pycom03g16910

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
18094440 .. 18095434
995 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g16910.1

Sequence Viewer

Length: 333 bp
ATGGAGGAAATGCACGCGAAAATGGAGCAGATGCAGGAAGACACGAATATTGTAAAGCAGCAACATAAGACATCAGCAGAGCATGTTGAAGGATTAGGGAATCCAAAGAAGATGCCGGATGAAGGCGTTCAGGGTTCGGATCTTCTGCAGAACAAGAAGAAAAAGATCTTCATTCGTTCATCACAGCACCGAACAATGGCAGCATGGACAGTAGCGTCTCGCAGAGCAGCGAATATGGTGCGGCTTTCCTCTCCCAAGTCGGCTTCCACCGCTCAACCCACTTCCCCTGTCCATCGGCGAGGTTTTGCCACCGGCGGCGTGTACTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.29

Weight (kDa)

10.07

Isoelectric Point (pI)

72.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016788)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20870
malus_domestica MD03G1219700.v1.1
prunus_persica Prupe.4G189200_v2.0.a1
pyrus_communis pycom03g16910
rosa_laevigata RLG00000033612
rosa_multiflora Rmu_sc0007948.1_g000002 Rmu_sc0008116.1_g000008
rosa_roxburghii Rroxscaffold_1G00045130
rosa_rugosa Rorug05G0150900
rosa_samantha Rh5BG243300 Rh5CG275000 Rh5DG252400 Rh5DG252500
rosa_wichuraiana Rw5G022270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 241, 270, 315
AclWI GGATC 1 cut(s) 147
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 122, 196
AgsI TTSAA 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 147
ApeKI GCWGC 3 cut(s) 58, 200, 227
Asp700I GAANNNNTTC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 70, 212, 239
BccI CCATC 1 cut(s) 300
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BcoDI GTCTC 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 146
BglII AGATCT 1 cut(s) 165
BisI GCNGC 5 cut(s) 59, 201, 228, 242, 316
BlsI GCNGC 5 cut(s) 60, 202, 229, 243, 317
BmsI GCATC 2 cut(s) 21, 102
BpiI GAAGAC 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 196
Bse118I RCCGGY 1 cut(s) 311
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 122, 196
BseXI GCAGC 3 cut(s) 70, 212, 239
Bsh1236I CGCG 1 cut(s) 17
BsiSI CCGG 2 cut(s) 116, 312
BslI CCNNNNNNNGG 2 cut(s) 122, 196
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 139, 165
BspACI CCGC 3 cut(s) 241, 270, 315
BspFNI CGCG 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 150
BspPI GGATC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 311
BssMI GATC 2 cut(s) 139, 165
Bst4CI ACNGT 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 15
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 2 cut(s) 142, 168
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 139, 165
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 146
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 70, 212, 239
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 139, 165
BstYI RGATCY 2 cut(s) 139, 165
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 311
CseI GACGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 83, 204
CviJI RGCY 2 cut(s) 244, 263
CviKI_1 RGCY 2 cut(s) 244, 263
CviQI GTAC 1 cut(s) 322
DpnI GATC 2 cut(s) 141, 167
DpnII GATC 2 cut(s) 139, 165
DrdI GACNNNNNNGTC 1 cut(s) 214
DseDI GACNNNNNNGTC 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 2 cut(s) 86, 207
FaiI YATR 4 cut(s) 66, 84, 205, 236
FatI CATG 2 cut(s) 82, 203
Fnu4HI GCNGC 5 cut(s) 59, 201, 228, 242, 316
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 5 cut(s) 59, 201, 228, 242, 316
GluI GCNGC 5 cut(s) 59, 201, 228, 242, 316
HapII CCGG 2 cut(s) 116, 312
HgaI GACGC 1 cut(s) 204
Hin1II CATG 2 cut(s) 86, 207
HinfI GANTC 1 cut(s) 100
HpaII CCGG 2 cut(s) 116, 312
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 83, 116
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 3 cut(s) 13, 34, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
Hsp92II CATG 2 cut(s) 86, 207
Kzo9I GATC 2 cut(s) 139, 165
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 5 cut(s) 20, 116, 129, 300, 325
Lsp1109I GCAGC 3 cut(s) 70, 212, 239
LweI GCATC 2 cut(s) 21, 102
MalI GATC 2 cut(s) 141, 167
MbiI CCGCTC 1 cut(s) 272
MboI GATC 2 cut(s) 139, 165
MboII GAAGA 5 cut(s) 50, 121, 134, 160, 169
MflI RGATCY 2 cut(s) 139, 165
MnlI CCTC 2 cut(s) 259, 293
MroXI GAANNNNTTC 1 cut(s) 126
MspI CCGG 2 cut(s) 116, 312
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 2 cut(s) 139, 165
NlaIII CATG 2 cut(s) 86, 207
NspI RCATGY 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 5 cut(s) 60, 202, 229, 243, 317
PstI CTGCAG 1 cut(s) 150
PsuI RGATCY 2 cut(s) 139, 165
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SatI GCNGC 5 cut(s) 59, 201, 228, 242, 316
Sau3AI GATC 2 cut(s) 139, 165
SetI ASST 1 cut(s) 304
SfaNI GCATC 2 cut(s) 21, 102
SfcI CTRYAG 1 cut(s) 146
SgrAI CRCCGGYG 1 cut(s) 311
SsiI CCGC 3 cut(s) 241, 270, 315
SspI AATATT 1 cut(s) 49
TaaI ACNGT 1 cut(s) 211
TatI WGTACW 1 cut(s) 321
TauI GCSGC 2 cut(s) 244, 318
TfiI GAWTC 1 cut(s) 100
TseI GCWGC 3 cut(s) 58, 200, 227
TspDTI ATGAA 3 cut(s) 135, 160, 168
XceI RCATGY 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.