Rmu_sc0007948.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007948.1
Physical Location & Seq
Reverse (-)
1126 .. 2923
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007948.1_g000002.1.cds

Sequence Viewer

Length: 444 bp
atgggtgacattagaattgagacgacggagaagctgaaacagcagaaacccaacaccgacagccgagaaaacaccggcgggcttctgacccacatagccaaattcgctattgactccaccatcaactactctctcaaactcaaagccctcgccggtaggaagcaagtgtatgaaaatgtgcaggaacgattaaaggatcaaaccctttcaacttgtctggatgacaagaagaaaccacaagattttaagttagggatggaggagatgcaagcaaaaatggagaagatgcaggaagacatgaatatcgtaaagcaacaacatcagatatcagccaaacatgtagagagatcagatcacccaaaaaagatgccagacagaagcattcatggagcagatcttcctgagaacaatcggaaaaagatcttcatccgttcccgtctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

17.07

Weight (kDa)

9.49

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016788)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20870
malus_domestica MD03G1219700.v1.1
prunus_persica Prupe.4G189200_v2.0.a1
pyrus_communis pycom03g16910
rosa_laevigata RLG00000033612
rosa_multiflora Rmu_sc0007948.1_g000002 Rmu_sc0008116.1_g000008
rosa_roxburghii Rroxscaffold_1G00045130
rosa_rugosa Rorug05G0150900
rosa_samantha Rh5BG243300 Rh5CG275000 Rh5DG252400 Rh5DG252500
rosa_wichuraiana Rw5G022270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 17, 347
BbsI GAAGAC 1 cut(s) 300
BccI CCATC 2 cut(s) 128, 250
BcoDI GTCTC 1 cut(s) 14
BglII AGATCT 2 cut(s) 394, 420
BmsI GCATC 3 cut(s) 255, 276, 357
BpiI GAAGAC 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 425
Bse118I RCCGGY 2 cut(s) 74, 152
Bse8I GATNNNNATC 1 cut(s) 425
BseGI GGATG 3 cut(s) 226, 261, 426
BseJI GATNNNNATC 1 cut(s) 425
BseMII CTCAG 1 cut(s) 393
BseRI GAGGAG 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 200
BsiSI CCGG 2 cut(s) 75, 153
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 381
Bsp143I GATC 5 cut(s) 196, 347, 352, 394, 420
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 394
BspPI GGATC 1 cut(s) 204
BsrFI RCCGGY 2 cut(s) 74, 152
BssAI RCCGGY 2 cut(s) 74, 152
BssMI GATC 5 cut(s) 196, 347, 352, 394, 420
BstC8I GCNNGC 2 cut(s) 80, 270
BstDEI CTNAG 1 cut(s) 402
BstF5I GGATG 3 cut(s) 226, 261, 426
BstKTI GATC 5 cut(s) 199, 350, 355, 397, 423
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 5 cut(s) 196, 347, 352, 394, 420
BstMWI GCNNNNNNNGC 2 cut(s) 40, 104
BstNSI RCATGY 1 cut(s) 341
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 2 cut(s) 394, 420
BstYI RGATCY 2 cut(s) 394, 420
BtsCI GGATG 3 cut(s) 226, 261, 426
Cac8I GCNNGC 2 cut(s) 80, 270
Cfr10I RCCGGY 2 cut(s) 74, 152
CviAII CATG 3 cut(s) 298, 338, 386
CviJI RGCY 6 cut(s) 34, 63, 82, 98, 146, 332
CviKI_1 RGCY 6 cut(s) 34, 63, 82, 98, 146, 332
DdeI CTNAG 1 cut(s) 402
DpnI GATC 5 cut(s) 198, 349, 354, 396, 422
DpnII GATC 5 cut(s) 196, 347, 352, 394, 420
Eco32I GATATC 1 cut(s) 327
EcoRV GATATC 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 3 cut(s) 301, 341, 389
FaiI YATR 5 cut(s) 95, 171, 299, 339, 387
FatI CATG 3 cut(s) 297, 337, 385
FauI CCCGC 1 cut(s) 71
FokI GGATG 3 cut(s) 233, 268, 413
HapII CCGG 2 cut(s) 75, 153
Hin1II CATG 3 cut(s) 301, 341, 389
HinfI GANTC 1 cut(s) 113
HpaII CCGG 2 cut(s) 75, 153
HphI GGTGA 2 cut(s) 17, 347
Hpy188I TCNGA 4 cut(s) 87, 324, 352, 414
Hpy188III TCNNGA 2 cut(s) 218, 401
Hpy99I CGWCG 1 cut(s) 28
HpyCH4V TGCA 3 cut(s) 181, 268, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 104
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 3 cut(s) 301, 341, 389
Kzo9I GATC 5 cut(s) 196, 347, 352, 394, 420
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 7 cut(s) 88, 166, 167, 203, 275, 384, 414
LweI GCATC 3 cut(s) 255, 276, 357
MaeIII GTNAC 1 cut(s) 5
MalI GATC 5 cut(s) 198, 349, 354, 396, 422
MboI GATC 5 cut(s) 196, 347, 352, 394, 420
MboII GAAGA 5 cut(s) 241, 295, 305, 389, 415
MflI RGATCY 2 cut(s) 394, 420
MluCI AATT 2 cut(s) 15, 101
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 2 cut(s) 158, 253
MseI TTAA 2 cut(s) 191, 246
MspI CCGG 2 cut(s) 75, 153
Mva1269I GAATGC 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 40, 104
NdeII GATC 5 cut(s) 196, 347, 352, 394, 420
NlaIII CATG 3 cut(s) 301, 341, 389
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 341
PciI ACATGT 1 cut(s) 337
PctI GAATGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PscI ACATGT 1 cut(s) 337
PsuI RGATCY 2 cut(s) 394, 420
SaqAI TTAA 2 cut(s) 191, 246
Sau3AI GATC 5 cut(s) 196, 347, 352, 394, 420
SchI GAGTC 1 cut(s) 107
SetI ASST 1 cut(s) 36
SfaNI GCATC 3 cut(s) 255, 276, 357
SgrAI CRCCGGYG 1 cut(s) 74
Sse9I AATT 2 cut(s) 15, 101
SsiI CCGC 1 cut(s) 78
TasI AATT 2 cut(s) 15, 101
Tru1I TTAA 2 cut(s) 191, 246
Tru9I TTAA 2 cut(s) 191, 246
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 186, 314, 374, 415
TspGWI ACGGA 2 cut(s) 41, 419
XapI RAATTY 1 cut(s) 101
XceI RCATGY 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.