Rmu_sc0007863.1_g000005
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007863.1
OG0000329
Physical Location & Seq
Forward (+)
26268 .. 27314
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007863.1_g000005.1.cds

Sequence Viewer

Length: 810 bp
atggaagatgagaatcttgaactactttctcaaagtcaacaacgacaaagagcggaggctaatgcttggaggcttactattgctgaagctatgtgggaggatagaccgcgaaatgatgatgataatggaagtcaagagaataacaatgatactcaagacaatgagaatgagaataatgaggaacatatggatgacggggaacaagaaggttatgatgataatgaagacaccgacttgcgctatgggacatttgatgattatgaggacttggaaattgctattgggaatggtgtagcggttgggaaaaactcggccgggttgggtagtgttactgatgcaagaacattaggggttggtgaaggtagagaggcatgcatagaagactttgattatgatatagattgtgaagcatttgttggaccaaatcaaaataatccatcaactcatccaacatcacccctccaagcccctgaaattttggaggttccgaggcgaggaacaacccaaaataaaagaagtagaaccgagtatgaaggaaattctaactcaattgggggcacccctcaaagtggtgttatggagaagcttgataaactttactctggttttgaagtcatgattaacttactagagaaaagagagcgacaaaataaaatttgggatgctatcatggagatcccaaacttggatgaagctaccggtttcaaggctcttgagttgcttgataccaaaacaaaaaaagatggattcttgaatatgtctcctcaacagcgatcaaattggatattccacaagttaggaggactatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

269

Amino Acids

30.31

Weight (kDa)

4.29

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 557
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 1 cut(s) 109
AciI CCGC 3 cut(s) 53, 107, 296
AclWI GGATC 1 cut(s) 670
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 3 cut(s) 474, 538, 654
AcuI CTGAAG 1 cut(s) 105
AfiI CCNNNNNNNGG 3 cut(s) 494, 569, 685
AgeI ACCGGT 1 cut(s) 698
AgsI TTSAA 4 cut(s) 20, 611, 706, 754
AjuI GAANNNNNNNTTGG 4 cut(s) 264, 296, 399, 431
AluBI AGCT 3 cut(s) 89, 586, 695
AluI AGCT 3 cut(s) 89, 586, 695
Alw26I GTCTC 1 cut(s) 765
AlwI GGATC 1 cut(s) 670
AoxI GGCC 1 cut(s) 312
ApoI RAATTY 3 cut(s) 474, 538, 654
AsiGI ACCGGT 1 cut(s) 698
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 368, 447
AvaII GGWCC 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 557
BbsI GAAGAC 2 cut(s) 231, 387
BccI CCATC 2 cut(s) 445, 737
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 1 cut(s) 629
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 2 cut(s) 486, 559
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 325, 652
BpiI GAAGAC 2 cut(s) 231, 387
BpuEI CTTGAG 2 cut(s) 138, 734
BpuMI CCSGG 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 488
BsaWI WCCGGW 1 cut(s) 698
Bsc4I CCNNNNNNNGG 3 cut(s) 494, 569, 685
Bse118I RCCGGY 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 4 cut(s) 196, 445, 667, 694
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 3 cut(s) 494, 569, 685
BseRI GAGGAG 1 cut(s) 753
BseSI GKGCMC 1 cut(s) 560
BseX3I CGGCCG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 557
BshTI ACCGGT 1 cut(s) 698
BsiEI CGRYCG 1 cut(s) 315
BsiSI CCGG 2 cut(s) 315, 699
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 3 cut(s) 494, 569, 685
BsmAI GTCTC 1 cut(s) 765
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 2 cut(s) 675, 773
BspACI CCGC 3 cut(s) 53, 107, 296
BspANI GGCC 1 cut(s) 314
BspFNI CGCG 1 cut(s) 109
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 2 cut(s) 486, 559
BspPI GGATC 1 cut(s) 670
BspT107I GGYRCC 1 cut(s) 557
BsrBI CCGCTC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 698
BssAI RCCGGY 1 cut(s) 698
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 2 cut(s) 675, 773
BstC8I GCNNGC 1 cut(s) 373
BstF5I GGATG 4 cut(s) 196, 445, 667, 694
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 678, 776
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 2 cut(s) 675, 773
BstMCI CGRYCG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 560
BstUI CGCG 1 cut(s) 109
BstV2I GAAGAC 2 cut(s) 231, 387
BstX2I RGATCY 1 cut(s) 675
BstYI RGATCY 1 cut(s) 675
BstZI CGGCCG 1 cut(s) 312
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 4 cut(s) 196, 445, 667, 694
Cac8I GCNNGC 1 cut(s) 373
CciI TCATGA 1 cut(s) 615
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 1 cut(s) 419
CspAI ACCGGT 1 cut(s) 698
CviAII CATG 3 cut(s) 372, 616, 670
CviJI RGCY 8 cut(s) 59, 73, 89, 314, 467, 586, 695, 710
CviKI_1 RGCY 8 cut(s) 59, 73, 89, 314, 467, 586, 695, 710
DpnI GATC 2 cut(s) 677, 775
DpnII GATC 2 cut(s) 675, 773
EaeI YGGCCR 1 cut(s) 312
EagI CGGCCG 1 cut(s) 312
EclXI CGGCCG 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 419
Eco52I CGGCCG 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 377
FaeI CATG 3 cut(s) 375, 619, 673
FaqI GGGAC 1 cut(s) 259
FatI CATG 3 cut(s) 371, 615, 669
FauNDI CATATG 1 cut(s) 186
FokI GGATG 4 cut(s) 203, 432, 674, 701
FspBI CTAG 1 cut(s) 629
GlaI GCGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 314
HapII CCGG 2 cut(s) 315, 699
HhaI GCGC 1 cut(s) 240
Hin1II CATG 3 cut(s) 375, 619, 673
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 2 cut(s) 13, 747
HpaII CCGG 2 cut(s) 315, 699
HphI GGTGA 2 cut(s) 368, 447
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 489
Hpy188III TCNNGA 6 cut(s) 17, 134, 155, 616, 713, 751
Hpy8I GTNNAC 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 200, 353, 527
HpyCH4V TGCA 2 cut(s) 338, 375
Hsp92II CATG 3 cut(s) 375, 619, 673
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 675, 773
LpnPI CCDG 4 cut(s) 328, 483, 588, 712
LweI GCATC 2 cut(s) 325, 652
MaeI CTAG 1 cut(s) 629
MaeIII GTNAC 1 cut(s) 328
MalI GATC 2 cut(s) 677, 775
MbiI CCGCTC 1 cut(s) 53
MboI GATC 2 cut(s) 675, 773
MboII GAAGA 3 cut(s) 17, 236, 392
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 1 cut(s) 675
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 6 cut(s) 273, 474, 538, 549, 654, 778
MmeI TCCRAC 2 cut(s) 397, 473
Mph1103I ATGCAT 1 cut(s) 377
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 2 cut(s) 315, 699
MspR9I CCNGG 1 cut(s) 316
MunI CAATTG 1 cut(s) 549
MvnI CGCG 1 cut(s) 109
NciI CCSGG 1 cut(s) 316
NdeI CATATG 1 cut(s) 186
NdeII GATC 2 cut(s) 675, 773
NlaIII CATG 3 cut(s) 375, 619, 673
NlaIV GGNNCC 2 cut(s) 486, 559
NmeAIII GCCGAG 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 377
NspI RCATGY 1 cut(s) 375
PaeI GCATGC 1 cut(s) 375
PagI TCATGA 1 cut(s) 615
PfeI GAWTC 2 cut(s) 13, 747
PinAI ACCGGT 1 cut(s) 698
PspN4I GGNNCC 2 cut(s) 486, 559
PspPI GGNCC 1 cut(s) 419
PsuI RGATCY 1 cut(s) 675
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 1 cut(s) 621
Sau3AI GATC 2 cut(s) 675, 773
Sau96I GGNCC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 1 cut(s) 560
SetI ASST 6 cut(s) 91, 211, 364, 486, 588, 697
SfaNI GCATC 2 cut(s) 325, 652
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 153, 713
SmoI CTYRAG 2 cut(s) 153, 713
SphI GCATGC 1 cut(s) 375
Sse9I AATT 6 cut(s) 273, 474, 538, 549, 654, 778
SsiI CCGC 3 cut(s) 53, 107, 296
SspMI CTAG 1 cut(s) 629
StyD4I CCNGG 1 cut(s) 314
TasI AATT 6 cut(s) 273, 474, 538, 549, 654, 778
TfiI GAWTC 2 cut(s) 13, 747
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TspDTI ATGAA 3 cut(s) 237, 546, 705
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 3 cut(s) 474, 538, 654
XceI RCATGY 1 cut(s) 375
XspI CTAG 1 cut(s) 629
Zsp2I ATGCAT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.