FvH4_2g00551
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000329
Physical Location & Seq
Reverse (-)
592958 .. 593966
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00551.t1

Sequence Viewer

Length: 912 bp
ATGGGTGATTCACAACAGGATACCAAAAAAAAGATAGCTTATGAGCAGTGGACCAAGAAAGAGAGCGATTTATTGTTAGAACTCATGGTTGATGCTGCGGCTCAGGGATGGCGTGACAATAGTGGTGTTTTCGGCAAAACAACAGTGAAAGAGAGAATACTACCCGTTCTTAATTTAAAACTTGGATGTCATAAGACCTACAACAATTACCAAAGCCGGTTGAAATGGTTTAAAGGTTGCTGGTTATCTTATTCAACCCTTATGCGGTTCAGCTCTGGCTTTAGATATGACTATACTACTAAAAGGTTCACTGCTCCAGATGAAGTATGGGATGAGTACCTAAAGGCTCACCCAAAAGATGCCAACTTACGCTATGGGGTGACTCTTGATTATGAGGATTTGGAAATCGTTGTTGGGAATGGTGTTGTTGTTGGAAAAAACTCAATTGGGTTGGGTAGTGCTACTGATGCAAGGACATTAGGAGATGATGAAGGTAGAGATGTACGCATAGAGAACCTTGATTATAATGTTGAGAATGAGGTGTTTGTAGCACCAACTCAAAATGATCCATCATTTCACTCTACATCCCCTTTAAGGTTCCCTGAAGTTTATGAGGTTCCCAATCAAAGAAGAACCCGATCCAAGAGAAGTAGAAATGAGTATGAAGGAAGTTCTAGCTCAACTGGAAATACCCCTCAAAGTGGCATTAGGGAACAACTTGATAAACTAACGACCACTTTTGAAGGAGTTTATAGCCTATTAGAGAAAAGAGAAAGCTTATTAGAGAAAAGAGAAAGGGATAGAGCATATACAATTTGGGATGCTATCGAGGAGATCCCAAATTTGGATGAAGACATTCGTTTTAAGGCTTTTGACTTGCTTGACACTAAATCAAAAGGGATGGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

304

Amino Acids

34.83

Weight (kDa)

5.51

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 113 7e-15 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 272 - 299 2.8e-11 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AciI CCGC 2 cut(s) 98, 265
AclWI GGATC 3 cut(s) 560, 633, 829
AcsI RAATTY 1 cut(s) 841
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 2 cut(s) 338, 504
AfiI CCNNNNNNNGG 4 cut(s) 264, 594, 701, 844
AgsI TTSAA 3 cut(s) 223, 255, 743
AjuI GAANNNNNNNTTGG 2 cut(s) 396, 428
AluBI AGCT 4 cut(s) 38, 273, 678, 777
AluI AGCT 4 cut(s) 38, 273, 678, 777
AlwI GGATC 3 cut(s) 560, 633, 829
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 841
Asp700I GAANNNNTTC 1 cut(s) 855
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 17, 341, 391
AvaII GGWCC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 858
BbvI GCAGC 1 cut(s) 82
BccI CCATC 3 cut(s) 102, 577, 895
BciVI GTATCC 1 cut(s) 13
BfaI CTAG 1 cut(s) 675
BfuI GTATCC 1 cut(s) 13
BisI GCNGC 2 cut(s) 96, 99
BlsI GCNGC 2 cut(s) 97, 100
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 599, 618
BmsI GCATC 4 cut(s) 82, 349, 457, 811
BpiI GAAGAC 1 cut(s) 858
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 4 cut(s) 264, 594, 701, 844
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 688
BseGI GGATG 7 cut(s) 113, 191, 337, 584, 826, 853, 906
BseLI CCNNNNNNNGG 4 cut(s) 264, 594, 701, 844
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 688
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 217
BslI CCNNNNNNNGG 4 cut(s) 264, 594, 701, 844
Bsp143I GATC 3 cut(s) 565, 638, 834
BspACI CCGC 2 cut(s) 98, 265
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 599, 618
BspPI GGATC 3 cut(s) 560, 633, 829
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 1 cut(s) 688
BssAI RCCGGY 1 cut(s) 216
BssMI GATC 3 cut(s) 565, 638, 834
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 7 cut(s) 113, 191, 337, 584, 826, 853, 906
BstKTI GATC 3 cut(s) 568, 641, 837
BstMBI GATC 3 cut(s) 565, 638, 834
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
BsuI GTATCC 1 cut(s) 13
BtsCI GGATG 7 cut(s) 113, 191, 337, 584, 826, 853, 906
BtsI GCAGTG 2 cut(s) 53, 309
BtsIMutI CAGTG 3 cut(s) 53, 150, 309
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 337, 503
CviAII CATG 1 cut(s) 85
CviQI GTAC 2 cut(s) 337, 503
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 567, 640, 836
DpnII GATC 3 cut(s) 565, 638, 834
DraI TTTAAA 2 cut(s) 177, 232
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 624
FaeI CATG 1 cut(s) 88
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 96, 99
FokI GGATG 6 cut(s) 120, 198, 344, 571, 833, 860
Fsp4HI GCNGC 2 cut(s) 96, 99
FspBI CTAG 1 cut(s) 675
GluI GCNGC 2 cut(s) 96, 99
GsuI CTGGAG 1 cut(s) 300
HapII CCGG 1 cut(s) 217
Hin1II CATG 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 775
HinfI GANTC 2 cut(s) 8, 382
HpaII CCGG 1 cut(s) 217
HphI GGTGA 3 cut(s) 17, 341, 391
Hpy166II GTNNAC 2 cut(s) 51, 309
Hpy188III TCNNGA 2 cut(s) 317, 386
Hpy8I GTNNAC 2 cut(s) 51, 309
HpyAV CCTTC 3 cut(s) 485, 659, 737
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 3 cut(s) 565, 638, 834
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 2, 89, 226, 230, 261, 330, 615, 669
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 4 cut(s) 82, 349, 457, 811
MaeI CTAG 1 cut(s) 675
MaeIII GTNAC 2 cut(s) 113, 379
MalI GATC 3 cut(s) 567, 640, 836
MboI GATC 3 cut(s) 565, 638, 834
MboII GAAGA 2 cut(s) 642, 863
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 1 cut(s) 834
MluCI AATT 5 cut(s) 172, 205, 444, 813, 841
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 5 cut(s) 388, 532, 607, 705, 823
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 6 cut(s) 171, 176, 231, 593, 864, 910
MspI CCGG 1 cut(s) 217
MunI CAATTG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 467
NdeII GATC 3 cut(s) 565, 638, 834
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 599, 618
NmuCI GTSAC 2 cut(s) 113, 379
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 97, 100
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PsiI TTATAA 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 599, 618
PspPI GGNCC 1 cut(s) 51
PsuI RGATCY 1 cut(s) 834
RsaI GTAC 2 cut(s) 338, 504
RsaNI GTAC 2 cut(s) 337, 503
SaqAI TTAA 6 cut(s) 171, 176, 231, 593, 864, 910
SatI GCNGC 2 cut(s) 96, 99
Sau3AI GATC 3 cut(s) 565, 638, 834
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 376
SfaNI GCATC 4 cut(s) 82, 349, 457, 811
SinI GGWCC 1 cut(s) 51
Sse9I AATT 5 cut(s) 172, 205, 444, 813, 841
SsiI CCGC 2 cut(s) 98, 265
SspMI CTAG 1 cut(s) 675
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 828
TasI AATT 5 cut(s) 172, 205, 444, 813, 841
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 6 cut(s) 171, 176, 231, 593, 864, 910
Tru9I TTAA 6 cut(s) 171, 176, 231, 593, 864, 910
TscAI CASTG 3 cut(s) 53, 150, 316
TseFI GTSAC 2 cut(s) 113, 379
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 2 cut(s) 113, 379
TspDTI ATGAA 4 cut(s) 336, 504, 678, 864
TspRI CASTG 3 cut(s) 53, 150, 316
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 841
XcmI CCANNNNNNNNNTGG 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.