, 1041
StyD4I	CCNGG	1 cut(s)	492
TaaI	ACNGT	5 cut(s)	60, 214, 471, 764, 1026
TaqI	TCGA	1 cut(s)	1032
TasI	AATT	5 cut(s)	12, 98, 520, 707, 890
TfiI	GAWTC	2 cut(s)	224, 326
Tru1I	TTAA	3 cut(s)	126, 237, 461
Tru9I	TTAA	3 cut(s)	126, 237, 461
TscAI	CASTG	2 cut(s)	219, 354
TspDTI	ATGAA	4 cut(s)	126, 321, 542, 903
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	2 cut(s)	219, 354
Van91I	CCANNNNNTGG	1 cut(s)	972
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	3 cut(s)	12, 707, 890
XbaI	TCTAGA	2 cut(s)	364, 646
XceI	RCATGY	1 cut(s)	920
XspI	CTAG	5 cut(s)	218, 365, 647, 998, 1041
Zsp2I	ATGCAT	2 cut(s)	244, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.