Prupe.4G189200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016788
Physical Location & Seq
Reverse (-)
11247548 .. 11249911
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G189200.1

Sequence Viewer

Length: 444 bp
ATGGCTGAAATTAGAATTGAGAGAGCCTCTGATAAGCTGAAAGAGCACAAATCAAACCCCAACCGCCGAGAAAACATTGGCGGGCTTCTGGGTCACATCGCCAAATTTGCTATTGACTCCACCATCAACTTCTCTCTCAAAGCCCTCCCCGGTAGGAAGCGGGGGTATCAGATTGTGCAGGAGGGATTAAAGGATCAACCCCTTTCAGTTTCTCCTGATGACACCAAGAAACCAGAAGATCTTAAGTTGGCAATGGAGGACATGAATGCAAAAATGGAGAATATGCAGGAAGACACGAACATTGTAAAGCAACAACATAACATATCAGCAGAACATGTCATGGGATCAGCGGATCCAAAGAAGATGCCAGACGGAAGAGGCATTCAGGGGGCGGATCTTCTGCAGAACAATAAGAAGAGGATCTTCATTCGATCGCGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.59

Weight (kDa)

9.48

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016788)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20870
malus_domestica MD03G1219700.v1.1
prunus_persica Prupe.4G189200_v2.0.a1
pyrus_communis pycom03g16910
rosa_laevigata RLG00000033612
rosa_multiflora Rmu_sc0007948.1_g000002 Rmu_sc0008116.1_g000008
rosa_roxburghii Rroxscaffold_1G00045130
rosa_rugosa Rorug05G0150900
rosa_samantha Rh5BG243300 Rh5CG275000 Rh5DG252400 Rh5DG252500
rosa_wichuraiana Rw5G022270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 436
AciI CCGC 5 cut(s) 64, 81, 160, 350, 392
AclWI GGATC 6 cut(s) 201, 347, 352, 360, 402, 428
AcsI RAATTY 1 cut(s) 104
AflII CTTAAG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 334
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 48
AlwI GGATC 6 cut(s) 201, 347, 352, 360, 402, 428
ApoI RAATTY 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 150
BamHI GGATCC 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 48
BccI CCATC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 401
BfrI CTTAAG 1 cut(s) 242
BglII AGATCT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 436
Bsh1285I CGRYCG 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 150
BsmI GAATGC 2 cut(s) 271, 381
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 7 cut(s) 193, 238, 344, 352, 394, 420, 431
BspACI CCGC 5 cut(s) 64, 81, 160, 350, 392
BspFNI CGCG 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 354
BspMAI CTGCAG 1 cut(s) 405
BspPI GGATC 6 cut(s) 201, 347, 352, 360, 402, 428
BspTI CTTAAG 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 7 cut(s) 193, 238, 344, 352, 394, 420, 431
Bst6I CTCTTC 2 cut(s) 370, 410
BstAFI CTTAAG 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 83
BstFNI CGCG 1 cut(s) 436
BstKTI GATC 7 cut(s) 196, 241, 347, 355, 397, 423, 434
BstMBI GATC 7 cut(s) 193, 238, 344, 352, 394, 420, 431
BstMCI CGRYCG 1 cut(s) 434
BstMWI GCNNNNNNNGC 2 cut(s) 43, 107
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 401
BstUI CGCG 1 cut(s) 436
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 4 cut(s) 238, 352, 394, 420
BstYI RGATCY 4 cut(s) 238, 352, 394, 420
BtgZI GCGATG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 83
CseI GACGC 1 cut(s) 425
CviAII CATG 3 cut(s) 262, 335, 340
CviJI RGCY 5 cut(s) 5, 26, 37, 85, 143
CviKI_1 RGCY 5 cut(s) 5, 26, 37, 85, 143
DpnI GATC 7 cut(s) 195, 240, 346, 354, 396, 422, 433
DpnII GATC 7 cut(s) 193, 238, 344, 352, 394, 420, 431
Eam1104I CTCTTC 2 cut(s) 370, 410
EarI CTCTTC 2 cut(s) 370, 410
EciI GGCGGA 1 cut(s) 407
FaeI CATG 3 cut(s) 265, 338, 343
FaiI YATR 7 cut(s) 263, 284, 318, 323, 336, 341, 442
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FatI CATG 3 cut(s) 261, 334, 339
FauI CCCGC 2 cut(s) 74, 153
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 425
Hin1II CATG 3 cut(s) 265, 338, 343
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 31, 171
Hpy188III TCNNGA 1 cut(s) 215
HpyCH4V TGCA 4 cut(s) 178, 269, 286, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 107
Hsp92II CATG 3 cut(s) 265, 338, 343
Kzo9I GATC 7 cut(s) 193, 238, 344, 352, 394, 420, 431
LpnPI CCDG 8 cut(s) 74, 163, 164, 228, 246, 272, 371, 381
LweI GCATC 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 92
MalI GATC 7 cut(s) 195, 240, 346, 354, 396, 422, 433
MboI GATC 7 cut(s) 193, 238, 344, 352, 394, 420, 431
MboII GAAGA 7 cut(s) 248, 302, 373, 387, 389, 415, 427
MflI RGATCY 4 cut(s) 238, 352, 394, 420
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 3 cut(s) 9, 15, 104
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 6 cut(s) 37, 155, 175, 250, 371, 411
MseI TTAA 2 cut(s) 188, 243
MspA1I CMGCKG 1 cut(s) 350
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 150
Mva1269I GAATGC 2 cut(s) 271, 381
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 2 cut(s) 43, 107
NciI CCSGG 1 cut(s) 150
NdeII GATC 7 cut(s) 193, 238, 344, 352, 394, 420, 431
NlaIII CATG 3 cut(s) 265, 338, 343
NlaIV GGNNCC 1 cut(s) 354
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PctI GAATGC 2 cut(s) 271, 381
Ple19I CGATCG 1 cut(s) 434
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PscI ACATGT 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 354
PstI CTGCAG 1 cut(s) 405
PsuI RGATCY 4 cut(s) 238, 352, 394, 420
PvuI CGATCG 1 cut(s) 434
SaqAI TTAA 2 cut(s) 188, 243
Sau3AI GATC 7 cut(s) 193, 238, 344, 352, 394, 420, 431
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 48
SetI ASST 1 cut(s) 39
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 3 cut(s) 9, 15, 104
SsiI CCGC 5 cut(s) 64, 81, 160, 350, 392
StyD4I CCNGG 1 cut(s) 148
TaqI TCGA 1 cut(s) 430
TasI AATT 3 cut(s) 9, 15, 104
Tru1I TTAA 2 cut(s) 188, 243
Tru9I TTAA 2 cut(s) 188, 243
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 278, 415
TspGWI ACGGA 1 cut(s) 387
Vha464I CTTAAG 1 cut(s) 242
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.