RLG00000002538
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000329
Physical Location & Seq
Reverse (-)
35992430 .. 35996233
3804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002538

Sequence Viewer

Length: 597 bp
ATGGTTGATCCACAACAAGATGGAAAAAAAAATGGGAATTATGAGCAGTGGACCAAGGAAGAGAGTGATACCTTATTAGAACTAATGGTTGATGCCGCCGTTAGGGGATGGCGTGACAATAGTGGCATCTTAAGTAAGCAAACAGTGGAAGAAAGAATACTTCCTATTCTTAATGCAAAACTTGGGTGTCACAAGACCTACAAAAACTACCAAAGCAGGCGGACGATACGAGTTTGCGAAGTGGATTCGGTTCGGAGTGGGAGGTTGGTGGCGGGCTCTGGCTGGGCTGCTGTGGATGGCTTTCCATGTGGTGCTCCTGGTCAGACATGGCTGGCTCCGATCTCCCATGGCTGTCATAACTTCGGCAATTTGAGAACTGCACACTATGACGGAAAGTCAAAGGAAATGATGGCTGAAGGTGAACCTCGGTGTGGATGGAGTGGGGCTCTTGGGGAGGATGACGACGCTGGGATTGAGGTTGGTGATGGGCTTGAGGGGGCTGGTGCTGAAGATGGTGAGGTAGAAGACGGAGAGGGATTGGATGCGGCGAGCGATGAGGTGGGTGTATTGGGAGCCGTAGTCGAGGATGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

199

Amino Acids

21.23

Weight (kDa)

4.48

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 96, 220, 272, 545
AclWI GGATC 1 cut(s) 2
AcuI CTGAAG 2 cut(s) 435, 528
AfiI CCNNNNNNNGG 2 cut(s) 102, 431
AflII CTTAAG 1 cut(s) 130
AhdI GACNNNNNGTC 1 cut(s) 394
AjnI CCWGG 1 cut(s) 316
Alw21I GWGCWC 1 cut(s) 316
AlwI GGATC 1 cut(s) 2
ApeKI GCWGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 431, 494, 527
AvaII GGWCC 1 cut(s) 51
BanII GRGCYC 2 cut(s) 278, 448
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 274
BccI CCATC 7 cut(s) 14, 102, 290, 403, 429, 479, 506
BceAI ACGGC 2 cut(s) 83, 560
BciT130I CCWGG 1 cut(s) 318
BfaI CTAG 1 cut(s) 595
BfrI CTTAAG 1 cut(s) 130
BisI GCNGC 3 cut(s) 96, 288, 546
BlsI GCNGC 3 cut(s) 97, 289, 547
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 51
BmeRI GACNNNNNGTC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 336, 574
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 3 cut(s) 82, 135, 532
BpiI GAAGAC 1 cut(s) 531
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BpuEI CTTGAG 1 cut(s) 512
BsaJI CCNNGG 3 cut(s) 54, 346, 425
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 431
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 3 cut(s) 54, 346, 425
BseGI GGATG 6 cut(s) 113, 301, 440, 463, 547, 592
BseLI CCNNNNNNNGG 2 cut(s) 102, 431
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 2 cut(s) 282, 467
BsgI GTGCAG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 102, 431
Bsp1286I GDGCHC 3 cut(s) 278, 316, 448
Bsp143I GATC 2 cut(s) 7, 339
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 4 cut(s) 96, 220, 272, 545
BspLI GGNNCC 2 cut(s) 336, 574
BspPI GGATC 1 cut(s) 2
BspTI CTTAAG 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 54, 346, 425
BssMI GATC 2 cut(s) 7, 339
BssT1I CCWWGG 2 cut(s) 54, 346
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 130
BstC8I GCNNGC 4 cut(s) 218, 274, 333, 550
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 6 cut(s) 113, 301, 440, 463, 547, 592
BstKTI GATC 2 cut(s) 10, 342
BstMBI GATC 2 cut(s) 7, 339
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 346
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 6 cut(s) 113, 301, 440, 463, 547, 592
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 53, 150
Cac8I GCNNGC 4 cut(s) 218, 274, 333, 550
Cfr13I GGNCC 1 cut(s) 51
CseI GACGC 1 cut(s) 473
CviAII CATG 3 cut(s) 306, 327, 347
DpnI GATC 2 cut(s) 9, 341
DpnII GATC 2 cut(s) 7, 339
DriI GACNNNNNGTC 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 54
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 54, 346
Eco24I GRGCYC 2 cut(s) 278, 448
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 435, 528
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 54, 346
EcoT38I GRGCYC 2 cut(s) 278, 448
ErhI CCWWGG 2 cut(s) 54, 346
FaeI CATG 3 cut(s) 309, 330, 350
FaiI YATR 6 cut(s) 42, 307, 328, 348, 357, 387
FatI CATG 3 cut(s) 305, 326, 346
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 96, 288, 546
FokI GGATG 5 cut(s) 120, 308, 447, 470, 554
FriOI GRGCYC 2 cut(s) 278, 448
Fsp4HI GCNGC 3 cut(s) 96, 288, 546
FspBI CTAG 1 cut(s) 595
GluI GCNGC 3 cut(s) 96, 288, 546
GsaI CCCAGC 2 cut(s) 286, 471
HgaI GACGC 1 cut(s) 473
Hin1II CATG 3 cut(s) 309, 330, 350
HinfI GANTC 1 cut(s) 245
HphI GGTGA 3 cut(s) 431, 494, 527
Hpy166II GTNNAC 2 cut(s) 51, 422
Hpy188I TCNGA 3 cut(s) 255, 324, 339
Hpy8I GTNNAC 2 cut(s) 51, 422
Hpy99I CGWCG 1 cut(s) 467
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 176, 380
Hsp92II CATG 3 cut(s) 309, 330, 350
Kzo9I GATC 2 cut(s) 7, 339
LmnI GCTCC 3 cut(s) 319, 340, 572
LpnPI CCDG 8 cut(s) 202, 264, 268, 303, 317, 330, 453, 486
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 3 cut(s) 82, 135, 532
MaeI CTAG 1 cut(s) 595
MaeIII GTNAC 2 cut(s) 113, 188
MalI GATC 2 cut(s) 9, 341
MboI GATC 2 cut(s) 7, 339
MboII GAAGA 4 cut(s) 71, 161, 521, 536
MhlI GDGCHC 3 cut(s) 278, 316, 448
MluCI AATT 2 cut(s) 37, 367
MseI TTAA 2 cut(s) 131, 171
MspCI CTTAAG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
NcoI CCATGG 1 cut(s) 346
NdeII GATC 2 cut(s) 7, 339
NlaIII CATG 3 cut(s) 309, 330, 350
NlaIV GGNNCC 2 cut(s) 336, 574
NmuCI GTSAC 2 cut(s) 113, 188
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 3 cut(s) 97, 289, 547
Psp6I CCWGG 1 cut(s) 316
PspFI CCCAGC 2 cut(s) 282, 467
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 336, 574
PspPI GGNCC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 131, 171
SatI GCNGC 3 cut(s) 96, 288, 546
Sau3AI GATC 2 cut(s) 7, 339
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 3 cut(s) 278, 316, 448
SetI ASST 8 cut(s) 74, 200, 266, 421, 427, 480, 522, 561
SfaNI GCATC 3 cut(s) 82, 135, 532
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 130, 491
SmoI CTYRAG 2 cut(s) 130, 491
Sse9I AATT 2 cut(s) 37, 367
SsiI CCGC 4 cut(s) 96, 220, 272, 545
SspMI CTAG 1 cut(s) 595
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 2 cut(s) 54, 346
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 582
TasI AATT 2 cut(s) 37, 367
TauI GCSGC 2 cut(s) 98, 548
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 131, 171
Tru9I TTAA 2 cut(s) 131, 171
TscAI CASTG 2 cut(s) 53, 150
TseFI GTSAC 2 cut(s) 113, 188
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 2 cut(s) 113, 188
TspGWI ACGGA 2 cut(s) 405, 543
TspRI CASTG 2 cut(s) 53, 150
Vha464I CTTAAG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 51
XspI CTAG 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.