Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004629.1

Orthogroup ID

OG0008663

Physical Location & Seq

Genomic Coordinates Forward (+)

14043 .. 17711

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004629.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atgcagcattttccagcccgcctgttaaagtctctgtctacttctacttccttaccatgcaccaccactacccttcaagaacttgcttctgctcaccctaaaggtgttgcaagggttgtactcaagaaggggaagacacaactattcaaggatggaagtccaatggtttatagtggagcagttgatagaataattggaagaccgccaccaagaactggagatgttgtgctagtagctgatggagcagaaaagccaatagggtggggcatgtataattcagtctccatgttctgtgtccggcttatgcagctggatgaggaagcaataagggattgttcatgtgcattgaatatggagaaactgcttgagacaagaattaatgaagctatagagctacgtaagagtttggggcttccatcagctagtacaaatgcatttcgtcttgtcaatagtgaaggagacagattatcaggccttataattgacatatttggagatgtagcagtaatagcatcatctgccgcttgggttgagaagtacaaagcagaaatagaggcttgtgttggtagaatcaatgaaattaatcacatcaactggagaccgtctgtggaaattttaaaagaagaaggattggatgtgtcaaatttgaaggaaatggatccatctatttgccctcagagaacaaaggttatggaaaacgggattttttatgccatttcacttgaagggcagaagacagggttctatgctgatcagcgtgaaaaccgcaaattcatatcaacaatttcagacaatcagaaagttcttgatatctgctgctatagtggtggttttgcgctaaatgctgcacgaggtggtgctgtgaatgtcacaggtgttgactcatccttgggtgcaatcgaactagctaaagaaaatattgctcttaacaacatggatccaggaataatatcatttgtgaaagaagatgcaagtgagtttatgaagggtgctctttctaggaatgaatcatttgatattgtcatcttagatcctcctaaactagcaccacgaaagaaggttttacaaaatgcatcaggcatgtatagaaatttaaattcattagcaatgcaattgacaaggaaaggtggccttctcatgacttgttcgtgttcaggagcgatgacccaaagtgggacgttcttgcgcattcttcaggcaagttctatttttctgcagctagcaccatcatcatgcctccactttcatcttcttcttagattctgttataacttgagaatctcctgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_SAM

Protein Analysis

429

Amino Acids

46.92

Weight (kDa)

8.35

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54310
fragaria_vesca	FvH4_3g14100 FvH4_3g14100
malus_domestica	MD10G1216400.v1.1
prunus_persica	Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1
pyrus_communis	pycom10g18240
rosa_chinensis	RchiOBHm_Chr5g0023411
rosa_laevigata	RLG00000032720
rosa_multiflora	Rmu_sc0004629.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055640 Rroxscaffold_1G00055930
rosa_rugosa	Rorug05G0079000
rosa_samantha	Rh5AG165900 Rh5BG165100 Rh5CG180000 Rh5DG166600
rosa_wichuraiana	Rw5G014930 Rw5G015090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	479, 1269
Acc16I	TGCGCA	1 cut(s)	1187
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	4 cut(s)	19, 203, 522, 766
AclWI	GGATC	5 cut(s)	653, 666, 932, 945, 1025
AcsI	RAATTY	5 cut(s)	612, 643, 770, 1090, 1096
AcuI	CTGAAG	1 cut(s)	1178
AdeI	CACNNNGTG	1 cut(s)	854
AfaI	GTAC	3 cut(s)	120, 427, 539
AfiI	CCNNNNNNNGG	2 cut(s)	215, 1173
AgsI	TTSAA	5 cut(s)	77, 148, 349, 649, 725
AjnI	CCWGG	1 cut(s)	940
AluBI	AGCT	7 cut(s)	236, 310, 386, 394, 422, 908, 1219
AluI	AGCT	7 cut(s)	236, 310, 386, 394, 422, 908, 1219
Alw21I	GWGCWC	1 cut(s)	994
Alw26I	GTCTC	5 cut(s)	36, 286, 362, 453, 592
AlwI	GGATC	5 cut(s)	653, 666, 932, 945, 1025
AoxI	GGCC	2 cut(s)	472, 1129
ApeKI	GCWGC	5 cut(s)	4, 307, 816, 845, 1216
ApoI	RAATTY	5 cut(s)	612, 643, 770, 1090, 1096
AseI	ATTAAT	2 cut(s)	378, 582
AspLEI	GCGC	2 cut(s)	838, 1188
AsuHPI	GGTGA	1 cut(s)	86
AsuNHI	GCTAGC	1 cut(s)	1219
BamHI	GGATCC	2 cut(s)	658, 937
BauI	CACGAG	1 cut(s)	849
BbsI	GAAGAC	3 cut(s)	140, 205, 740
Bbv12I	GWGCWC	1 cut(s)	994
BbvI	GCAGC	5 cut(s)	16, 319, 803, 832, 1228
BccI	CCATC	5 cut(s)	146, 233, 424, 670, 1234
BciT130I	CCWGG	1 cut(s)	942
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	5 cut(s)	36, 286, 362, 453, 592
BfaI	CTAG	6 cut(s)	230, 423, 905, 999, 1043, 1220
BfmI	CTRYAG	3 cut(s)	387, 820, 1214
BisI	GCNGC	6 cut(s)	5, 308, 522, 817, 846, 1217
BlsI	GCNGC	6 cut(s)	6, 309, 523, 818, 847, 1218
Bme1390I	CCNGG	1 cut(s)	942
BmiI	GGNNCC	2 cut(s)	660, 939
BmrFI	CCNGG	1 cut(s)	942
BmsI	GCATC	3 cut(s)	521, 958, 1082
BmtI	GCTAGC	1 cut(s)	1223
BpiI	GAAGAC	3 cut(s)	140, 205, 740
BpmI	CTGGAG	2 cut(s)	237, 616
BpuEI	CTTGAG	2 cut(s)	107, 386
BsaAI	YACGTR	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	888
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 1173
Bse1I	ACTGG	2 cut(s)	220, 599
Bse3DI	GCAATG	1 cut(s)	1113
BseBI	CCWGG	1 cut(s)	942
BseDI	CCNNGG	1 cut(s)	888
BseGI	GGATG	4 cut(s)	157, 319, 640, 884
BseLI	CCNNNNNNNGG	2 cut(s)	215, 1173
BseMI	GCAATG	1 cut(s)	1113
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	2 cut(s)	220, 599
BseXI	GCAGC	5 cut(s)	16, 319, 803, 832, 1228
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	2 cut(s)	474, 1131
BsiHKAI	GWGCWC	1 cut(s)	994
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	1189
BslI	CCNNNNNNNGG	2 cut(s)	215, 1173
BsmAI	GTCTC	5 cut(s)	36, 286, 362, 453, 592
BsmFI	GGGAC	1 cut(s)	1189
BsmI	GAATGC	1 cut(s)	1188
BsnI	GGCC	2 cut(s)	474, 1131
Bso31I	GGTCTC	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp143I	GATC	4 cut(s)	658, 751, 937, 1030
BspACI	CCGC	4 cut(s)	19, 203, 522, 766
BspANI	GGCC	2 cut(s)	474, 1131
BspCNI	CTCAG	1 cut(s)	688
BspHI	TCATGA	1 cut(s)	1137
BspLI	GGNNCC	2 cut(s)	660, 939
BspMAI	CTGCAG	1 cut(s)	1218
BspOI	GCTAGC	1 cut(s)	1223
BspPI	GGATC	5 cut(s)	653, 666, 932, 945, 1025
BspTNI	GGTCTC	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	1113
BsrI	ACTGG	2 cut(s)	220, 599
BssECI	CCNNGG	1 cut(s)	888
BssMI	GATC	4 cut(s)	658, 751, 937, 1030
BssSI	CACGAG	1 cut(s)	849
BssT1I	CCWWGG	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	849
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	1 cut(s)	603
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	19, 1221
BstDEI	CTNAG	3 cut(s)	675, 1027, 1256
BstF5I	GGATG	4 cut(s)	157, 319, 640, 884
BstHHI	GCGC	2 cut(s)	838, 1188
BstKTI	GATC	4 cut(s)	661, 754, 940, 1033
BstMAI	GTCTC	5 cut(s)	36, 286, 362, 453, 592
BstMBI	GATC	4 cut(s)	658, 751, 937, 1030
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 307, 509, 518, 842
BstNI	CCWGG	1 cut(s)	942
BstNSI	RCATGY	2 cut(s)	271, 1084
BstSCI	CCNGG	1 cut(s)	940
BstSFI	CTRYAG	3 cut(s)	387, 820, 1214
BstSNI	TACGTA	1 cut(s)	398
BstV1I	GCAGC	5 cut(s)	16, 319, 803, 832, 1228
BstV2I	GAAGAC	3 cut(s)	140, 205, 740
BstX2I	RGATCY	3 cut(s)	658, 937, 1030
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	3 cut(s)	658, 937, 1030
BsuRI	GGCC	2 cut(s)	474, 1131
BtgZI	GCGATG	1 cut(s)	1175
BtsCI	GGATG	4 cut(s)	157, 319, 640, 884
Cac8I	GCNNGC	2 cut(s)	19, 1221
CciI	TCATGA	1 cut(s)	1137
CfoI	GCGC	2 cut(s)	838, 1188
Csp6I	GTAC	3 cut(s)	119, 426, 538
CviAII	CATG	8 cut(s)	57, 268, 286, 339, 934, 1081, 1138, 1233
CviQI	GTAC	3 cut(s)	119, 426, 538
DdeI	CTNAG	3 cut(s)	675, 1027, 1256
DpnI	GATC	4 cut(s)	660, 753, 939, 1032
DpnII	GATC	4 cut(s)	658, 751, 937, 1030
DraI	TTTAAA	2 cut(s)	618, 1095
DraIII	CACNNNGTG	1 cut(s)	854
Eco105I	TACGTA	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	888
Eco147I	AGGCCT	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	592
Eco32I	GATATC	1 cut(s)	811
Eco57I	CTGAAG	1 cut(s)	1178
EcoRII	CCWGG	1 cut(s)	940
EcoRV	GATATC	1 cut(s)	811
EcoT14I	CCWWGG	1 cut(s)	888
EcoT22I	ATGCAT	2 cut(s)	436, 1075
ErhI	CCWWGG	1 cut(s)	888
FaeI	CATG	8 cut(s)	60, 271, 289, 342, 937, 1084, 1141, 1236
FalI	AAGNNNNNCTT	2 cut(s)	1116, 1148
FaqI	GGGAC	1 cut(s)	1189
FatI	CATG	8 cut(s)	56, 267, 285, 338, 933, 1080, 1137, 1232
FauI	CCCGC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	6 cut(s)	5, 308, 522, 817, 846, 1217
FokI	GGATG	4 cut(s)	164, 326, 647, 871
Fsp4HI	GCNGC	6 cut(s)	5, 308, 522, 817, 846, 1217
FspBI	CTAG	6 cut(s)	230, 423, 905, 999, 1043, 1220
FspI	TGCGCA	1 cut(s)	1187
GlaI	GCGC	2 cut(s)	837, 1187
GluI	GCNGC	6 cut(s)	5, 308, 522, 817, 846, 1217
GsuI	CTGGAG	2 cut(s)	237, 616
HaeIII	GGCC	2 cut(s)	474, 1131
HapII	CCGG	1 cut(s)	298
HhaI	GCGC	2 cut(s)	838, 1188
Hin1II	CATG	8 cut(s)	60, 271, 289, 342, 937, 1084, 1141, 1236
Hin6I	GCGC	2 cut(s)	836, 1186
HinP1I	GCGC	2 cut(s)	836, 1186
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HinfI	GANTC	5 cut(s)	570, 881, 1007, 1260, 1278
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	39, 880
Hpy188I	TCNGA	3 cut(s)	678, 790, 798
Hpy188III	TCNNGA	5 cut(s)	77, 124, 806, 1138, 1155
Hpy8I	GTNNAC	2 cut(s)	39, 880
HpyAV	CCTTC	9 cut(s)	83, 121, 449, 620, 643, 719, 979, 1051, 1142
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4IV	ACGT	2 cut(s)	397, 1178
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 307, 509, 518, 842
HpyF3I	CTNAG	3 cut(s)	675, 1027, 1256
HpySE526I	ACGT	2 cut(s)	397, 1178
Hsp92II	CATG	8 cut(s)	60, 271, 289, 342, 937, 1084, 1141, 1236
HspAI	GCGC	2 cut(s)	836, 1186
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	658, 751, 937, 1030
LmnI	GCTCC	3 cut(s)	176, 242, 1157
Lsp1109I	GCAGC	5 cut(s)	16, 319, 803, 832, 1228
LweI	GCATC	3 cut(s)	521, 958, 1082
MaeI	CTAG	6 cut(s)	230, 423, 905, 999, 1043, 1220
MaeII	ACGT	2 cut(s)	397, 1178
MaeIII	GTNAC	1 cut(s)	868
MalI	GATC	4 cut(s)	660, 753, 939, 1032
MboI	GATC	4 cut(s)	658, 751, 937, 1030
MboII	GAAGA	8 cut(s)	145, 210, 635, 745, 977, 1184, 1241, 1244
MfeI	CAATTG	1 cut(s)	1112
MflI	RGATCY	3 cut(s)	658, 937, 1030
MhlI	GDGCHC	1 cut(s)	994
MlyI	GAGTC	1 cut(s)	875
MnlI	CCTC	6 cut(s)	310, 547, 684, 845, 1044, 1247
Mph1103I	ATGCAT	2 cut(s)	436, 1075
MseI	TTAA	7 cut(s)	26, 378, 582, 617, 927, 1094, 1288
MslI	CAYNNNNRTG	1 cut(s)	1231
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	942
MunI	CAATTG	1 cut(s)	1112
Mva1269I	GAATGC	1 cut(s)	1188
MvaI	CCWGG	1 cut(s)	942
MwoI	GCNNNNNNNGC	5 cut(s)	242, 307, 509, 518, 842
NdeII	GATC	4 cut(s)	658, 751, 937, 1030
NheI	GCTAGC	1 cut(s)	1219
NlaIII	CATG	8 cut(s)	60, 271, 289, 342, 937, 1084, 1141, 1236
NlaIV	GGNNCC	2 cut(s)	660, 939
NmuCI	GTSAC	1 cut(s)	868
NsbI	TGCGCA	1 cut(s)	1187
NsiI	ATGCAT	2 cut(s)	436, 1075
NspI	RCATGY	2 cut(s)	271, 1084
PagI	TCATGA	1 cut(s)	1137
PceI	AGGCCT	1 cut(s)	474
PctI	GAATGC	1 cut(s)	1188
PfeI	GAWTC	4 cut(s)	570, 1007, 1260, 1278
PflMI	CCANNNNNTGG	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	940
PkrI	GCNGC	6 cut(s)	6, 309, 523, 818, 847, 1218
PleI	GAGTC	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	875
Ppu21I	YACGTR	1 cut(s)	398
PshBI	ATTAAT	2 cut(s)	378, 582
PsiI	TTATAA	2 cut(s)	479, 1269
Psp6I	CCWGG	1 cut(s)	940
PspGI	CCWGG	1 cut(s)	940
PspN4I	GGNNCC	2 cut(s)	660, 939
PstI	CTGCAG	1 cut(s)	1218
PsuI	RGATCY	3 cut(s)	658, 937, 1030
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	3 cut(s)	120, 427, 539
RsaNI	GTAC	3 cut(s)	119, 426, 538
RseI	CAYNNNNRTG	1 cut(s)	1231
SaqAI	TTAA	7 cut(s)	26, 378, 582, 617, 927, 1094, 1288
SatI	GCNGC	6 cut(s)	5, 308, 522, 817, 846, 1217
Sau3AI	GATC	4 cut(s)	658, 751, 937, 1030
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	1 cut(s)	942
SduI	GDGCHC	1 cut(s)	994
SfaNI	GCATC	3 cut(s)	521, 958, 1082
SfcI	CTRYAG	3 cut(s)	387, 820, 1214
SmiI	ATTTAAAT	1 cut(s)	1095
SmiMI	CAYNNNNRTG	1 cut(s)	1231
SmlI	CTYRAG	3 cut(s)	122, 365, 1273
SmoI	CTYRAG	3 cut(s)	122, 365, 1273
SnaBI	TACGTA	1 cut(s)	398
SseBI	AGGCCT	1 cut(s)	474
SsiI	CCGC	4 cut(s)	19, 203, 522, 766
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	6 cut(s)	230, 423, 905, 999, 1043, 1220
StuI	AGGCCT	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	940
StyI	CCWWGG	1 cut(s)	888
SwaI	ATTTAAAT	1 cut(s)	1095
TaaI	ACNGT	1 cut(s)	603
TaiI	ACGT	2 cut(s)	400, 1181
TaqI	TCGA	1 cut(s)	900
TatI	WGTACW	3 cut(s)	118, 425, 537
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	4 cut(s)	570, 1007, 1260, 1278
Tru1I	TTAA	7 cut(s)	26, 378, 582, 617, 927, 1094, 1288
Tru9I	TTAA	7 cut(s)	26, 378, 582, 617, 927, 1094, 1288
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	5 cut(s)	4, 307, 816, 845, 1216
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	8 cut(s)	327, 396, 591, 763, 998, 1020, 1089, 1235
Van91I	CCANNNNNTGG	1 cut(s)	215
VspI	ATTAAT	2 cut(s)	378, 582
XapI	RAATTY	5 cut(s)	612, 643, 770, 1090, 1096
XceI	RCATGY	2 cut(s)	271, 1084
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	6 cut(s)	230, 423, 905, 999, 1043, 1220
Zsp2I	ATGCAT	2 cut(s)	436, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.