Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008663

Physical Location & Seq

Genomic Coordinates Reverse (-)

7059389 .. 7064338

Gene Structure 4950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G128300.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCAGCATCTTCCAGCCCGCCTGGTAAAGTCTCTGTCTGCTACTTCTTTACCATGCACCACTACCCTTCAAGAACTTGCCTCTGCTCACCCCAAAGGTGTTGCGAGGGTCGTCTTGAAAAAAGGGAAGACACAATTATTCAAGGATGGAAGCCCAATGGTTTACAGTGGAGCAGTTGATAGAATAATTGGTAGACCACCACCTAGGAGTGGAGACATTGTGCTGGTAGCTGATGGGGCAGAAAAACCAATAGGCTGGGGCATGTATAATTCCGTCTCCATGTTCTGTGTTCGGCTGATGCAGCTGGAAGAGGAAGCAACGAGGGATTTGTCATGTGCATTGAACATGGAGAAACTGCTTGAGACAAGAATTAATGAAGCTATAGAACTACGTAAGAGTTTGGGGCTTCCATCAGCTAGTACAAATGCATTCCGTCTTGTCAATAGTGAAGGAGACAGATTGTCGGGACTAATAGTTGATGTATTTGGAGATGTGGCAGTAATAGCATCATCTGCTGCTTGGGTTGAGAAGTACAAACCAGAAGTAGAGGCTTCTGTTGGTAGAATTGATGAAATTAATTATATAAACTGGAGACCCTCTTCGGAAGTTTTAAAAGAAGAAGGATTGGATGCGTCAAATTACAAGGAAAGGGATCCATCTATTTGTCCTCAAAGAACAAAGGTTACGGAAAACGGGATTTTTTATGCCATTTCGCTTGAGGGACAAAAGACAGGGTTTTATGCCGATCAGCGTGAAAACCGTCAATTTATATCAACAATTTCAGATGGTCAGAGAGTTCTTGATATGTTCTGCTACAGTGGTGGTTTTGCTCTAAATGCTGCACGAGGGGGTGCTGTGAATGTCATTGGTGTCGATTCATCATTGCCTGCAGTTGAGCTAGCTAAAGAAAATATTGTCCTTAACAACATGGATCCAGGAAGAATAACATTTTTGAGAGAAGATGCAAGTGAGTTTATGAAGGGTGCTCTTTCTAGGAATGAATCATGGGATATTGTCATTTTAGATCCTCCAAAACTAGCACCACGAAAGAAGGCTTTACAAAATGCATCAGGCATGTATAGAAATCTAAATTCATTAGCAATGCAACTGACAAAGAGAGGTGGTCTTCTCATGACTTGTTCATGTTCAGGAGCTATGACGCAAAGTGGGATGTTCTTGCGCATTCTTCAGGGTGCAGCTTCAGCAGCAGGGAGAAAAATAACCATTCTGCGGGAGGCTGGAGCAGCATGTGATCATCCCATTGACCCATCCTACCCTGAAGGCAAATACCTTTCAAACATCCTTCTGAGAGTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_SAM

Protein Analysis

440

Amino Acids

47.84

Weight (kDa)

8.32

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54310
fragaria_vesca	FvH4_3g14100 FvH4_3g14100
malus_domestica	MD10G1216400.v1.1
prunus_persica	Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1
pyrus_communis	pycom10g18240
rosa_chinensis	RchiOBHm_Chr5g0023411
rosa_laevigata	RLG00000032720
rosa_multiflora	Rmu_sc0004629.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055640 Rroxscaffold_1G00055930
rosa_rugosa	Rorug05G0079000
rosa_samantha	Rh5AG165900 Rh5BG165100 Rh5CG180000 Rh5DG166600
rosa_wichuraiana	Rw5G014930 Rw5G015090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1181
AccI	GTMKAC	1 cut(s)	193
AciI	CCGC	2 cut(s)	19, 1231
AclWI	GGATC	5 cut(s)	647, 660, 926, 939, 1019
AcsI	RAATTY	1 cut(s)	1090
AcuI	CTGAAG	3 cut(s)	1172, 1185, 1299
AfaI	GTAC	2 cut(s)	421, 533
AfiI	CCNNNNNNNGG	2 cut(s)	209, 1230
AgsI	TTSAA	5 cut(s)	71, 118, 142, 343, 1296
AhdI	GACNNNNNGTC	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	21, 934
AluBI	AGCT	8 cut(s)	230, 304, 380, 416, 898, 902, 1154, 1199
AluI	AGCT	8 cut(s)	230, 304, 380, 416, 898, 902, 1154, 1199
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	6 cut(s)	36, 207, 280, 356, 447, 586
AlwI	GGATC	5 cut(s)	647, 660, 926, 939, 1019
ApeKI	GCWGC	7 cut(s)	4, 301, 515, 839, 1196, 1205, 1244
ApoI	RAATTY	1 cut(s)	1090
AseI	ATTAAT	2 cut(s)	372, 576
AspA2I	CCTAGG	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	1182
AsuHPI	GGTGA	1 cut(s)	80
AsuNHI	GCTAGC	1 cut(s)	898
AvrII	CCTAGG	1 cut(s)	203
BamHI	GGATCC	2 cut(s)	652, 931
BauI	CACGAG	1 cut(s)	843
BbsI	GAAGAC	2 cut(s)	134, 1118
Bbv12I	GWGCWC	1 cut(s)	988
BbvI	GCAGC	7 cut(s)	16, 313, 502, 826, 1208, 1217, 1256
BccI	CCATC	6 cut(s)	140, 227, 418, 664, 779, 1276
BciT130I	CCWGG	2 cut(s)	23, 936
BclI	TGATCA	1 cut(s)	1252
BcoDI	GTCTC	6 cut(s)	36, 207, 280, 356, 447, 586
BfaI	CTAG	5 cut(s)	204, 417, 899, 993, 1037
BfmI	CTRYAG	3 cut(s)	381, 814, 888
BisI	GCNGC	7 cut(s)	5, 302, 516, 840, 1197, 1206, 1245
BlnI	CCTAGG	1 cut(s)	203
BlsI	GCNGC	7 cut(s)	6, 303, 517, 841, 1198, 1207, 1246
Bme1390I	CCNGG	2 cut(s)	23, 936
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	654, 933
BmrFI	CCNGG	2 cut(s)	23, 936
BmsI	GCATC	6 cut(s)	16, 288, 515, 619, 952, 1076
BmtI	GCTAGC	1 cut(s)	902
BpiI	GAAGAC	2 cut(s)	134, 1118
BpmI	CTGGAG	2 cut(s)	610, 1260
BpuEI	CTTGAG	2 cut(s)	380, 737
BsaAI	YACGTR	1 cut(s)	392
BsaI	GGTCTC	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 1230
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	2 cut(s)	881, 1107
BseBI	CCWGG	2 cut(s)	23, 936
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	6 cut(s)	151, 634, 1176, 1255, 1268, 1299
BseLI	CCNNNNNNNGG	2 cut(s)	209, 1230
BseMI	GCAATG	2 cut(s)	881, 1107
BseMII	CTCAG	1 cut(s)	1298
BseNI	ACTGG	1 cut(s)	593
BseXI	GCAGC	7 cut(s)	16, 313, 502, 826, 1208, 1217, 1256
BseYI	CCCAGC	1 cut(s)	255
BsgI	GTGCAG	2 cut(s)	825, 1215
BsiHKAI	GWGCWC	1 cut(s)	988
BslFI	GGGAC	2 cut(s)	480, 735
BslI	CCNNNNNNNGG	2 cut(s)	209, 1230
BsmAI	GTCTC	6 cut(s)	36, 207, 280, 356, 447, 586
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	2 cut(s)	480, 735
BsmI	GAATGC	2 cut(s)	428, 1182
Bso31I	GGTCTC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	988
Bsp143I	GATC	5 cut(s)	652, 745, 931, 1024, 1252
BspACI	CCGC	2 cut(s)	19, 1231
BspCNI	CTCAG	1 cut(s)	1299
BspHI	TCATGA	1 cut(s)	1131
BspLI	GGNNCC	2 cut(s)	654, 933
BspMAI	CTGCAG	1 cut(s)	892
BspOI	GCTAGC	1 cut(s)	902
BspPI	GGATC	5 cut(s)	647, 660, 926, 939, 1019
BspTNI	GGTCTC	1 cut(s)	586
BsrDI	GCAATG	2 cut(s)	881, 1107
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	5 cut(s)	652, 745, 931, 1024, 1252
BssSI	CACGAG	1 cut(s)	843
BssT1I	CCWWGG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	843
Bst2UI	CCWGG	2 cut(s)	23, 936
Bst4CI	ACNGT	3 cut(s)	167, 761, 818
Bst6I	CTCTTC	2 cut(s)	303, 604
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	19, 888, 900
BstDEI	CTNAG	1 cut(s)	1307
BstF5I	GGATG	6 cut(s)	151, 634, 1176, 1255, 1268, 1299
BstHHI	GCGC	1 cut(s)	1182
BstKTI	GATC	5 cut(s)	655, 748, 934, 1027, 1255
BstMAI	GTCTC	6 cut(s)	36, 207, 280, 356, 447, 586
BstMBI	GATC	5 cut(s)	652, 745, 931, 1024, 1252
BstMWI	GCNNNNNNNGC	8 cut(s)	236, 301, 503, 512, 836, 1202, 1205, 1244
BstNI	CCWGG	2 cut(s)	23, 936
BstNSI	RCATGY	3 cut(s)	265, 1078, 1251
BstSCI	CCNGG	2 cut(s)	21, 934
BstSFI	CTRYAG	3 cut(s)	381, 814, 888
BstSNI	TACGTA	1 cut(s)	392
BstV1I	GCAGC	7 cut(s)	16, 313, 502, 826, 1208, 1217, 1256
BstV2I	GAAGAC	2 cut(s)	134, 1118
BstX2I	RGATCY	3 cut(s)	652, 931, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	3 cut(s)	652, 931, 1024
BtsCI	GGATG	6 cut(s)	151, 634, 1176, 1255, 1268, 1299
BtsIMutI	CAGTG	2 cut(s)	172, 823
Cac8I	GCNNGC	3 cut(s)	19, 888, 900
CciI	TCATGA	1 cut(s)	1131
CfoI	GCGC	1 cut(s)	1182
CseI	GACGC	2 cut(s)	621, 1168
Csp6I	GTAC	2 cut(s)	420, 532
CviQI	GTAC	2 cut(s)	420, 532
DdeI	CTNAG	1 cut(s)	1307
DpnI	GATC	5 cut(s)	654, 747, 933, 1026, 1254
DpnII	GATC	5 cut(s)	652, 745, 931, 1024, 1252
DraI	TTTAAA	1 cut(s)	612
DriI	GACNNNNNGTC	1 cut(s)	460
Eam1104I	CTCTTC	2 cut(s)	303, 604
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	2 cut(s)	303, 604
Eco105I	TACGTA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	586
Eco57I	CTGAAG	3 cut(s)	1172, 1185, 1299
EcoRII	CCWGG	2 cut(s)	21, 934
EcoT14I	CCWWGG	1 cut(s)	203
EcoT22I	ATGCAT	2 cut(s)	430, 1069
ErhI	CCWWGG	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	280
FaqI	GGGAC	2 cut(s)	480, 735
FauI	CCCGC	2 cut(s)	26, 1224
FbaI	TGATCA	1 cut(s)	1252
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	7 cut(s)	5, 302, 516, 840, 1197, 1206, 1245
FokI	GGATG	6 cut(s)	158, 641, 1183, 1242, 1255, 1286
Fsp4HI	GCNGC	7 cut(s)	5, 302, 516, 840, 1197, 1206, 1245
FspBI	CTAG	5 cut(s)	204, 417, 899, 993, 1037
FspI	TGCGCA	1 cut(s)	1181
GlaI	GCGC	1 cut(s)	1181
GluI	GCNGC	7 cut(s)	5, 302, 516, 840, 1197, 1206, 1245
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	2 cut(s)	610, 1260
HgaI	GACGC	2 cut(s)	621, 1168
HhaI	GCGC	1 cut(s)	1182
Hin6I	GCGC	1 cut(s)	1180
HinP1I	GCGC	1 cut(s)	1180
HinfI	GANTC	2 cut(s)	875, 1001
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	163, 194
Hpy188I	TCNGA	4 cut(s)	604, 784, 792, 1308
Hpy188III	TCNNGA	6 cut(s)	71, 115, 465, 800, 1132, 1149
Hpy8I	GTNNAC	2 cut(s)	163, 194
HpyAV	CCTTC	7 cut(s)	77, 443, 614, 973, 1045, 1274, 1313
HpyCH4III	ACNGT	3 cut(s)	167, 761, 818
HpyCH4IV	ACGT	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	8 cut(s)	236, 301, 503, 512, 836, 1202, 1205, 1244
HpyF3I	CTNAG	1 cut(s)	1307
HpySE526I	ACGT	1 cut(s)	391
HspAI	GCGC	1 cut(s)	1180
Ksp22I	TGATCA	1 cut(s)	1252
Kzo9I	GATC	5 cut(s)	652, 745, 931, 1024, 1252
LmnI	GCTCC	3 cut(s)	170, 1151, 1241
Lsp1109I	GCAGC	7 cut(s)	16, 313, 502, 826, 1208, 1217, 1256
LweI	GCATC	6 cut(s)	16, 288, 515, 619, 952, 1076
MaeI	CTAG	5 cut(s)	204, 417, 899, 993, 1037
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	5 cut(s)	654, 747, 933, 1026, 1254
MboI	GATC	5 cut(s)	652, 745, 931, 1024, 1252
MboII	GAAGA	8 cut(s)	139, 320, 591, 629, 951, 971, 1118, 1178
MflI	RGATCY	3 cut(s)	652, 931, 1024
MhlI	GDGCHC	1 cut(s)	988
Mph1103I	ATGCAT	2 cut(s)	430, 1069
MseI	TTAA	4 cut(s)	372, 576, 611, 921
MspA1I	CMGCKG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	23, 936
Mva1269I	GAATGC	2 cut(s)	428, 1182
MvaI	CCWGG	2 cut(s)	23, 936
MwoI	GCNNNNNNNGC	8 cut(s)	236, 301, 503, 512, 836, 1202, 1205, 1244
NdeII	GATC	5 cut(s)	652, 745, 931, 1024, 1252
NheI	GCTAGC	1 cut(s)	898
NlaIV	GGNNCC	2 cut(s)	654, 933
NsbI	TGCGCA	1 cut(s)	1181
NsiI	ATGCAT	2 cut(s)	430, 1069
NspI	RCATGY	3 cut(s)	265, 1078, 1251
PagI	TCATGA	1 cut(s)	1131
PctI	GAATGC	2 cut(s)	428, 1182
PfeI	GAWTC	2 cut(s)	875, 1001
PfoI	TCCNGGA	1 cut(s)	934
PkrI	GCNGC	7 cut(s)	6, 303, 517, 841, 1198, 1207, 1246
Ppu21I	YACGTR	1 cut(s)	392
PshBI	ATTAAT	2 cut(s)	372, 576
Psp6I	CCWGG	2 cut(s)	21, 934
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	2 cut(s)	21, 934
PspN4I	GGNNCC	2 cut(s)	654, 933
PsrI	GAACNNNNNNTAC	2 cut(s)	667, 699
PstI	CTGCAG	1 cut(s)	892
PsuI	RGATCY	3 cut(s)	652, 931, 1024
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	421, 533
RsaNI	GTAC	2 cut(s)	420, 532
SaqAI	TTAA	4 cut(s)	372, 576, 611, 921
SatI	GCNGC	7 cut(s)	5, 302, 516, 840, 1197, 1206, 1245
Sau3AI	GATC	5 cut(s)	652, 745, 931, 1024, 1252
ScrFI	CCNGG	2 cut(s)	23, 936
SduI	GDGCHC	1 cut(s)	988
SfaNI	GCATC	6 cut(s)	16, 288, 515, 619, 952, 1076
SfcI	CTRYAG	3 cut(s)	381, 814, 888
SmlI	CTYRAG	2 cut(s)	359, 716
SmoI	CTYRAG	2 cut(s)	359, 716
SnaBI	TACGTA	1 cut(s)	392
SsiI	CCGC	2 cut(s)	19, 1231
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	5 cut(s)	204, 417, 899, 993, 1037
StyD4I	CCNGG	2 cut(s)	21, 934
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	3 cut(s)	167, 761, 818
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	873
TatI	WGTACW	2 cut(s)	419, 531
TfiI	GAWTC	2 cut(s)	875, 1001
Tru1I	TTAA	4 cut(s)	372, 576, 611, 921
Tru9I	TTAA	4 cut(s)	372, 576, 611, 921
TscAI	CASTG	2 cut(s)	172, 823
TseI	GCWGC	7 cut(s)	4, 301, 515, 839, 1196, 1205, 1244
TspDTI	ATGAA	7 cut(s)	390, 585, 867, 992, 1014, 1083, 1131
TspGWI	ACGGA	3 cut(s)	262, 422, 701
TspRI	CASTG	2 cut(s)	172, 823
VspI	ATTAAT	2 cut(s)	372, 576
XapI	RAATTY	1 cut(s)	1090
XceI	RCATGY	3 cut(s)	265, 1078, 1251
XmaJI	CCTAGG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	193
XspI	CTAG	5 cut(s)	204, 417, 899, 993, 1037
Zsp2I	ATGCAT	2 cut(s)	430, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.