Rh5BG243300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
29405334 .. 29406999
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG243300.1

Sequence Viewer

Length: 249 bp
ATGGGTGACATTAGAATTGAGACGACGGAGAAGCTGAAACAGCAGAAACCCAACACCGGCGGGCTTCTGACCCACATAGCCAAATTCGCTATTGACTCCACCATCAACTACTCTCTCAAACTCAAAGCCCTCGCCGGTAGGAAGCAAGTGTATGAAAATGTGCAGGAACGATTAAAGGATCAAACCCTTTCAACTTGTCTGGATGACAAGAAGAAACCACAAGATTTTAAATATCAGCCAAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.43

Weight (kDa)

9.44

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016788)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20870
malus_domestica MD03G1219700.v1.1
prunus_persica Prupe.4G189200_v2.0.a1
pyrus_communis pycom03g16910
rosa_laevigata RLG00000033612
rosa_multiflora Rmu_sc0007948.1_g000002 Rmu_sc0008116.1_g000008
rosa_roxburghii Rroxscaffold_1G00045130
rosa_rugosa Rorug05G0150900
rosa_samantha Rh5BG243300 Rh5CG275000 Rh5DG252400 Rh5DG252500
rosa_wichuraiana Rw5G022270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 192
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 186
ApoI RAATTY 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 17
BccI CCATC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse118I RCCGGY 2 cut(s) 56, 134
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 182
BsiSI CCGG 2 cut(s) 57, 135
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 1 cut(s) 60
BspPI GGATC 1 cut(s) 186
BsrFI RCCGGY 2 cut(s) 56, 134
BssAI RCCGGY 2 cut(s) 56, 134
BssMI GATC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 40, 86
BstNSI RCATGY 1 cut(s) 247
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 62
Cfr10I RCCGGY 2 cut(s) 56, 134
CviAII CATG 1 cut(s) 244
CviJI RGCY 5 cut(s) 34, 64, 80, 128, 238
CviKI_1 RGCY 5 cut(s) 34, 64, 80, 128, 238
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DraI TTTAAA 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 1 cut(s) 247
FaiI YATR 3 cut(s) 77, 153, 245
FatI CATG 1 cut(s) 243
FauI CCCGC 1 cut(s) 53
FokI GGATG 1 cut(s) 215
HapII CCGG 2 cut(s) 57, 135
Hin1II CATG 1 cut(s) 247
HinfI GANTC 1 cut(s) 95
HpaII CCGG 2 cut(s) 57, 135
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 86
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 70, 148, 149, 185
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 223
MluCI AATT 2 cut(s) 15, 83
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 1 cut(s) 140
MseI TTAA 2 cut(s) 173, 228
MspI CCGG 2 cut(s) 57, 135
MwoI GCNNNNNNNGC 2 cut(s) 40, 86
NdeII GATC 1 cut(s) 178
NlaIII CATG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 247
PciI ACATGT 1 cut(s) 243
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PscI ACATGT 1 cut(s) 243
SaqAI TTAA 2 cut(s) 173, 228
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 1 cut(s) 89
SetI ASST 1 cut(s) 36
SgrAI CRCCGGYG 1 cut(s) 56
Sse9I AATT 2 cut(s) 15, 83
SsiI CCGC 1 cut(s) 60
TasI AATT 2 cut(s) 15, 83
Tru1I TTAA 2 cut(s) 173, 228
Tru9I TTAA 2 cut(s) 173, 228
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 41
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.