Rorug05G0150900
MYB Family

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000329
Physical Location & Seq
Reverse (-)
13972917 .. 13974482
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0150900.1

Sequence Viewer

Length: 387 bp
ATGGCCAATTTTGTTCTGCAAGTTCCAAATAGCCTGAGGAGCTTCACCATTTCAGCTTCTGCTTCATCTAATGGGTCTCCTCCTTTGAGTTCTAGCGGTAGTAGTGGTGGGGGTGGCGGTCCTGTGATATTGGAGCTTCCTGTTGATAAGATAAGGAGGCCTTTGATGAGAACCAGAGCTAATGATCCGGTCAAGGTTCAAGAACTGATGGATAGCATAAGTGAAATTGGCCTCCAAGTACCTATTGATGTGCTTGAGGTCGATGGAGTTTATTATGGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGCGCCTTGGGCTCCCAACAATACGTTGCAAAATTCGACGTGGGACAAAAGAAACTCTCCGGCATCACCTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

128

Amino Acids

13.95

Weight (kDa)

9.69

Isoelectric Point (pI)

58.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParB_N PF02195 44 - 126 4.7e-16 ParB N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 96, 117, 382
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 342
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 1 cut(s) 200
AjiI CACGTC 1 cut(s) 350
AluBI AGCT 5 cut(s) 42, 56, 136, 179, 305
AluI AGCT 5 cut(s) 42, 56, 136, 179, 305
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 3 cut(s) 3, 158, 229
ApoI RAATTY 1 cut(s) 342
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 3 cut(s) 37, 299, 368
AvaII GGWCC 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 35
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 324
BccI CCATC 2 cut(s) 202, 257
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 323
BmsI GCATC 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 316
BsaWI WCCGGW 1 cut(s) 187
Bse21I CCTNAGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 26
BseRI GAGGAG 2 cut(s) 52, 69
BshFI GGCC 3 cut(s) 5, 160, 231
BsiSI CCGG 2 cut(s) 188, 370
BslFI GGGAC 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 3 cut(s) 5, 160, 231
Bso31I GGTCTC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 3 cut(s) 96, 117, 382
BspANI GGCC 3 cut(s) 5, 160, 231
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 323
BspPI GGATC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 39, 319
BstXI CCANNNNNNTGG 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 3 cut(s) 5, 160, 231
BtgZI GCGATG 1 cut(s) 278
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 293
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 239
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 35
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 316
Eco147I AGGCCT 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 119
Eco81I CCTNAGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 316
FaiI YATR 3 cut(s) 218, 276, 300
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FaqI GGGAC 1 cut(s) 367
FokI GGATG 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 324
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 3 cut(s) 5, 160, 231
HapII CCGG 2 cut(s) 188, 370
HhaI GCGC 1 cut(s) 315
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HpaII CCGG 2 cut(s) 188, 370
HphI GGTGA 3 cut(s) 37, 299, 368
Hpy188III TCNNGA 2 cut(s) 200, 285
Hpy99I CGWCG 1 cut(s) 351
HpyCH4IV ACGT 2 cut(s) 334, 349
HpyCH4V TGCA 2 cut(s) 19, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 319
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 2 cut(s) 334, 349
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 3 cut(s) 39, 133, 327
LpnPI CCDG 8 cut(s) 47, 135, 153, 187, 201, 270, 323, 383
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 334, 349
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 7, 225, 342
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 30, 90, 150, 242, 250
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 384
MspI CCGG 2 cut(s) 188, 370
MwoI GCNNNNNNNGC 2 cut(s) 39, 319
NdeII GATC 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 323
PceI AGGCCT 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 297
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 119
SduI GDGCHC 1 cut(s) 324
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 3 cut(s) 7, 225, 342
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 3 cut(s) 96, 117, 382
SspMI CTAG 1 cut(s) 93
StuI AGGCCT 1 cut(s) 160
StyI CCWWGG 1 cut(s) 316
TaiI ACGT 2 cut(s) 337, 352
TaqI TCGA 2 cut(s) 261, 346
TasI AATT 3 cut(s) 7, 225, 342
TspDTI ATGAA 2 cut(s) 54, 315
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 1 cut(s) 342
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.