RLG00000030978
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000329
Physical Location & Seq
Forward (+)
1033251 .. 1034309
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030978

Sequence Viewer

Length: 816 bp
ATGGGACCTCCGCAACAAGTAAAGGGCAAAGGAGCAAAAGAAGAGGGAAAGGATGTGGGAAATTATGACAAATGGAGTAATGAAGAGAGCAATGAGTTACTACAAGTCTTAGTTGATGCTGCCAAACGTGGTTGGCGCGATCCTCAAAGTGGTTTGATAGACAAAAAACACTCCAGCTTTGGGTGGGACCCCATCATGAAGAGAATCACTGCTAGTGATGAAGTATGGGAAGATTACTTCAAGACTTTCATAGACTATGAGGATTTGAAAATTGCAGTTGGAAACGGAATTGCAACGGGAAAGTTTTCAATTAGCCTGGGCGATGATACTGATGCAACCACATACATGGTTGAGGAAAGTGAAAGTGGTGCTTTGAATGACTTGGTCTATAACAAAAATGCTGATGCATTCATACCAATAGGGGATGAATCATCATTCCAAAGTTATTCACCACCGCCATCATCCTTACCTTTTGAGGGCACGAATGTGGGAGTTCCTAATAACAATGTGGAAAAGAATACTGGAAGTAGTGCAACTGGAAAACGCAACAGGAATGAGTTTGAGAGAAATAATAGCTTGACTGATGATATTTCTGAAGCTGATGTTAGGAAAAGCATTGGTTCCATTGCCACCAATTTCAACAAAATGTATAGCCCAATGGAGAAAAGAGAATCAAGGGATACAGAATGCTGGAATGCTATTAAGGACACTCCAGGCTTGAATGATGAAGTACGTTACATGGCTCTTGAGTTGCTCAATACTAAAGCATTGAAGGATGTTTTTCTAGAAACGACCCCGGAGGAGCGATTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

272

Amino Acids

30.27

Weight (kDa)

4.66

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 230 - 270 6.8e-16 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 11, 455
AclWI GGATC 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 1 cut(s) 732
AfiI CCNNNNNNNGG 3 cut(s) 149, 180, 476
AgsI TTSAA 7 cut(s) 241, 268, 309, 376, 640, 721, 772
AjnI CCWGG 2 cut(s) 315, 712
AleI CACNNNNGTG 1 cut(s) 485
AluBI AGCT 3 cut(s) 177, 576, 599
AluI AGCT 3 cut(s) 177, 576, 599
AlwI GGATC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 5, 187
AsuC2I CCSGG 1 cut(s) 797
AsuHPI GGTGA 1 cut(s) 441
AvaII GGWCC 2 cut(s) 5, 187
BaeGI GKGCMC 1 cut(s) 482
BbvI GCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 200, 466
BciT130I CCWGG 2 cut(s) 317, 714
BciVI GTATCC 1 cut(s) 673
BcnI CCSGG 1 cut(s) 797
BfaI CTAG 2 cut(s) 213, 785
BfuI GTATCC 1 cut(s) 673
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 3 cut(s) 317, 714, 797
Bme18I GGWCC 2 cut(s) 5, 187
BmgT120I GGNCC 2 cut(s) 5, 187
BmiI GGNNCC 4 cut(s) 6, 188, 189, 622
BmrFI CCNGG 3 cut(s) 317, 714, 797
BmsI GCATC 3 cut(s) 106, 322, 394
BpmI CTGGAG 2 cut(s) 157, 696
BpuEI CTTGAG 1 cut(s) 767
BpuMI CCSGG 1 cut(s) 797
BsaJI CCNNGG 2 cut(s) 316, 795
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 180, 476
Bse1I ACTGG 2 cut(s) 526, 541
Bse3DI GCAATG 2 cut(s) 97, 624
BseBI CCWGG 2 cut(s) 317, 714
BseDI CCNNGG 2 cut(s) 316, 795
BseGI GGATG 4 cut(s) 58, 430, 461, 781
BseLI CCNNNNNNNGG 3 cut(s) 149, 180, 476
BseMI GCAATG 2 cut(s) 97, 624
BseNI ACTGG 2 cut(s) 526, 541
BseRI GAGGAG 1 cut(s) 815
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 797
BslFI GGGAC 2 cut(s) 18, 200
BslI CCNNNNNNNGG 3 cut(s) 149, 180, 476
BsmFI GGGAC 2 cut(s) 18, 200
BsmI GAATGC 3 cut(s) 407, 692, 700
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 2 cut(s) 11, 455
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 4 cut(s) 6, 188, 189, 622
BspPI GGATC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 97, 624
BsrI ACTGG 2 cut(s) 526, 541
BssECI CCNNGG 2 cut(s) 316, 795
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 317, 714
Bst6I CTCTTC 3 cut(s) 36, 78, 194
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 4 cut(s) 58, 430, 461, 781
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstNI CCWGG 2 cut(s) 317, 714
BstSCI CCNGG 3 cut(s) 315, 712, 795
BstSLI GKGCMC 1 cut(s) 482
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 346
BsuI GTATCC 1 cut(s) 673
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 4 cut(s) 58, 430, 461, 781
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
CciI TCATGA 1 cut(s) 195
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 5, 187
Csp6I GTAC 1 cut(s) 731
CviAII CATG 3 cut(s) 196, 346, 739
CviJI RGCY 7 cut(s) 177, 315, 576, 599, 654, 717, 743
CviKI_1 RGCY 7 cut(s) 177, 315, 576, 599, 654, 717, 743
CviQI GTAC 1 cut(s) 731
DdeI CTNAG 1 cut(s) 109
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 36, 78, 194
EarI CTCTTC 3 cut(s) 36, 78, 194
Eco47I GGWCC 2 cut(s) 5, 187
Eco57I CTGAAG 1 cut(s) 615
EcoO109I RGGNCCY 2 cut(s) 5, 187
EcoRII CCWGG 2 cut(s) 315, 712
EcoT22I ATGCAT 1 cut(s) 409
FaeI CATG 3 cut(s) 199, 349, 742
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FaqI GGGAC 2 cut(s) 18, 200
FatI CATG 3 cut(s) 195, 345, 738
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 4 cut(s) 65, 437, 448, 788
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 213, 785
GlaI GCGC 1 cut(s) 137
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 2 cut(s) 157, 696
HapII CCGG 1 cut(s) 797
HhaI GCGC 1 cut(s) 138
Hin1II CATG 3 cut(s) 199, 349, 742
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 3 cut(s) 204, 428, 671
HpaII CCGG 1 cut(s) 797
HphI GGTGA 1 cut(s) 441
Hpy188I TCNGA 1 cut(s) 595
Hpy188III TCNNGA 4 cut(s) 196, 241, 746, 785
HpyAV CCTTC 1 cut(s) 766
HpyCH4IV ACGT 2 cut(s) 127, 733
HpyCH4V TGCA 5 cut(s) 275, 293, 335, 407, 533
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 2 cut(s) 127, 733
Hsp92II CATG 3 cut(s) 199, 349, 742
HspAI GCGC 1 cut(s) 136
KflI GGGWCCC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 32, 802
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 3 cut(s) 106, 322, 394
MaeI CTAG 2 cut(s) 213, 785
MaeII ACGT 2 cut(s) 127, 733
MaeIII GTNAC 2 cut(s) 96, 734
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 4 cut(s) 53, 95, 211, 242
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 5 cut(s) 61, 270, 288, 309, 634
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 7 cut(s) 18, 37, 153, 253, 346, 469, 793
Mph1103I ATGCAT 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 304
MseI TTAA 2 cut(s) 702, 810
MslI CAYNNNNRTG 2 cut(s) 344, 485
MspI CCGG 1 cut(s) 797
MspR9I CCNGG 3 cut(s) 317, 714, 797
Mva1269I GAATGC 3 cut(s) 407, 692, 700
MvaI CCWGG 2 cut(s) 317, 714
MvnI CGCG 1 cut(s) 138
NciI CCSGG 1 cut(s) 797
NdeII GATC 1 cut(s) 139
NlaIII CATG 3 cut(s) 199, 349, 742
NlaIV GGNNCC 4 cut(s) 6, 188, 189, 622
NsiI ATGCAT 1 cut(s) 409
OliI CACNNNNGTG 1 cut(s) 485
PagI TCATGA 1 cut(s) 195
PctI GAATGC 3 cut(s) 407, 692, 700
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 3 cut(s) 204, 428, 671
PflFI GACNNNGTC 1 cut(s) 383
PkrI GCNGC 1 cut(s) 121
PpuMI RGGWCCY 2 cut(s) 5, 187
Psp5II RGGWCCY 2 cut(s) 5, 187
Psp6I CCWGG 2 cut(s) 315, 712
PspGI CCWGG 2 cut(s) 315, 712
PspN4I GGNNCC 4 cut(s) 6, 188, 189, 622
PspPI GGNCC 2 cut(s) 5, 187
PspPPI RGGWCCY 2 cut(s) 5, 187
PsyI GACNNNGTC 1 cut(s) 383
RsaI GTAC 1 cut(s) 732
RsaNI GTAC 1 cut(s) 731
RseI CAYNNNNRTG 2 cut(s) 344, 485
SaqAI TTAA 2 cut(s) 702, 810
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 2 cut(s) 5, 187
ScrFI CCNGG 3 cut(s) 317, 714, 797
SduI GDGCHC 1 cut(s) 482
SetI ASST 7 cut(s) 10, 130, 179, 472, 578, 601, 736
SfaNI GCATC 3 cut(s) 106, 322, 394
SinI GGWCC 2 cut(s) 5, 187
SmiMI CAYNNNNRTG 2 cut(s) 344, 485
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 5 cut(s) 61, 270, 288, 309, 634
SsiI CCGC 2 cut(s) 11, 455
SspMI CTAG 2 cut(s) 213, 785
StyD4I CCNGG 3 cut(s) 315, 712, 795
TaiI ACGT 2 cut(s) 130, 736
TasI AATT 5 cut(s) 61, 270, 288, 309, 634
TfiI GAWTC 3 cut(s) 204, 428, 671
Tru1I TTAA 2 cut(s) 702, 810
Tru9I TTAA 2 cut(s) 702, 810
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 7 cut(s) 96, 212, 234, 238, 400, 441, 741
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 5, 187
XbaI TCTAGA 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 2 cut(s) 213, 785
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.