Rroxscaffold_3G00233710
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000329
Physical Location & Seq
Reverse (-)
19953792 .. 19956351
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233710.1

Sequence Viewer

Length: 1026 bp
ATGGGCTTCTTATTCAGCCCTAATGCGATTCAGCTCGGTTTTGGGTTTGACTCAACTACAAAGAGGTTCACCGCTTCAGATGAAGTATGGGAAGATTACCTAAAGGCTCACCCAAACGATACCAATTTACGCTATGGGATATTTCATGATTATGAGGACTTGGAGATTGCTATTGGGAATGGTGTTGCTGTTGGAAAAAACTCAATGGGGTTGGGTGGTGCTACCGATGCAAGAACATTAGGTGTTGGAGAAGATAGAGATATACGCATAGAAGACTTCGATTATGATGTAGATAGTGATGTGTTCGTAAGACCAAATCAGAATGATCGATCATTTCGCTCCACATCACCTTTAGGGTCGCCTGAAATTTTAGAGGTTCCCAAGCAAGGAAGAACCCAAACCAAAAGAAATAGAACCGAGTATGAAGAAAACACCACTCAAAGTGGCATTATGGAACAACTTAATAAAATTTCGACTACTTTTGAAGGAGCCTATAGCCTATTGGCGAAGAGAGAAAGAGTATTGGAGAAAAGAGAAAGGGAGAGAGAATATACAACTTGGGATGCTATCAAGGAGATCCCAAACATGGAAGAAGCTATTCGTTTCAAGGCGCTTGACAAATTACTTCATCCTAGAGTAATGGAAAAAGAAATAATAGATGACAAAGAAATTGAAGAAATTGAAGAAGAACTTTATGAAAAAGTTGAGTATTTATTGATGGCAATTGAAGCAGTAATCGTTGTGTTGAGAGAGATTATGATTAGGCCTCGACGTATTGAGCGTTCGCTCAAACGACGACCAGTTACCAGCCAACAACAACAAAGAGCGGAAGCTAATGCTTGGAGAATTAGCATTGCCGATGCTATGTGGAATGATAGGCCGCGGAATGAAGACAATGGAAATCAAGAGGATAACAATGAGGATCAAGACAATGACAATGAGAATAATGAGGAACACATAAATGATGAGAATCGGGAGGTTTACGATGATAATGAGGTTGGAATGGAGGAATATGCATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

341

Amino Acids

39.73

Weight (kDa)

4.58

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 187 - 208 5.3e-08 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 827
AccII CGCG 1 cut(s) 883
AciI CCGC 4 cut(s) 72, 827, 881, 883
AclWI GGATC 2 cut(s) 571, 930
AcsI RAATTY 2 cut(s) 366, 468
AcuI CTGAAG 1 cut(s) 60
AfiI CCNNNNNNNGG 2 cut(s) 386, 586
AgsI TTSAA 5 cut(s) 485, 607, 674, 683, 728
AluBI AGCT 3 cut(s) 34, 596, 833
AluI AGCT 3 cut(s) 34, 596, 833
AlwI GGATC 2 cut(s) 571, 930
AoxI GGCC 2 cut(s) 764, 878
ApoI RAATTY 2 cut(s) 366, 468
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 1 cut(s) 613
AsuHPI GGTGA 3 cut(s) 61, 101, 339
BbsI GAAGAC 2 cut(s) 279, 897
BccI CCATC 1 cut(s) 712
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 614
BisI GCNGC 1 cut(s) 881
BlsI GCNGC 1 cut(s) 882
BmiI GGNNCC 2 cut(s) 378, 490
BmsI GCATC 3 cut(s) 217, 553, 850
BpiI GAAGAC 2 cut(s) 279, 897
Bsa29I ATCGAT 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 969
BsaJI CCNNGG 1 cut(s) 881
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 586
Bse1I ACTGG 1 cut(s) 800
Bse3DI GCAATG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 969
BseCI ATCGAT 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 881
BseGI GGATG 2 cut(s) 568, 628
BseJI GATNNNNATC 1 cut(s) 969
BseLI CCNNNNNNNGG 2 cut(s) 386, 586
BseMI GCAATG 1 cut(s) 852
BseNI ACTGG 1 cut(s) 800
Bsh1236I CGCG 1 cut(s) 883
BshFI GGCC 2 cut(s) 766, 880
BshVI ATCGAT 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 386, 586
BsnI GGCC 2 cut(s) 766, 880
Bsp143I GATC 4 cut(s) 325, 329, 576, 922
BspACI CCGC 4 cut(s) 72, 827, 881, 883
BspANI GGCC 2 cut(s) 766, 880
BspDI ATCGAT 1 cut(s) 328
BspFNI CGCG 1 cut(s) 883
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 378, 490
BspPI GGATC 2 cut(s) 571, 930
BsrBI CCGCTC 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 852
BsrI ACTGG 1 cut(s) 800
BssECI CCNNGG 1 cut(s) 881
BssMI GATC 4 cut(s) 325, 329, 576, 922
Bst6I CTCTTC 1 cut(s) 503
BstDSI CCRYGG 1 cut(s) 881
BstF5I GGATG 2 cut(s) 568, 628
BstFNI CGCG 1 cut(s) 883
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 4 cut(s) 328, 332, 579, 925
BstMBI GATC 4 cut(s) 325, 329, 576, 922
BstMWI GCNNNNNNNGC 2 cut(s) 227, 728
BstSFI CTRYAG 1 cut(s) 493
BstUI CGCG 1 cut(s) 883
BstV2I GAAGAC 2 cut(s) 279, 897
BstX2I RGATCY 1 cut(s) 576
BstYI RGATCY 1 cut(s) 576
Bsu15I ATCGAT 1 cut(s) 328
BsuRI GGCC 2 cut(s) 766, 880
BsuTUI ATCGAT 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 881
BtsCI GGATG 2 cut(s) 568, 628
CciI TCATGA 1 cut(s) 145
CfoI GCGC 1 cut(s) 613
Cfr42I CCGCGG 1 cut(s) 884
ClaI ATCGAT 1 cut(s) 328
CviAII CATG 2 cut(s) 146, 586
DpnI GATC 4 cut(s) 327, 331, 578, 924
DpnII GATC 4 cut(s) 325, 329, 576, 922
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
Eco147I AGGCCT 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 1018
FaeI CATG 2 cut(s) 149, 589
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FatI CATG 2 cut(s) 145, 585
Fnu4HI GCNGC 1 cut(s) 881
FokI GGATG 2 cut(s) 575, 615
Fsp4HI GCNGC 1 cut(s) 881
FspBI CTAG 1 cut(s) 633
GlaI GCGC 1 cut(s) 612
GluI GCNGC 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 614
HaeIII GGCC 2 cut(s) 766, 880
HhaI GCGC 1 cut(s) 613
Hin1II CATG 2 cut(s) 149, 589
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HinfI GANTC 3 cut(s) 28, 50, 970
HphI GGTGA 3 cut(s) 61, 101, 339
Hpy166II GTNNAC 2 cut(s) 69, 982
Hpy188I TCNGA 2 cut(s) 79, 321
Hpy188III TCNNGA 4 cut(s) 146, 905, 926, 974
Hpy8I GTNNAC 2 cut(s) 69, 982
Hpy99I CGWCG 2 cut(s) 774, 798
HpyAV CCTTC 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 772
HpyCH4V TGCA 2 cut(s) 230, 1016
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 728
HpySE526I ACGT 1 cut(s) 772
Hsp92II CATG 2 cut(s) 149, 589
HspAI GCGC 1 cut(s) 611
KspI CCGCGG 1 cut(s) 884
Kzo9I GATC 4 cut(s) 325, 329, 576, 922
LmnI GCTCC 2 cut(s) 344, 488
LpnPI CCDG 3 cut(s) 375, 813, 820
LweI GCATC 3 cut(s) 217, 553, 850
MaeI CTAG 1 cut(s) 633
MaeII ACGT 1 cut(s) 772
MaeIII GTNAC 1 cut(s) 802
MalI GATC 4 cut(s) 327, 331, 578, 924
MbiI CCGCTC 1 cut(s) 827
MboI GATC 4 cut(s) 325, 329, 576, 922
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 1 cut(s) 576
MluCI AATT 8 cut(s) 124, 366, 468, 620, 669, 678, 723, 846
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 3 cut(s) 172, 226, 979
Mph1103I ATGCAT 1 cut(s) 1018
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 2 cut(s) 150, 960
MspA1I CMGCKG 1 cut(s) 883
MunI CAATTG 1 cut(s) 723
MvnI CGCG 1 cut(s) 883
MwoI GCNNNNNNNGC 2 cut(s) 227, 728
NdeII GATC 4 cut(s) 325, 329, 576, 922
NlaIII CATG 2 cut(s) 149, 589
NlaIV GGNNCC 2 cut(s) 378, 490
NsiI ATGCAT 1 cut(s) 1018
PagI TCATGA 1 cut(s) 145
PceI AGGCCT 1 cut(s) 766
PcsI WCGNNNNNNNCGW 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 28, 970
PkrI GCNGC 1 cut(s) 882
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 378, 490
PsrI GAACNNNNNNTAC 2 cut(s) 766, 798
PsuI RGATCY 1 cut(s) 576
RseI CAYNNNNRTG 2 cut(s) 150, 960
SacII CCGCGG 1 cut(s) 884
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 1 cut(s) 881
Sau3AI GATC 4 cut(s) 325, 329, 576, 922
SchI GAGTC 1 cut(s) 44
SfaNI GCATC 3 cut(s) 217, 553, 850
SfcI CTRYAG 1 cut(s) 493
Sfr303I CCGCGG 1 cut(s) 884
SgrBI CCGCGG 1 cut(s) 884
SmiMI CAYNNNNRTG 2 cut(s) 150, 960
Sse9I AATT 8 cut(s) 124, 366, 468, 620, 669, 678, 723, 846
SseBI AGGCCT 1 cut(s) 766
SsiI CCGC 4 cut(s) 72, 827, 881, 883
SspMI CTAG 1 cut(s) 633
StuI AGGCCT 1 cut(s) 766
TaiI ACGT 1 cut(s) 775
TaqI TCGA 4 cut(s) 279, 328, 473, 769
TasI AATT 8 cut(s) 124, 366, 468, 620, 669, 678, 723, 846
TauI GCSGC 1 cut(s) 883
TfiI GAWTC 2 cut(s) 28, 970
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TspDTI ATGAA 6 cut(s) 96, 134, 438, 617, 711, 903
XapI RAATTY 2 cut(s) 366, 468
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 1 cut(s) 633
Zsp2I ATGCAT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.