Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008663

Physical Location & Seq

Genomic Coordinates Forward (+)

21545919 .. 21550262

Gene Structure 4344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18240.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGACTATGACCCGATCCATGTGATGCAAACCGGTGATGATAAATCCTTGAGTTTTGAGACAGTGCTCTTCTCTGAGCTGCTGAAAAATATGCAGCATCTTCTTCCGGCCCGCCTCATAAAGTCTCTGTCTGCTACTTCTTTACCATGCACCACCTCCACCCTTCACGAACTTGCTTCTACTCACCCCAAAGGTGTTGCGAGGGTTGTACTGAAAAAGGGGAAGACCCAATTATTCAAGGATGGCAGCCCAATGGTCTACAGTGGAGCAGTTGATAGAATAATTGGTAGACCACCTCCCAGGACTGGAGACATTGTGCTGGTAGCTGATGGGGCAGAAAAACCAATAGGATGGGGCATGTACAATTCAGTCTCCATGTTCAGTGTTCGGCTGATGCAACTCGAAGAGGAAGCAACAAGGGATTTGTCATGTGCATTGAACATGGAGAAACTGCTTGAGACAAGAATTAATGAAGCTATAGAACTACGTAAGAGTTTGGGACTGCCATCAGTTAGTACAAATGCATTCCGTCTTGTCAATAGTGAAGCAGACAGATTGTCAGGATTAATAGTTGATATATTTGGAGATGTAGCGGTAGTAGCATCGTCTGCTGCTTGGGTTGAGAAGTACAAAGCAGAAGTAGAGGCCTGTATTAGTAGAATTGACGAAGTTAATTATGTAAACTGGAGACCATCTTTGGAAGTTTTAAAAGAAGAAGGATTGGATGTGTCAAATTACAAGGAAAGGGATCCATCTACCTGTCCTCAAAGAACAAAGGTTATGGAAAACGGGATCTTTTATTCCATTTCACTTGAGGGACAGAAGACAGGGTTTTATGCGGATCAGCGTGAAAACCGCCAATTCATATCAACAATTTCAGAAGGCCAGAAAGTTCTTGATATGTTCTGCTACAGTGGTGGTTTTGCTCTAAATGCTGCACGAGGGGGTGCTGCAAATGTCATCGGTGTCGATTCATCATTGCCTGCGATTGAGCTAGCCAAAGAAAATGTTGTTCTTAACAACATGGATCCACAGAGAATAACATTTTTGAAAGAAGATGCAAGTGAGTTTATGAAGGGTGCTCTTTCTAGGAACGAATCATGGGATATTGTCATTTTCGATCCTCCTAAACTAGCACCCCGAAAGAAGGTTTTACAAAATGCATCAGGCATGTATAGAAATTTAAATTCATTGGCAATGCAACTGACAAAGAGAGGTGGTCTTCTCATGACTTGTTCATGTTCGGGGGCTATGACGCAAAGTGGGATGTTCTTGCGTATTCTTCAGGGTGCAGCATCAGCGGCAGGGAGAAAAATAACCGTTCTACGGGACGCTGGAGCGGCATGTGATCATCCCATTGACCCATCCTACCCAGAAGGCAAATACCTTTCTAACGTCCTTCTGAGGGTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_SAM

Protein Analysis

472

Amino Acids

51.71

Weight (kDa)

6.57

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54310
fragaria_vesca	FvH4_3g14100 FvH4_3g14100
malus_domestica	MD10G1216400.v1.1
prunus_persica	Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1 Prupe.4G128300_v2.0.a1
pyrus_communis	pycom10g18240
rosa_chinensis	RchiOBHm_Chr5g0023411
rosa_laevigata	RLG00000032720
rosa_multiflora	Rmu_sc0004629.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055640 Rroxscaffold_1G00055930
rosa_rugosa	Rorug05G0079000
rosa_samantha	Rh5AG165900 Rh5BG165100 Rh5CG180000 Rh5DG166600
rosa_wichuraiana	Rw5G014930 Rw5G015090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1340
AccI	GTMKAC	2 cut(s)	258, 289
AciI	CCGC	6 cut(s)	112, 593, 839, 856, 1301, 1340
AclWI	GGATC	8 cut(s)	10, 743, 756, 800, 849, 1022, 1035, 1115
AcsI	RAATTY	2 cut(s)	1180, 1186
AcuI	CTGAAG	1 cut(s)	1268
AfaI	GTAC	4 cut(s)	210, 362, 517, 629
AfiI	CCNNNNNNNGG	4 cut(s)	305, 1147, 1326, 1405
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	238, 439, 1051
AhdI	GACNNNNNGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	4 cut(s)	79, 326, 476, 994
AluI	AGCT	4 cut(s)	79, 326, 476, 994
Alw21I	GWGCWC	2 cut(s)	69, 1084
Alw26I	GTCTC	6 cut(s)	53, 129, 303, 376, 452, 682
AlwI	GGATC	8 cut(s)	10, 743, 756, 800, 849, 1022, 1035, 1115
AoxI	GGCC	3 cut(s)	108, 645, 883
ApeKI	GCWGC	7 cut(s)	79, 94, 246, 611, 935, 950, 1292
ApoI	RAATTY	2 cut(s)	1180, 1186
AseI	ATTAAT	2 cut(s)	468, 566
AsiGI	ACCGGT	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	109, 1408
AsuHPI	GGTGA	2 cut(s)	47, 176
AsuNHI	GCTAGC	1 cut(s)	994
AvaII	GGWCC	1 cut(s)	1408
BamHI	GGATCC	2 cut(s)	748, 1027
BauI	CACGAG	1 cut(s)	939
BbsI	GAAGAC	3 cut(s)	230, 830, 1214
Bbv12I	GWGCWC	2 cut(s)	69, 1084
BbvI	GCAGC	7 cut(s)	66, 106, 258, 598, 922, 937, 1304
BccI	CCATC	7 cut(s)	236, 323, 345, 514, 700, 760, 1372
BciT130I	CCWGG	1 cut(s)	301
BclI	TGATCA	1 cut(s)	1348
BcoDI	GTCTC	6 cut(s)	53, 129, 303, 376, 452, 682
BfaI	CTAG	3 cut(s)	995, 1089, 1133
BfmI	CTRYAG	3 cut(s)	259, 477, 910
BisI	GCNGC	9 cut(s)	80, 95, 247, 612, 936, 951, 1293, 1302, 1341
BlsI	GCNGC	9 cut(s)	81, 96, 248, 613, 937, 952, 1294, 1303, 1342
Bme1390I	CCNGG	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	1408
BmeRI	GACNNNNNGTC	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	109, 1408
BmiI	GGNNCC	3 cut(s)	750, 1029, 1409
BmrFI	CCNGG	1 cut(s)	301
BmsI	GCATC	7 cut(s)	15, 106, 384, 611, 1048, 1172, 1304
BmtI	GCTAGC	1 cut(s)	998
BpiI	GAAGAC	3 cut(s)	230, 830, 1214
BpmI	CTGGAG	3 cut(s)	327, 706, 1356
BpuEI	CTTGAG	3 cut(s)	70, 476, 833
BsaAI	YACGTR	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	4 cut(s)	305, 1147, 1326, 1405
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	310, 689
Bse3DI	GCAATG	2 cut(s)	977, 1203
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	6 cut(s)	247, 356, 730, 1272, 1351, 1364
BseLI	CCNNNNNNNGG	4 cut(s)	305, 1147, 1326, 1405
BseMI	GCAATG	2 cut(s)	977, 1203
BseMII	CTCAG	2 cut(s)	66, 1394
BseNI	ACTGG	2 cut(s)	310, 689
BseXI	GCAGC	7 cut(s)	66, 106, 258, 598, 922, 937, 1304
BsgI	GTGCAG	2 cut(s)	921, 1311
BshFI	GGCC	3 cut(s)	110, 647, 885
BshTI	ACCGGT	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	69, 1084
BsiSI	CCGG	2 cut(s)	33, 107
BslFI	GGGAC	3 cut(s)	513, 831, 1343
BslI	CCNNNNNNNGG	4 cut(s)	305, 1147, 1326, 1405
BsmAI	GTCTC	6 cut(s)	53, 129, 303, 376, 452, 682
BsmFI	GGGAC	3 cut(s)	513, 831, 1343
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	3 cut(s)	110, 647, 885
Bso31I	GGTCTC	1 cut(s)	682
Bsp1286I	GDGCHC	2 cut(s)	69, 1084
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	7 cut(s)	15, 748, 792, 841, 1027, 1120, 1348
BspACI	CCGC	6 cut(s)	112, 593, 839, 856, 1301, 1340
BspANI	GGCC	3 cut(s)	110, 647, 885
BspCNI	CTCAG	2 cut(s)	67, 1395
BspHI	TCATGA	1 cut(s)	1227
BspLI	GGNNCC	3 cut(s)	750, 1029, 1409
BspOI	GCTAGC	1 cut(s)	998
BspPI	GGATC	8 cut(s)	10, 743, 756, 800, 849, 1022, 1035, 1115
BspQI	GCTCTTC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	682
BsrBI	CCGCTC	1 cut(s)	1340
BsrDI	GCAATG	2 cut(s)	977, 1203
BsrFI	RCCGGY	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	310, 689
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	7 cut(s)	15, 748, 792, 841, 1027, 1120, 1348
BssSI	CACGAG	1 cut(s)	939
Bst2BI	CACGAG	1 cut(s)	939
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	4 cut(s)	64, 263, 914, 1321
Bst6I	CTCTTC	2 cut(s)	74, 399
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	3 cut(s)	112, 984, 996
BstDEI	CTNAG	2 cut(s)	75, 1403
BstF5I	GGATG	6 cut(s)	247, 356, 730, 1272, 1351, 1364
BstKTI	GATC	7 cut(s)	18, 751, 795, 844, 1030, 1123, 1351
BstMAI	GTCTC	6 cut(s)	53, 129, 303, 376, 452, 682
BstMBI	GATC	7 cut(s)	15, 748, 792, 841, 1027, 1120, 1348
BstMWI	GCNNNNNNNGC	7 cut(s)	332, 599, 608, 932, 1298, 1301, 1340
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	3 cut(s)	361, 1174, 1347
BstSCI	CCNGG	1 cut(s)	299
BstSFI	CTRYAG	3 cut(s)	259, 477, 910
BstSNI	TACGTA	1 cut(s)	488
BstV1I	GCAGC	7 cut(s)	66, 106, 258, 598, 922, 937, 1304
BstV2I	GAAGAC	3 cut(s)	230, 830, 1214
BstX2I	RGATCY	3 cut(s)	748, 792, 1027
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	3 cut(s)	748, 792, 1027
BsuRI	GGCC	3 cut(s)	110, 647, 885
BtsCI	GGATG	6 cut(s)	247, 356, 730, 1272, 1351, 1364
BtsIMutI	CAGTG	4 cut(s)	69, 268, 388, 919
Cac8I	GCNNGC	3 cut(s)	112, 984, 996
CciI	TCATGA	1 cut(s)	1227
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	109, 1408
CseI	GACGC	2 cut(s)	1264, 1340
Csp6I	GTAC	4 cut(s)	209, 361, 516, 628
CspAI	ACCGGT	1 cut(s)	32
CviQI	GTAC	4 cut(s)	209, 361, 516, 628
DdeI	CTNAG	2 cut(s)	75, 1403
DpnI	GATC	7 cut(s)	17, 750, 794, 843, 1029, 1122, 1350
DpnII	GATC	7 cut(s)	15, 748, 792, 841, 1027, 1120, 1348
DraI	TTTAAA	2 cut(s)	708, 1185
DriI	GACNNNNNGTC	1 cut(s)	556
Eam1104I	CTCTTC	2 cut(s)	74, 399
Eam1105I	GACNNNNNGTC	1 cut(s)	556
EarI	CTCTTC	2 cut(s)	74, 399
Eco105I	TACGTA	1 cut(s)	488
Eco147I	AGGCCT	1 cut(s)	647
Eco31I	GGTCTC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	1408
Eco57I	CTGAAG	1 cut(s)	1268
EcoO109I	RGGNCCY	1 cut(s)	1408
EcoRII	CCWGG	1 cut(s)	299
EcoT22I	ATGCAT	2 cut(s)	526, 1165
FaqI	GGGAC	3 cut(s)	513, 831, 1343
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	1348
FblI	GTMKAC	2 cut(s)	258, 289
Fnu4HI	GCNGC	9 cut(s)	80, 95, 247, 612, 936, 951, 1293, 1302, 1341
FokI	GGATG	6 cut(s)	254, 363, 737, 1279, 1338, 1351
Fsp4HI	GCNGC	9 cut(s)	80, 95, 247, 612, 936, 951, 1293, 1302, 1341
FspBI	CTAG	3 cut(s)	995, 1089, 1133
GluI	GCNGC	9 cut(s)	80, 95, 247, 612, 936, 951, 1293, 1302, 1341
GsuI	CTGGAG	3 cut(s)	327, 706, 1356
HaeIII	GGCC	3 cut(s)	110, 647, 885
HapII	CCGG	2 cut(s)	33, 107
HgaI	GACGC	2 cut(s)	1264, 1340
HinfI	GANTC	2 cut(s)	971, 1097
HpaII	CCGG	2 cut(s)	33, 107
HphI	GGTGA	2 cut(s)	47, 176
Hpy166II	GTNNAC	3 cut(s)	259, 290, 682
Hpy188I	TCNGA	3 cut(s)	76, 880, 1404
Hpy188III	TCNNGA	4 cut(s)	167, 561, 896, 1228
Hpy8I	GTNNAC	3 cut(s)	259, 290, 682
HpyAV	CCTTC	7 cut(s)	173, 710, 875, 1069, 1141, 1370, 1409
HpyCH4III	ACNGT	4 cut(s)	64, 263, 914, 1321
HpyCH4IV	ACGT	2 cut(s)	487, 1395
HpyF10VI	GCNNNNNNNGC	7 cut(s)	332, 599, 608, 932, 1298, 1301, 1340
HpyF3I	CTNAG	2 cut(s)	75, 1403
HpySE526I	ACGT	2 cut(s)	487, 1395
Ksp22I	TGATCA	1 cut(s)	1348
Kzo9I	GATC	7 cut(s)	15, 748, 792, 841, 1027, 1120, 1348
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	2 cut(s)	266, 1337
Lsp1109I	GCAGC	7 cut(s)	66, 106, 258, 598, 922, 937, 1304
LweI	GCATC	7 cut(s)	15, 106, 384, 611, 1048, 1172, 1304
MaeI	CTAG	3 cut(s)	995, 1089, 1133
MaeII	ACGT	2 cut(s)	487, 1395
MalI	GATC	7 cut(s)	17, 750, 794, 843, 1029, 1122, 1350
MbiI	CCGCTC	1 cut(s)	1340
MboI	GATC	7 cut(s)	15, 748, 792, 841, 1027, 1120, 1348
MflI	RGATCY	3 cut(s)	748, 792, 1027
MhlI	GDGCHC	2 cut(s)	69, 1084
Mph1103I	ATGCAT	2 cut(s)	526, 1165
MseI	TTAA	6 cut(s)	468, 566, 672, 707, 1017, 1184
MspA1I	CMGCKG	1 cut(s)	1301
MspI	CCGG	2 cut(s)	33, 107
MspR9I	CCNGG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	7 cut(s)	332, 599, 608, 932, 1298, 1301, 1340
NdeII	GATC	7 cut(s)	15, 748, 792, 841, 1027, 1120, 1348
NheI	GCTAGC	1 cut(s)	994
NlaIV	GGNNCC	3 cut(s)	750, 1029, 1409
NsiI	ATGCAT	2 cut(s)	526, 1165
NspI	RCATGY	3 cut(s)	361, 1174, 1347
PagI	TCATGA	1 cut(s)	1227
PceI	AGGCCT	1 cut(s)	647
PciSI	GCTCTTC	1 cut(s)	74
PctI	GAATGC	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	971, 1097
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	9 cut(s)	81, 96, 248, 613, 937, 952, 1294, 1303, 1342
Ppu21I	YACGTR	1 cut(s)	488
PpuMI	RGGWCCY	1 cut(s)	1408
PshBI	ATTAAT	2 cut(s)	468, 566
Psp5II	RGGWCCY	1 cut(s)	1408
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	750, 1029, 1409
PspPI	GGNCC	2 cut(s)	109, 1408
PspPPI	RGGWCCY	1 cut(s)	1408
PsuI	RGATCY	3 cut(s)	748, 792, 1027
RsaI	GTAC	4 cut(s)	210, 362, 517, 629
RsaNI	GTAC	4 cut(s)	209, 361, 516, 628
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	6 cut(s)	468, 566, 672, 707, 1017, 1184
SatI	GCNGC	9 cut(s)	80, 95, 247, 612, 936, 951, 1293, 1302, 1341
Sau3AI	GATC	7 cut(s)	15, 748, 792, 841, 1027, 1120, 1348
Sau96I	GGNCC	2 cut(s)	109, 1408
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	2 cut(s)	69, 1084
SfaNI	GCATC	7 cut(s)	15, 106, 384, 611, 1048, 1172, 1304
SfcI	CTRYAG	3 cut(s)	259, 477, 910
SinI	GGWCC	1 cut(s)	1408
SmiI	ATTTAAAT	1 cut(s)	1185
SmlI	CTYRAG	3 cut(s)	49, 455, 812
SmoI	CTYRAG	3 cut(s)	49, 455, 812
SnaBI	TACGTA	1 cut(s)	488
SseBI	AGGCCT	1 cut(s)	647
SsiI	CCGC	6 cut(s)	112, 593, 839, 856, 1301, 1340
SspMI	CTAG	3 cut(s)	995, 1089, 1133
StuI	AGGCCT	1 cut(s)	647
StyD4I	CCNGG	1 cut(s)	299
SwaI	ATTTAAAT	1 cut(s)	1185
TaaI	ACNGT	4 cut(s)	64, 263, 914, 1321
TaiI	ACGT	2 cut(s)	490, 1398
TaqI	TCGA	3 cut(s)	402, 969, 1119
TatI	WGTACW	4 cut(s)	208, 360, 515, 627
TauI	GCSGC	2 cut(s)	1304, 1343
TfiI	GAWTC	2 cut(s)	971, 1097
Tru1I	TTAA	6 cut(s)	468, 566, 672, 707, 1017, 1184
Tru9I	TTAA	6 cut(s)	468, 566, 672, 707, 1017, 1184
TscAI	CASTG	4 cut(s)	69, 268, 388, 919
TseI	GCWGC	7 cut(s)	79, 94, 246, 611, 935, 950, 1292
TspDTI	ATGAA	6 cut(s)	486, 853, 963, 1088, 1179, 1227
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	4 cut(s)	69, 268, 388, 919
VpaK11BI	GGWCC	1 cut(s)	1408
VspI	ATTAAT	2 cut(s)	468, 566
XapI	RAATTY	2 cut(s)	1180, 1186
XceI	RCATGY	3 cut(s)	361, 1174, 1347
XmiI	GTMKAC	2 cut(s)	258, 289
XspI	CTAG	3 cut(s)	995, 1089, 1133
Zsp2I	ATGCAT	2 cut(s)	526, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.