Rh5DG252400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
29132408 .. 29132596
189 bp
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UTR
Exon/CDS
Intron
Rh5DG252400.1

Sequence Viewer

Length: 189 bp
ATGGAGGAGATGCAAGCAAAAATGGAGAAGATGCAGGAAGACATGACTATCGTAAAGCAACAACATCAGATATCAGCCAAACATGTAGAAAGATCAGATCACCCAAAAAAGATGCCAGACAGAAGCATTCATGGAGCAGATCTTCCTGAGAACAATCGGAAAAAGATCTTCATCCGTTCCCGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.41

Weight (kDa)

9.52

Isoelectric Point (pI)

69.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016788)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20870
malus_domestica MD03G1219700.v1.1
prunus_persica Prupe.4G189200_v2.0.a1
pyrus_communis pycom03g16910
rosa_laevigata RLG00000033612
rosa_multiflora Rmu_sc0007948.1_g000002 Rmu_sc0008116.1_g000008
rosa_roxburghii Rroxscaffold_1G00045130
rosa_rugosa Rorug05G0150900
rosa_samantha Rh5BG243300 Rh5CG275000 Rh5DG252400 Rh5DG252500
rosa_wichuraiana Rw5G022270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 45
BglII AGATCT 2 cut(s) 139, 165
BmsI GCATC 2 cut(s) 21, 102
BpiI GAAGAC 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 170
BseGI GGATG 1 cut(s) 171
BseJI GATNNNNATC 1 cut(s) 170
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 20
BsmI GAATGC 1 cut(s) 126
Bsp143I GATC 4 cut(s) 92, 97, 139, 165
BspCNI CTCAG 1 cut(s) 139
BssMI GATC 4 cut(s) 92, 97, 139, 165
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 4 cut(s) 95, 100, 142, 168
BstMBI GATC 4 cut(s) 92, 97, 139, 165
BstNSI RCATGY 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 139, 165
BstYI RGATCY 2 cut(s) 139, 165
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 15
CviAII CATG 3 cut(s) 43, 83, 131
CviJI RGCY 1 cut(s) 77
CviKI_1 RGCY 1 cut(s) 77
DdeI CTNAG 1 cut(s) 147
DpnI GATC 4 cut(s) 94, 99, 141, 167
DpnII GATC 4 cut(s) 92, 97, 139, 165
Eco32I GATATC 1 cut(s) 72
EcoRV GATATC 1 cut(s) 72
FaeI CATG 3 cut(s) 46, 86, 134
FaiI YATR 3 cut(s) 44, 84, 132
FatI CATG 3 cut(s) 42, 82, 130
FokI GGATG 1 cut(s) 158
FspEI CC 9 cut(s) 8, 20, 91, 116, 117, 117, 129, 142, 159
Hin1II CATG 3 cut(s) 46, 86, 134
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 69, 97, 159
Hpy188III TCNNGA 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 13, 34
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 46, 86, 134
Kzo9I GATC 4 cut(s) 92, 97, 139, 165
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 3 cut(s) 20, 129, 159
LweI GCATC 2 cut(s) 21, 102
MalI GATC 4 cut(s) 94, 99, 141, 167
MboI GATC 4 cut(s) 92, 97, 139, 165
MboII GAAGA 4 cut(s) 40, 50, 134, 160
MflI RGATCY 2 cut(s) 139, 165
Mva1269I GAATGC 1 cut(s) 126
NdeII GATC 4 cut(s) 92, 97, 139, 165
NlaIII CATG 3 cut(s) 46, 86, 134
NspI RCATGY 1 cut(s) 86
PciI ACATGT 1 cut(s) 82
PctI GAATGC 1 cut(s) 126
PscI ACATGT 1 cut(s) 82
PsuI RGATCY 2 cut(s) 139, 165
Sau3AI GATC 4 cut(s) 92, 97, 139, 165
SfaNI GCATC 2 cut(s) 21, 102
SgeI CNNG 7 cut(s) 26, 47, 55, 95, 128, 143, 158
TspDTI ATGAA 2 cut(s) 119, 160
TspGWI ACGGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.