At2g29880-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 2 - 81 | 2e-11 | TIR domain |
| NB-ARC | PF00931 | 100 - 267 | 1.5e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 338 - 407 | 4.2e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 629 - 746 | 8.5e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 666 - 878 | 2e-17 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 942, 1394, 3243 |
| AccBSI | CCGCTC | 1 cut(s) | 2514 |
| AccI | GTMKAC | 1 cut(s) | 904 |
| AccII | CGCG | 3 cut(s) | 90, 1095, 2402 |
| AciI | CCGC | 9 cut(s) | 90, 1093, 1447, 1537, 2333, 2361, 2514, 2851, 3369 |
| AcoI | YGGCCR | 1 cut(s) | 8 |
| AcuI | CTGAAG | 2 cut(s) | 760, 2295 |
| AfaI | GTAC | 6 cut(s) | 294, 336, 1617, 1675, 2231, 2979 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1703, 1913, 2263, 2412, 3267 |
| AflIII | ACRYGT | 2 cut(s) | 2980, 3098 |
| AjnI | CCWGG | 6 cut(s) | 740, 873, 1228, 1656, 1866, 1975 |
| Alw21I | GWGCWC | 3 cut(s) | 649, 774, 2501 |
| Alw26I | GTCTC | 2 cut(s) | 291, 2668 |
| Ama87I | CYCGRG | 2 cut(s) | 288, 1348 |
| AoxI | GGCC | 6 cut(s) | 8, 164, 738, 859, 3017, 3410 |
| AseI | ATTAAT | 1 cut(s) | 2010 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2280 |
| AspLEI | GCGC | 5 cut(s) | 1138, 1239, 2375, 2453, 3090 |
| AspS9I | GGNCC | 1 cut(s) | 622 |
| AsuHPI | GGTGA | 8 cut(s) | 77, 113, 127, 1199, 1244, 1895, 2350, 3202 |
| AsuII | TTCGAA | 1 cut(s) | 2603 |
| AvaI | CYCGRG | 2 cut(s) | 288, 1348 |
| AvaII | GGWCC | 1 cut(s) | 622 |
| AxyI | CCTNAGG | 1 cut(s) | 3330 |
| BamHI | GGATCC | 4 cut(s) | 1559, 1706, 1916, 3147 |
| BanII | GRGCYC | 2 cut(s) | 774, 2501 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1326, 1358 |
| BauI | CACGAG | 1 cut(s) | 855 |
| BbsI | GAAGAC | 2 cut(s) | 380, 3180 |
| Bbv12I | GWGCWC | 3 cut(s) | 649, 774, 2501 |
| BccI | CCATC | 7 cut(s) | 929, 986, 1145, 1186, 1309, 2647, 2692 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1426, 1460, 2509, 2543 |
| BciT130I | CCWGG | 6 cut(s) | 742, 875, 1230, 1658, 1868, 1977 |
| BclI | TGATCA | 1 cut(s) | 2926 |
| BcoDI | GTCTC | 2 cut(s) | 291, 2668 |
| BfmI | CTRYAG | 3 cut(s) | 1221, 1780, 2518 |
| BfoI | RGCGCY | 2 cut(s) | 1139, 2454 |
| BglII | AGATCT | 1 cut(s) | 2179 |
| Bme1390I | CCNGG | 6 cut(s) | 742, 875, 1230, 1658, 1868, 1977 |
| Bme18I | GGWCC | 1 cut(s) | 622 |
| BmeT110I | CYCGRG | 2 cut(s) | 288, 1348 |
| BmgT120I | GGNCC | 1 cut(s) | 622 |
| BmiI | GGNNCC | 6 cut(s) | 1561, 1708, 1918, 2331, 2808, 3149 |
| BmrFI | CCNGG | 6 cut(s) | 742, 875, 1230, 1658, 1868, 1977 |
| BpiI | GAAGAC | 2 cut(s) | 380, 3180 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 118, 150, 960, 992, 1730, 1762 |
| BpmI | CTGGAG | 6 cut(s) | 663, 2011, 2054, 2234, 2692, 3326 |
| Bpu14I | TTCGAA | 1 cut(s) | 2603 |
| BpuEI | CTTGAG | 2 cut(s) | 2101, 2515 |
| BsaAI | YACGTR | 2 cut(s) | 2981, 3099 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1431 |
| BsaJI | CCNNGG | 3 cut(s) | 741, 873, 3119 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 462, 492, 2665, 2695 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1703, 1913, 2263, 2412, 3267 |
| Bse118I | RCCGGY | 1 cut(s) | 2562 |
| Bse1I | ACTGG | 8 cut(s) | 272, 625, 1002, 1994, 2101, 2789, 3213, 3309 |
| Bse21I | CCTNAGG | 1 cut(s) | 3330 |
| Bse3DI | GCAATG | 3 cut(s) | 1029, 2108, 3083 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1431 |
| BseBI | CCWGG | 6 cut(s) | 742, 875, 1230, 1658, 1868, 1977 |
| BseDI | CCNNGG | 3 cut(s) | 741, 873, 3119 |
| BseJI | GATNNNNATC | 1 cut(s) | 1431 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1703, 1913, 2263, 2412, 3267 |
| BseMI | GCAATG | 3 cut(s) | 1029, 2108, 3083 |
| BseMII | CTCAG | 3 cut(s) | 1557, 2774, 3321 |
| BseNI | ACTGG | 8 cut(s) | 272, 625, 1002, 1994, 2101, 2789, 3213, 3309 |
| BseRI | GAGGAG | 1 cut(s) | 465 |
| BsgI | GTGCAG | 4 cut(s) | 213, 1286, 2008, 3020 |
| Bsh1236I | CGCG | 3 cut(s) | 90, 1095, 2402 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1093 |
| BshFI | GGCC | 6 cut(s) | 10, 166, 740, 861, 3019, 3412 |
| BsiEI | CGRYCG | 1 cut(s) | 1093 |
| BsiHKAI | GWGCWC | 3 cut(s) | 649, 774, 2501 |
| BsiHKCI | CYCGRG | 2 cut(s) | 288, 1348 |
| BsiSI | CCGG | 1 cut(s) | 2563 |
| BslFI | GGGAC | 4 cut(s) | 1613, 2389, 2906, 3243 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1703, 1913, 2263, 2412, 3267 |
| BsmAI | GTCTC | 2 cut(s) | 291, 2668 |
| BsmFI | GGGAC | 4 cut(s) | 1613, 2389, 2906, 3243 |
| BsmI | GAATGC | 2 cut(s) | 2477, 3329 |
| BsnI | GGCC | 6 cut(s) | 10, 166, 740, 861, 3019, 3412 |
| BsoBI | CYCGRG | 2 cut(s) | 288, 1348 |
| Bsp119I | TTCGAA | 1 cut(s) | 2603 |
| Bsp1286I | GDGCHC | 3 cut(s) | 649, 774, 2501 |
| Bsp1407I | TGTACA | 2 cut(s) | 1673, 2229 |
| BspACI | CCGC | 9 cut(s) | 90, 1093, 1447, 1537, 2333, 2361, 2514, 2851, 3369 |
| BspANI | GGCC | 6 cut(s) | 10, 166, 740, 861, 3019, 3412 |
| BspCNI | CTCAG | 3 cut(s) | 1556, 2773, 3322 |
| BspFNI | CGCG | 3 cut(s) | 90, 1095, 2402 |
| BspHI | TCATGA | 1 cut(s) | 808 |
| BspLI | GGNNCC | 6 cut(s) | 1561, 1708, 1918, 2331, 2808, 3149 |
| BspMAI | CTGCAG | 2 cut(s) | 1784, 2522 |
| BspQI | GCTCTTC | 1 cut(s) | 779 |
| BspT104I | TTCGAA | 1 cut(s) | 2603 |
| BsrBI | CCGCTC | 1 cut(s) | 2514 |
| BsrDI | GCAATG | 3 cut(s) | 1029, 2108, 3083 |
| BsrFI | RCCGGY | 1 cut(s) | 2562 |
| BsrGI | TGTACA | 2 cut(s) | 1673, 2229 |
| BsrI | ACTGG | 8 cut(s) | 272, 625, 1002, 1994, 2101, 2789, 3213, 3309 |
| BssAI | RCCGGY | 1 cut(s) | 2562 |
| BssECI | CCNNGG | 3 cut(s) | 741, 873, 3119 |
| BssSI | CACGAG | 1 cut(s) | 855 |
| BssT1I | CCWWGG | 1 cut(s) | 3119 |
| Bst2BI | CACGAG | 1 cut(s) | 855 |
| Bst2UI | CCWGG | 6 cut(s) | 742, 875, 1230, 1658, 1868, 1977 |
| Bst4CI | ACNGT | 5 cut(s) | 532, 712, 1410, 1604, 3003 |
| Bst6I | CTCTTC | 3 cut(s) | 213, 779, 2744 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1180 |
| BstAUI | TGTACA | 2 cut(s) | 1673, 2229 |
| BstBAI | YACGTR | 2 cut(s) | 2981, 3099 |
| BstBI | TTCGAA | 1 cut(s) | 2603 |
| BstC8I | GCNNGC | 2 cut(s) | 924, 1172 |
| BstDEI | CTNAG | 8 cut(s) | 845, 1520, 1543, 1648, 1664, 1874, 2760, 3330 |
| BstEII | GGTNACC | 1 cut(s) | 3364 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1701 |
| BstFNI | CGCG | 3 cut(s) | 90, 1095, 2402 |
| BstH2I | RGCGCY | 2 cut(s) | 1139, 2454 |
| BstHHI | GCGC | 5 cut(s) | 1138, 1239, 2375, 2453, 3090 |
| BstMAI | GTCTC | 2 cut(s) | 291, 2668 |
| BstMCI | CGRYCG | 1 cut(s) | 1093 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 919, 1180, 1234, 3085 |
| BstNI | CCWGG | 6 cut(s) | 742, 875, 1230, 1658, 1868, 1977 |
| BstNSI | RCATGY | 4 cut(s) | 304, 854, 926, 1174 |
| BstPI | GGTNACC | 1 cut(s) | 3364 |
| BstSCI | CCNGG | 6 cut(s) | 740, 873, 1228, 1656, 1866, 1975 |
| BstSFI | CTRYAG | 3 cut(s) | 1221, 1780, 2518 |
| BstUI | CGCG | 3 cut(s) | 90, 1095, 2402 |
| BstV2I | GAAGAC | 2 cut(s) | 380, 3180 |
| BstX2I | RGATCY | 9 cut(s) | 1559, 1660, 1706, 1784, 1870, 1916, 1994, 2179, 3147 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1570, 3004 |
| BstYI | RGATCY | 9 cut(s) | 1559, 1660, 1706, 1784, 1870, 1916, 1994, 2179, 3147 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3330 |
| BsuRI | GGCC | 6 cut(s) | 10, 166, 740, 861, 3019, 3412 |
| BtsI | GCAGTG | 1 cut(s) | 427 |
| BtsIMutI | CAGTG | 2 cut(s) | 427, 2094 |
| Cac8I | GCNNGC | 2 cut(s) | 924, 1172 |
| CciI | TCATGA | 1 cut(s) | 808 |
| CfoI | GCGC | 5 cut(s) | 1138, 1239, 2375, 2453, 3090 |
| Cfr10I | RCCGGY | 1 cut(s) | 2562 |
| Cfr13I | GGNCC | 1 cut(s) | 622 |
| CseI | GACGC | 7 cut(s) | 554, 641, 1768, 2391, 2738, 3068, 3353 |
| Csp6I | GTAC | 6 cut(s) | 293, 335, 1616, 1674, 2230, 2978 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2247, 2282, 3124, 3159 |
| CviQI | GTAC | 6 cut(s) | 293, 335, 1616, 1674, 2230, 2978 |
| DdeI | CTNAG | 8 cut(s) | 845, 1520, 1543, 1648, 1664, 1874, 2760, 3330 |
| DraI | TTTAAA | 1 cut(s) | 1683 |
| EaeI | YGGCCR | 1 cut(s) | 8 |
| Eam1104I | CTCTTC | 3 cut(s) | 213, 779, 2744 |
| EarI | CTCTTC | 3 cut(s) | 213, 779, 2744 |
| Ecl136II | GAGCTC | 2 cut(s) | 772, 2499 |
| Eco130I | CCWWGG | 1 cut(s) | 3119 |
| Eco24I | GRGCYC | 2 cut(s) | 774, 2501 |
| Eco32I | GATATC | 1 cut(s) | 2129 |
| Eco47I | GGWCC | 1 cut(s) | 622 |
| Eco53kI | GAGCTC | 2 cut(s) | 772, 2499 |
| Eco57I | CTGAAG | 2 cut(s) | 760, 2295 |
| Eco81I | CCTNAGG | 1 cut(s) | 3330 |
| Eco88I | CYCGRG | 2 cut(s) | 288, 1348 |
| Eco91I | GGTNACC | 1 cut(s) | 3364 |
| EcoICRI | GAGCTC | 2 cut(s) | 772, 2499 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1701 |
| EcoO65I | GGTNACC | 1 cut(s) | 3364 |
| EcoRI | GAATTC | 1 cut(s) | 1607 |
| EcoRII | CCWGG | 6 cut(s) | 740, 873, 1228, 1656, 1866, 1975 |
| EcoRV | GATATC | 1 cut(s) | 2129 |
| EcoT14I | CCWWGG | 1 cut(s) | 3119 |
| EcoT22I | ATGCAT | 3 cut(s) | 915, 1176, 2477 |
| EcoT38I | GRGCYC | 2 cut(s) | 774, 2501 |
| ErhI | CCWWGG | 1 cut(s) | 3119 |
| FaqI | GGGAC | 4 cut(s) | 1613, 2389, 2906, 3243 |
| FbaI | TGATCA | 1 cut(s) | 2926 |
| FblI | GTMKAC | 1 cut(s) | 904 |
| FriOI | GRGCYC | 2 cut(s) | 774, 2501 |
| GlaI | GCGC | 5 cut(s) | 1137, 1238, 2374, 2452, 3089 |
| GsuI | CTGGAG | 6 cut(s) | 663, 2011, 2054, 2234, 2692, 3326 |
| HaeII | RGCGCY | 2 cut(s) | 1139, 2454 |
| HaeIII | GGCC | 6 cut(s) | 10, 166, 740, 861, 3019, 3412 |
| HapII | CCGG | 1 cut(s) | 2563 |
| HgaI | GACGC | 7 cut(s) | 554, 641, 1768, 2391, 2738, 3068, 3353 |
| HhaI | GCGC | 5 cut(s) | 1138, 1239, 2375, 2453, 3090 |
| Hin6I | GCGC | 5 cut(s) | 1136, 1237, 2373, 2451, 3088 |
| HinP1I | GCGC | 5 cut(s) | 1136, 1237, 2373, 2451, 3088 |
| HincII | GTYRAC | 6 cut(s) | 481, 708, 1777, 1936, 1987, 2491 |
| HindII | GTYRAC | 6 cut(s) | 481, 708, 1777, 1936, 1987, 2491 |
| HindIII | AAGCTT | 3 cut(s) | 762, 1718, 1928 |
| HpaII | CCGG | 1 cut(s) | 2563 |
| HphI | GGTGA | 8 cut(s) | 77, 113, 127, 1199, 1244, 1895, 2350, 3202 |
| HpyCH4III | ACNGT | 5 cut(s) | 532, 712, 1410, 1604, 3003 |
| HpyCH4IV | ACGT | 6 cut(s) | 244, 1398, 2350, 2980, 3098, 3177 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 919, 1180, 1234, 3085 |
| HpyF3I | CTNAG | 8 cut(s) | 845, 1520, 1543, 1648, 1664, 1874, 2760, 3330 |
| HpySE526I | ACGT | 6 cut(s) | 244, 1398, 2350, 2980, 3098, 3177 |
| HspAI | GCGC | 5 cut(s) | 1136, 1237, 2373, 2451, 3088 |
| Ksp22I | TGATCA | 1 cut(s) | 2926 |
| LguI | GCTCTTC | 1 cut(s) | 779 |
| LmnI | GCTCC | 5 cut(s) | 644, 769, 2329, 2623, 2842 |
| MaeII | ACGT | 6 cut(s) | 244, 1398, 2350, 2980, 3098, 3177 |
| MaeIII | GTNAC | 6 cut(s) | 425, 1449, 1756, 2351, 2941, 3364 |
| MbiI | CCGCTC | 1 cut(s) | 2514 |
| MfeI | CAATTG | 2 cut(s) | 381, 405 |
| MflI | RGATCY | 9 cut(s) | 1559, 1660, 1706, 1784, 1870, 1916, 1994, 2179, 3147 |
| MhlI | GDGCHC | 3 cut(s) | 649, 774, 2501 |
| MlyI | GAGTC | 8 cut(s) | 87, 278, 1226, 1360, 2092, 2279, 2742, 3114 |
| MmeI | TCCRAC | 5 cut(s) | 104, 1031, 1894, 2309, 2547 |
| Mph1103I | ATGCAT | 3 cut(s) | 915, 1176, 2477 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2280 |
| MslI | CAYNNNNRTG | 5 cut(s) | 186, 855, 895, 897, 1260 |
| MspA1I | CMGCKG | 1 cut(s) | 2823 |
| MspI | CCGG | 1 cut(s) | 2563 |
| MspR9I | CCNGG | 6 cut(s) | 742, 875, 1230, 1658, 1868, 1977 |
| MunI | CAATTG | 2 cut(s) | 381, 405 |
| Mva1269I | GAATGC | 2 cut(s) | 2477, 3329 |
| MvaI | CCWGG | 6 cut(s) | 742, 875, 1230, 1658, 1868, 1977 |
| MvnI | CGCG | 3 cut(s) | 90, 1095, 2402 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 919, 1180, 1234, 3085 |
| NlaIV | GGNNCC | 6 cut(s) | 1561, 1708, 1918, 2331, 2808, 3149 |
| NmuCI | GTSAC | 3 cut(s) | 425, 1756, 2351 |
| NsiI | ATGCAT | 3 cut(s) | 915, 1176, 2477 |
| NspI | RCATGY | 4 cut(s) | 304, 854, 926, 1174 |
| NspV | TTCGAA | 1 cut(s) | 2603 |
| PaeI | GCATGC | 2 cut(s) | 926, 1174 |
| PagI | TCATGA | 1 cut(s) | 808 |
| PciSI | GCTCTTC | 1 cut(s) | 779 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2609 |
| PctI | GAATGC | 2 cut(s) | 2477, 3329 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2280 |
| PflFI | GACNNNGTC | 1 cut(s) | 2679 |
| PfoI | TCCNGGA | 2 cut(s) | 1656, 1866 |
| PleI | GAGTC | 8 cut(s) | 87, 278, 1225, 1359, 2091, 2278, 2742, 3113 |
| PpsI | GAGTC | 8 cut(s) | 87, 278, 1225, 1359, 2091, 2278, 2742, 3113 |
| Ppu21I | YACGTR | 2 cut(s) | 2981, 3099 |
| PshBI | ATTAAT | 1 cut(s) | 2010 |
| PsiI | TTATAA | 3 cut(s) | 942, 1394, 3243 |
| Psp124BI | GAGCTC | 2 cut(s) | 774, 2501 |
| Psp6I | CCWGG | 6 cut(s) | 740, 873, 1228, 1656, 1866, 1975 |
| PspEI | GGTNACC | 1 cut(s) | 3364 |
| PspGI | CCWGG | 6 cut(s) | 740, 873, 1228, 1656, 1866, 1975 |
| PspN4I | GGNNCC | 6 cut(s) | 1561, 1708, 1918, 2331, 2808, 3149 |
| PspPI | GGNCC | 1 cut(s) | 622 |
| PstI | CTGCAG | 2 cut(s) | 1784, 2522 |
| PsuI | RGATCY | 9 cut(s) | 1559, 1660, 1706, 1784, 1870, 1916, 1994, 2179, 3147 |
| PsyI | GACNNNGTC | 1 cut(s) | 2679 |
| PvuII | CAGCTG | 1 cut(s) | 2823 |
| RsaI | GTAC | 6 cut(s) | 294, 336, 1617, 1675, 2231, 2979 |
| RsaNI | GTAC | 6 cut(s) | 293, 335, 1616, 1674, 2230, 2978 |
| RseI | CAYNNNNRTG | 5 cut(s) | 186, 855, 895, 897, 1260 |
| SacI | GAGCTC | 2 cut(s) | 774, 2501 |
| SapI | GCTCTTC | 1 cut(s) | 779 |
| Sau96I | GGNCC | 1 cut(s) | 622 |
| SchI | GAGTC | 8 cut(s) | 87, 278, 1226, 1360, 2092, 2279, 2742, 3114 |
| ScrFI | CCNGG | 6 cut(s) | 742, 875, 1230, 1658, 1868, 1977 |
| SduI | GDGCHC | 3 cut(s) | 649, 774, 2501 |
| SfcI | CTRYAG | 3 cut(s) | 1221, 1780, 2518 |
| SfuI | TTCGAA | 1 cut(s) | 2603 |
| SinI | GGWCC | 1 cut(s) | 622 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 186, 855, 895, 897, 1260 |
| SmlI | CTYRAG | 2 cut(s) | 2080, 2494 |
| SmoI | CTYRAG | 2 cut(s) | 2080, 2494 |
| SphI | GCATGC | 2 cut(s) | 926, 1174 |
| SsiI | CCGC | 9 cut(s) | 90, 1093, 1447, 1537, 2333, 2361, 2514, 2851, 3369 |
| SspI | AATATT | 2 cut(s) | 1077, 2485 |
| SstI | GAGCTC | 2 cut(s) | 774, 2501 |
| StyD4I | CCNGG | 6 cut(s) | 740, 873, 1228, 1656, 1866, 1975 |
| StyI | CCWWGG | 1 cut(s) | 3119 |
| TaaI | ACNGT | 5 cut(s) | 532, 712, 1410, 1604, 3003 |
| TaiI | ACGT | 6 cut(s) | 247, 1401, 2353, 2983, 3101, 3180 |
| TaqI | TCGA | 8 cut(s) | 96, 967, 1026, 1700, 2603, 2612, 2746, 3103 |
| TatI | WGTACW | 3 cut(s) | 1615, 1673, 2229 |
| TauI | GCSGC | 3 cut(s) | 1539, 2335, 2517 |
| TscAI | CASTG | 2 cut(s) | 434, 2101 |
| TseFI | GTSAC | 3 cut(s) | 425, 1756, 2351 |
| Tsp45I | GTSAC | 3 cut(s) | 425, 1756, 2351 |
| TspGWI | ACGGA | 3 cut(s) | 855, 2161, 3185 |
| TspRI | CASTG | 2 cut(s) | 434, 2101 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2679 |
| VpaK11BI | GGWCC | 1 cut(s) | 622 |
| VspI | ATTAAT | 1 cut(s) | 2010 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1701 |
| XbaI | TCTAGA | 2 cut(s) | 1463, 1735 |
| XceI | RCATGY | 4 cut(s) | 304, 854, 926, 1174 |
| XmiI | GTMKAC | 1 cut(s) | 904 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2280 |
| Zsp2I | ATGCAT | 3 cut(s) | 915, 1176, 2477 |