Rw5G032340
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000329
Physical Location & Seq
Reverse (-)
54638181 .. 54639249
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032340.1

Sequence Viewer

Length: 846 bp
ATGGTGATTCACAAGAAGATGCCAAAAAAGAGGGGGGGGGGGGGGGCCGGGGGGGGTTATGAGCAGTGGAGCAAGGAAGAGAGCAATTTATTGTTAGAGCTCATGCTTGATGCTGCCACTCGGGGATGGTGTGACAATAGTGGTATCTTTTCCAAGCAAATTACAGTGGAAGAAAAAATACTTCCCGTTCTTAATTTAAAACTTGGGTGTCATAAGACCTACAACAATTACCAAAGTCGGTTGAAGTGGTTTAAAAATCGATGGGCTTCTTATTCAGCCCTAATGCGATTCAGCTCTGGTTTTGGGTTTGACTCAACTACAAAGAGGTTCACTGCTTCAGATGAAGTATGGGAAGATTACCTAAAGGCTCACCTAAACGATACCAATTTACGCTATGGGATATTTCATGATTATGAGGACTTGGAGATTGCTATTGGGAATGGTGTTGTTGTTGGAAAAAACTCAATGGGGTTGGGTGGTGCTACCGATGCAAGAACATTAGGTGTTGGAGAAGATAGAGATATACGCATAGAAGACTTCGATTATGATGTAGATAGTGATGTGTTCGTAAGACCAAATTTGAATGATCGATCATTTCGCTCCACATCACCTCTAGGAACCCAAACCAAAAGAAATAGAACCGAGTATGAAGAAAACACCCCTCAAAGTGGCATTATGGAACAACTTAATAAAATTTTGACTACTTTTGAAGGAGTCTATAGCCTATTGGCGAAGAGAGAAAGAGCGCTTGAGTTGCTTGACACCCAAATAGAAAAAGATGGTTTCCTGAAGATGTCTCCTGAAGAACGAGCAAATTGGATATTCCACAAGATGCGAGAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

281

Amino Acids

32.17

Weight (kDa)

6.04

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 22 - 120 2.2e-15 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 249 - 277 2.6e-09 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 577, 693
AcuI CTGAAG 3 cut(s) 321, 809, 822
AfeI AGCGCT 1 cut(s) 747
AfiI CCNNNNNNNGG 1 cut(s) 668
AgsI TTSAA 3 cut(s) 244, 583, 710
AluBI AGCT 2 cut(s) 100, 294
AluI AGCT 2 cut(s) 100, 294
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 801
Ama87I CYCGRG 1 cut(s) 120
Aor51HI AGCGCT 1 cut(s) 747
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 577, 693
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 3 cut(s) 16, 362, 600
AvaI CYCGRG 1 cut(s) 120
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 162, 194
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 100
BccI CCATC 3 cut(s) 120, 255, 773
BcnI CCSGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 801
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 718
BfoI RGCGCY 1 cut(s) 749
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 46, 619
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 4 cut(s) 9, 100, 478, 822
BpiI GAAGAC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 49
Bsa29I ATCGAT 2 cut(s) 259, 589
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 668
BseCI ATCGAT 2 cut(s) 259, 589
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 668
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 47
BshVI ATCGAT 2 cut(s) 259, 589
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 668
BsmAI GTCTC 1 cut(s) 801
BsnI GGCC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 586, 590
BspANI GGCC 1 cut(s) 47
BspDI ATCGAT 2 cut(s) 259, 589
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 46, 619
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 586, 590
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 72, 728
BstF5I GGATG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 749
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 2 cut(s) 589, 593
BstMAI GTCTC 1 cut(s) 801
BstMBI GATC 2 cut(s) 586, 590
BstMWI GCNNNNNNNGC 2 cut(s) 488, 754
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 718
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 540
Bsu15I ATCGAT 2 cut(s) 259, 589
BsuRI GGCC 1 cut(s) 47
BsuTUI ATCGAT 2 cut(s) 259, 589
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 2 cut(s) 71, 330
BtsIMutI CAGTG 3 cut(s) 71, 171, 330
CciI TCATGA 1 cut(s) 406
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 1 cut(s) 45
ClaI ATCGAT 2 cut(s) 259, 589
CviAII CATG 2 cut(s) 103, 407
CviJI RGCY 7 cut(s) 47, 100, 266, 278, 294, 368, 723
CviKI_1 RGCY 7 cut(s) 47, 100, 266, 278, 294, 368, 723
DpnI GATC 2 cut(s) 588, 592
DpnII GATC 2 cut(s) 586, 590
DraI TTTAAA 2 cut(s) 198, 253
Eam1104I CTCTTC 2 cut(s) 72, 728
EarI CTCTTC 2 cut(s) 72, 728
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco47III AGCGCT 1 cut(s) 747
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 3 cut(s) 321, 809, 822
Eco88I CYCGRG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 2 cut(s) 106, 410
FatI CATG 2 cut(s) 102, 406
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 614
GlaI GCGC 1 cut(s) 747
GluI GCNGC 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 749
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 48
HhaI GCGC 1 cut(s) 748
Hin1II CATG 2 cut(s) 106, 410
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HinfI GANTC 4 cut(s) 7, 288, 311, 714
HpaII CCGG 1 cut(s) 48
HphI GGTGA 3 cut(s) 16, 362, 600
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 3 cut(s) 407, 787, 800
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 704
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 754
Hsp92II CATG 2 cut(s) 106, 410
HspAI GCGC 1 cut(s) 746
Kzo9I GATC 2 cut(s) 586, 590
LmnI GCTCC 2 cut(s) 69, 605
LpnPI CCDG 4 cut(s) 61, 282, 800, 813
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 4 cut(s) 9, 100, 478, 822
MaeI CTAG 1 cut(s) 614
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 588, 592
MboI GATC 2 cut(s) 586, 590
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 8 cut(s) 85, 159, 193, 226, 385, 577, 693, 814
MlyI GAGTC 2 cut(s) 305, 723
MmeI TCCRAC 2 cut(s) 433, 487
MnlI CCTC 5 cut(s) 24, 318, 409, 621, 672
MseI TTAA 4 cut(s) 192, 197, 252, 687
MslI CAYNNNNRTG 1 cut(s) 411
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 488, 754
NciI CCSGG 1 cut(s) 49
NdeII GATC 2 cut(s) 586, 590
NlaIII CATG 2 cut(s) 106, 410
NlaIV GGNNCC 2 cut(s) 46, 619
NmuCI GTSAC 1 cut(s) 131
PagI TCATGA 1 cut(s) 406
PfeI GAWTC 2 cut(s) 7, 288
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 2 cut(s) 305, 722
PpsI GAGTC 2 cut(s) 305, 722
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 46, 619
PspPI GGNCC 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 192, 197, 252, 687
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 586, 590
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 2 cut(s) 305, 723
ScrFI CCNGG 1 cut(s) 49
SduI GDGCHC 1 cut(s) 102
SetI ASST 8 cut(s) 102, 221, 296, 329, 363, 375, 505, 613
SfaNI GCATC 4 cut(s) 9, 100, 478, 822
SfcI CTRYAG 1 cut(s) 718
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 8 cut(s) 85, 159, 193, 226, 385, 577, 693, 814
SspMI CTAG 1 cut(s) 614
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 259, 540, 589
TasI AATT 8 cut(s) 85, 159, 193, 226, 385, 577, 693, 814
TfiI GAWTC 2 cut(s) 7, 288
Tru1I TTAA 4 cut(s) 192, 197, 252, 687
Tru9I TTAA 4 cut(s) 192, 197, 252, 687
TscAI CASTG 3 cut(s) 71, 171, 337
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 357, 395, 663
TspRI CASTG 3 cut(s) 71, 171, 337
XapI RAATTY 2 cut(s) 577, 693
XspI CTAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.