Rmu_sc0017974.1_g000002
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017974.1
OG0000329
Physical Location & Seq
Reverse (-)
5127 .. 6092
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017974.1_g000002.1.cds

Sequence Viewer

Length: 780 bp
atggttgatgctgccactcggggatggcgtgacaatagtggtatcttttccaagcaaatagtggaagaaagaatacttcccgttcttaattcaaaacttggctctggttttgggtttgactcaactacaaagaggttcactgcttcagatgaagtatgggaaggttacctaaaggctcacccaaacgataccaatttacgctatgagatatttcatgattatgaagacttggagattgctattgggaatggtgttgctgttggaaaaaactcaatggggttgggtggtgccaccgatgcaagaacattaggtgttagagaagatagagatatacgcatagaagacttcgattatgatgtagatagtgatgtgttcgtaagaccaaatcagaatgatcgatcatttcgctccacatcacctctagggtcgcctgaaattttagaggttctcaagcaaggaagaacccaaaccaaaagaaatagaaccgagtatgaagaaaacacccctcaaagtggcattatggaacaacttaataaaatttcgactacttttgaagtagtctatagcctattggcgaagagagaaagagtattggagaaaagagaaagggagagagaatatacaacttgggatgttatcaaggagatcccaaacatggaggaaactattcgtttcaaggcgcttgagttgcttgacacccaaacaaaaaaagatggtttcctgaagatgtctcctgaagaacgagcaaattggatattccacaagatgcgagaactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

259

Amino Acids

29.99

Weight (kDa)

5.21

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AclWI GGATC 1 cut(s) 640
AcsI RAATTY 2 cut(s) 435, 537
AcuI CTGAAG 3 cut(s) 129, 743, 756
AfiI CCNNNNNNNGG 2 cut(s) 512, 655
AgsI TTSAA 3 cut(s) 93, 554, 676
Alw26I GTCTC 1 cut(s) 735
AlwI GGATC 1 cut(s) 640
Ama87I CYCGRG 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 2 cut(s) 435, 537
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 1 cut(s) 682
AsuHPI GGTGA 2 cut(s) 170, 408
AvaI CYCGRG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbsI GAAGAC 2 cut(s) 231, 348
BccI CCATC 2 cut(s) 18, 707
BcoDI GTCTC 1 cut(s) 735
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 562
BfoI RGCGCY 1 cut(s) 683
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 289
BmsI GCATC 2 cut(s) 286, 756
BpiI GAAGAC 2 cut(s) 231, 348
BpuEI CTTGAG 2 cut(s) 434, 704
Bsa29I ATCGAT 1 cut(s) 397
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 655
BseCI ATCGAT 1 cut(s) 397
BseGI GGATG 2 cut(s) 29, 637
BseLI CCNNNNNNNGG 2 cut(s) 512, 655
BshNI GGYRCC 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 512, 655
BsmAI GTCTC 1 cut(s) 735
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 3 cut(s) 394, 398, 645
BspDI ATCGAT 1 cut(s) 397
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 640
BspT107I GGYRCC 1 cut(s) 287
BssMI GATC 3 cut(s) 394, 398, 645
Bst6I CTCTTC 1 cut(s) 572
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 2 cut(s) 29, 637
BstH2I RGCGCY 1 cut(s) 683
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 3 cut(s) 397, 401, 648
BstMAI GTCTC 1 cut(s) 735
BstMBI GATC 3 cut(s) 394, 398, 645
BstMWI GCNNNNNNNGC 2 cut(s) 296, 688
BstPI GGTNACC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 562
BstV2I GAAGAC 2 cut(s) 231, 348
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
Bsu15I ATCGAT 1 cut(s) 397
BsuTUI ATCGAT 1 cut(s) 397
BtsCI GGATG 2 cut(s) 29, 637
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 682
ClaI ATCGAT 1 cut(s) 397
CviAII CATG 2 cut(s) 215, 655
CviJI RGCY 3 cut(s) 102, 176, 567
CviKI_1 RGCY 3 cut(s) 102, 176, 567
DpnI GATC 3 cut(s) 396, 400, 647
DpnII GATC 3 cut(s) 394, 398, 645
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco57I CTGAAG 3 cut(s) 129, 743, 756
Eco88I CYCGRG 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 164
FaeI CATG 2 cut(s) 218, 658
FatI CATG 2 cut(s) 214, 654
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 36, 644
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 681
GluI GCNGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 683
HhaI GCGC 1 cut(s) 682
Hin1II CATG 2 cut(s) 218, 658
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HinfI GANTC 1 cut(s) 119
HphI GGTGA 2 cut(s) 170, 408
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 148, 390
Hpy188III TCNNGA 3 cut(s) 215, 721, 734
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 688
Hsp92II CATG 2 cut(s) 218, 658
HspAI GCGC 1 cut(s) 680
Kzo9I GATC 3 cut(s) 394, 398, 645
LmnI GCTCC 1 cut(s) 413
LpnPI CCDG 4 cut(s) 90, 444, 734, 747
LweI GCATC 2 cut(s) 286, 756
MaeI CTAG 1 cut(s) 422
MaeIII GTNAC 2 cut(s) 29, 164
MalI GATC 3 cut(s) 396, 400, 647
MboI GATC 3 cut(s) 394, 398, 645
MboII GAAGA 9 cut(s) 77, 236, 332, 353, 471, 506, 589, 736, 749
MflI RGATCY 1 cut(s) 645
MluCI AATT 5 cut(s) 88, 193, 435, 537, 748
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 5 cut(s) 126, 429, 436, 516, 652
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 2 cut(s) 87, 531
MslI CAYNNNNRTG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 296, 688
NdeII GATC 3 cut(s) 394, 398, 645
NlaIII CATG 2 cut(s) 218, 658
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 29
PagI TCATGA 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 666
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 2 cut(s) 87, 531
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 394, 398, 645
SchI GAGTC 1 cut(s) 113
SetI ASST 6 cut(s) 137, 166, 171, 313, 421, 447
SfaNI GCATC 2 cut(s) 286, 756
SfcI CTRYAG 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 449, 683
SmoI CTYRAG 2 cut(s) 449, 683
Sse9I AATT 5 cut(s) 88, 193, 435, 537, 748
SspMI CTAG 1 cut(s) 422
TaqI TCGA 3 cut(s) 348, 397, 542
TasI AATT 5 cut(s) 88, 193, 435, 537, 748
Tru1I TTAA 2 cut(s) 87, 531
Tru9I TTAA 2 cut(s) 87, 531
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 165, 203, 237, 507
TspRI CASTG 1 cut(s) 145
XapI RAATTY 2 cut(s) 435, 537
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.