FvH4_5g24690
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000329
Physical Location & Seq
Reverse (-)
16060218 .. 16061256
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24690.t1

Sequence Viewer

Length: 720 bp
ATGGGAGATTCACAAGGAAATGGTAAACGAAAGGATTATAAAACTTGGACCGCGGAAGAGAGCAATGTTTTGCTCCAGCTCATGGTTGAAGGCGCTAAGCTTGGATTCCGTGATATTAATGGTGTAATAAGCAAAACAACAGTAGAGGCAAAGCTACTTCCTAAACTTAAAGGAAAACTTGTTGGTAATGGAACTGCAACTGGGATGGGGTCAATAGGTCTAGGTGATGATACAGATGCCACAACATATGAAGTAGGAGAAAACGGATCATGGGAAATGGGTGGCATAGATGACTTGGTCTTTGATCAAGATAATCACACCTTTGTGCGAAATGAAAATGAGTCATCGTACCAAGAAAACTTGCCATCTCTTTCCCGACAACGCACACCAGGTAACAATGCAAATGCTGCACCACATAGCAGGGCTCAAGGCAAAAGAAGTAGAGCTGATTATGAACAAAGTAGCAACTCAAAAGGGGTAGCTACTCAAGCTGAAGTTCTAGAAAACTTATCAACTGGCTTTGGTAAAATTGTCACCACTTTTGATACAATTTGTGGCATAATGGAGAAGAGAGAATCAAGAGACACTGAATGTTGGATTGCTATTCAGGAGACCCCAGGATTAACTGATGAGGCTAGCTTTTTTGCGCTTAGTTTTCTTAACACTAAAGCAAAGCAAGACATCTTCTTGAAGATGAGTCCGGACCAACGACGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

240

Amino Acids

26.17

Weight (kDa)

5.14

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 198 - 238 7.7e-13 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AccB7I CCANNNNNTGG 1 cut(s) 82
AccII CGCG 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 700
AciI CCGC 2 cut(s) 51, 53
AclWI GGATC 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 89, 691
AjnI CCWGG 2 cut(s) 388, 616
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 7 cut(s) 79, 100, 154, 446, 482, 491, 639
AluI AGCT 7 cut(s) 79, 100, 154, 446, 482, 491, 639
Alw26I GTCTC 2 cut(s) 576, 605
AlwI GGATC 1 cut(s) 274
Aor13HI TCCGGA 1 cut(s) 700
ApeKI GCWGC 1 cut(s) 407
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AseI ATTAAT 1 cut(s) 117
AspLEI GCGC 2 cut(s) 95, 649
AspS9I GGNCC 2 cut(s) 48, 703
AsuHPI GGTGA 2 cut(s) 236, 526
AsuNHI GCTAGC 1 cut(s) 635
AvaII GGWCC 2 cut(s) 48, 703
BanII GRGCYC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 199, 373
BciT130I CCWGG 2 cut(s) 390, 618
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 576, 605
BfaI CTAG 4 cut(s) 221, 500, 636, 718
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 1 cut(s) 408
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 390, 618
Bme18I GGWCC 2 cut(s) 48, 703
BmgT120I GGNCC 2 cut(s) 48, 703
BmrFI CCNGG 2 cut(s) 390, 618
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 226
BmtI GCTAGC 1 cut(s) 639
BmuI ACTGGG 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 411, 471
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 2 cut(s) 51, 616
BsaWI WCCGGW 1 cut(s) 700
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 205, 520
Bse3DI GCAATG 1 cut(s) 70
BseAI TCCGGA 1 cut(s) 700
BseBI CCWGG 2 cut(s) 390, 618
BseDI CCNNGG 2 cut(s) 51, 616
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 205, 520
BseXI GCAGC 1 cut(s) 394
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 701
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 576, 605
Bso31I GGTCTC 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 427
Bsp13I TCCGGA 1 cut(s) 700
Bsp143I GATC 2 cut(s) 266, 304
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 2 cut(s) 51, 53
BspEI TCCGGA 1 cut(s) 700
BspFNI CGCG 1 cut(s) 53
BspOI GCTAGC 1 cut(s) 639
BspPI GGATC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 2 cut(s) 205, 520
BssECI CCNNGG 2 cut(s) 51, 616
BssMI GATC 2 cut(s) 266, 304
Bst2UI CCWGG 2 cut(s) 390, 618
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 51, 563
BstAPI GCANNNNNTGC 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 2 cut(s) 96, 650
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 649
BstKTI GATC 2 cut(s) 269, 307
BstMAI GTCTC 2 cut(s) 576, 605
BstMBI GATC 2 cut(s) 266, 304
BstMWI GCNNNNNNNGC 2 cut(s) 407, 488
BstNI CCWGG 2 cut(s) 390, 618
BstSCI CCNGG 2 cut(s) 388, 616
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 637
CfoI GCGC 2 cut(s) 95, 649
Cfr13I GGNCC 2 cut(s) 48, 703
Cfr42I CCGCGG 1 cut(s) 54
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 1 cut(s) 349
CviAII CATG 2 cut(s) 82, 270
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 96, 650
DpnI GATC 2 cut(s) 268, 306
DpnII GATC 2 cut(s) 266, 304
Eam1104I CTCTTC 2 cut(s) 51, 563
EarI CTCTTC 2 cut(s) 51, 563
Eco24I GRGCYC 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 605
Eco47I GGWCC 2 cut(s) 48, 703
Eco57I CTGAAG 1 cut(s) 513
EcoRII CCWGG 2 cut(s) 388, 616
EcoT38I GRGCYC 1 cut(s) 427
FaeI CATG 2 cut(s) 85, 273
FaiI YATR 9 cut(s) 39, 83, 247, 249, 271, 287, 417, 453, 560
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 2 cut(s) 81, 269
FauNDI CATATG 1 cut(s) 247
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 4 cut(s) 221, 500, 636, 718
GlaI GCGC 2 cut(s) 94, 648
GluI GCNGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 96
HapII CCGG 1 cut(s) 701
HhaI GCGC 2 cut(s) 95, 649
Hin1II CATG 2 cut(s) 85, 273
Hin6I GCGC 2 cut(s) 93, 647
HinP1I GCGC 2 cut(s) 93, 647
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 8, 105, 341, 575, 697
HpaII CCGG 1 cut(s) 701
HphI GGTGA 2 cut(s) 236, 526
Hpy166II GTNNAC 1 cut(s) 26
Hpy188III TCNNGA 7 cut(s) 308, 375, 500, 579, 608, 688, 701
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 714
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 3 cut(s) 197, 401, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 488
HpyF3I CTNAG 2 cut(s) 96, 650
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 2 cut(s) 85, 273
HspAI GCGC 2 cut(s) 93, 647
Kpn2I TCCGGA 1 cut(s) 700
Ksp22I TGATCA 1 cut(s) 304
KspI CCGCGG 1 cut(s) 54
Kzo9I GATC 2 cut(s) 266, 304
LmnI GCTCC 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 1 cut(s) 226
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 4 cut(s) 221, 500, 636, 718
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 3 cut(s) 392, 532, 713
MalI GATC 2 cut(s) 268, 306
MboI GATC 2 cut(s) 266, 304
MboII GAAGA 4 cut(s) 68, 580, 676, 703
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 2 cut(s) 528, 549
MlyI GAGTC 2 cut(s) 350, 706
MmeI TCCRAC 1 cut(s) 575
MnlI CCTC 2 cut(s) 139, 625
MroI TCCGGA 1 cut(s) 700
MseI TTAA 4 cut(s) 117, 168, 623, 660
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 701
MspR9I CCNGG 2 cut(s) 390, 618
MvaI CCWGG 2 cut(s) 390, 618
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 407, 488
NdeI CATATG 1 cut(s) 247
NdeII GATC 2 cut(s) 266, 304
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 2 cut(s) 85, 273
NmuCI GTSAC 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 323
PfeI GAWTC 3 cut(s) 8, 105, 575
PflFI GACNNNGTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 2 cut(s) 349, 705
PpsI GAGTC 2 cut(s) 349, 705
PshBI ATTAAT 1 cut(s) 117
PsiI TTATAA 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 388, 616
PspGI CCWGG 2 cut(s) 388, 616
PspPI GGNCC 2 cut(s) 48, 703
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 323
SacII CCGCGG 1 cut(s) 54
SaqAI TTAA 4 cut(s) 117, 168, 623, 660
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 2 cut(s) 266, 304
Sau96I GGNCC 2 cut(s) 48, 703
SchI GAGTC 2 cut(s) 350, 706
ScrFI CCNGG 2 cut(s) 390, 618
SduI GDGCHC 1 cut(s) 427
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 1 cut(s) 226
Sfr303I CCGCGG 1 cut(s) 54
SgrBI CCGCGG 1 cut(s) 54
SinI GGWCC 2 cut(s) 48, 703
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 2 cut(s) 426, 486
SmoI CTYRAG 2 cut(s) 426, 486
Sse9I AATT 2 cut(s) 528, 549
SsiI CCGC 2 cut(s) 51, 53
SspMI CTAG 4 cut(s) 221, 500, 636, 718
StyD4I CCNGG 2 cut(s) 388, 616
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 715
TasI AATT 2 cut(s) 528, 549
TfiI GAWTC 3 cut(s) 8, 105, 575
Tru1I TTAA 4 cut(s) 117, 168, 623, 660
Tru9I TTAA 4 cut(s) 117, 168, 623, 660
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 3 cut(s) 264, 348, 468
TspGWI ACGGA 2 cut(s) 98, 279
TspRI CASTG 1 cut(s) 592
Tth111I GACNNNGTC 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 48, 703
VspI ATTAAT 1 cut(s) 117
XbaI TCTAGA 1 cut(s) 499
XspI CTAG 4 cut(s) 221, 500, 636, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.