Rroxscaffold_4G00318490
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000329
Physical Location & Seq
Reverse (-)
44653421 .. 44666928
13508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318490.1

Sequence Viewer

Length: 708 bp
ATGAAAGATTCTGATCGTTTGTTTCCTCAACTTGCTTTCTTCGAGCATCTCTCTTCTCAACAGCATCAAAAACCATCGATCTCTCATCAAAACACCATTGAGAATTTGCAGCCGACCATCTTCTCCAACCATTCCAAGGCCTCTGCATCACTACTTTCAACAATTGGTAATTGCAATTCAAATCCTCTTTGTATTGTCATTGCTATTCTCCCTCGCAGTTCCCGCCAAGTCCCGTCGCTCAATCTCTCGCACGTCTTTGGCTACTCGGATCTACTTAGGTCTTTGGAAGCAAATCAAAGCCGCTCTAGCAGAACTCATAGCTCTCTCGGCTATAGTGTTTCTATCATCCCAAGTCCCACTATCCAATCACATCCAATGCATGTGCATTTTCGGACAGAAACTTTTCCGGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAATTGCAACTGAAATGGGCTCAATTAGTCTAGGTAATGATACAAATGCCATAACATATGCAGTGGAAGAAAACAAACATTGGGGAATTGATGGATTAGCTGAGGTTCTAGAAAATTTATCAAGTGGCATTGGTAAAATTGTCACAAGCTTTGATAAAATTTGTGACTTTATGGAGAAGAGAAATTCAAGAGAGAGTGACATTTTGGATGCTATGAAGGAAACCCTAGGATTAACTGATGATCGAGGCTTGTTTTATGGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

235

Amino Acids

25.94

Weight (kDa)

5.77

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 2 cut(s) 223, 301
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 4 cut(s) 103, 556, 600, 625
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 4 cut(s) 159, 180, 424, 630
AjiI CACGTC 1 cut(s) 253
AluBI AGCT 3 cut(s) 321, 542, 591
AluI AGCT 3 cut(s) 321, 542, 591
AlwI GGATC 1 cut(s) 276
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 4 cut(s) 103, 556, 600, 625
Asp700I GAANNNNTTC 1 cut(s) 402
AspA2I CCTAGG 1 cut(s) 667
AvrII CCTAGG 1 cut(s) 667
BanII GRGCYC 1 cut(s) 464
BbvCI CCTCAGC 1 cut(s) 543
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 82, 125, 527
BfaI CTAG 4 cut(s) 306, 473, 551, 668
BfmI CTRYAG 1 cut(s) 331
BisI GCNGC 2 cut(s) 110, 301
BlnI CCTAGG 1 cut(s) 667
BlsI GCNGC 2 cut(s) 111, 302
BmgBI CACGTC 1 cut(s) 253
BmsI GCATC 4 cut(s) 55, 73, 155, 640
BplI GAGNNNNNCTC 2 cut(s) 35, 67
Bpu10I CCTNAGC 1 cut(s) 543
Bsa29I ATCGAT 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 135, 667
BsaWI WCCGGW 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 135, 667
BseGI GGATG 3 cut(s) 345, 370, 655
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 534
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 77
BsiSI CCGG 1 cut(s) 407
BslFI GGGAC 2 cut(s) 215, 339
BslI CCNNNNNNNGG 1 cut(s) 136
BsmFI GGGAC 2 cut(s) 215, 339
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 464
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 4 cut(s) 13, 78, 268, 682
BspACI CCGC 2 cut(s) 223, 301
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 535
BspDI ATCGAT 1 cut(s) 77
BspEI TCCGGA 1 cut(s) 406
BspPI GGATC 1 cut(s) 276
BsrBI CCGCTC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 135, 667
BssMI GATC 4 cut(s) 13, 78, 268, 682
BssT1I CCWWGG 2 cut(s) 135, 667
Bst6I CTCTTC 2 cut(s) 58, 614
BstDEI CTNAG 2 cut(s) 275, 543
BstF5I GGATG 3 cut(s) 345, 370, 655
BstKTI GATC 4 cut(s) 16, 81, 271, 685
BstMBI GATC 4 cut(s) 13, 78, 268, 682
BstMWI GCNNNNNNNGC 3 cut(s) 222, 306, 327
BstNSI RCATGY 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 77
BsuRI GGCC 1 cut(s) 140
BsuTUI ATCGAT 1 cut(s) 77
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 3 cut(s) 345, 370, 655
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 510
ClaI ATCGAT 1 cut(s) 77
CviAII CATG 1 cut(s) 380
DdeI CTNAG 2 cut(s) 275, 543
DpnI GATC 4 cut(s) 15, 80, 270, 684
DpnII GATC 4 cut(s) 13, 78, 268, 682
Eam1104I CTCTTC 2 cut(s) 58, 614
EarI CTCTTC 2 cut(s) 58, 614
Eco130I CCWWGG 2 cut(s) 135, 667
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 135, 667
EcoT22I ATGCAT 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 464
ErhI CCWWGG 2 cut(s) 135, 667
FaeI CATG 1 cut(s) 383
FaqI GGGAC 2 cut(s) 215, 339
FatI CATG 1 cut(s) 379
FauI CCCGC 1 cut(s) 230
FauNDI CATATG 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 110, 301
FokI GGATG 3 cut(s) 332, 357, 662
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 2 cut(s) 110, 301
FspBI CTAG 4 cut(s) 306, 473, 551, 668
GluI GCNGC 2 cut(s) 110, 301
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 407
Hin1II CATG 1 cut(s) 383
HindIII AAGCTT 1 cut(s) 589
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 407
Hpy188I TCNGA 3 cut(s) 13, 268, 393
Hpy188III TCNNGA 4 cut(s) 407, 551, 630, 705
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 652
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 8 cut(s) 109, 146, 174, 379, 385, 431, 449, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 306, 327
HpyF3I CTNAG 2 cut(s) 275, 543
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 1 cut(s) 383
Kpn2I TCCGGA 1 cut(s) 406
Kzo9I GATC 4 cut(s) 13, 78, 268, 682
LpnPI CCDG 1 cut(s) 420
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 4 cut(s) 55, 73, 155, 640
MaeI CTAG 4 cut(s) 306, 473, 551, 668
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 583, 605, 638
MalI GATC 4 cut(s) 15, 80, 270, 684
MbiI CCGCTC 1 cut(s) 303
MboI GATC 4 cut(s) 13, 78, 268, 682
MboII GAAGA 5 cut(s) 31, 45, 112, 521, 631
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 150, 415
MnlI CCTC 7 cut(s) 36, 151, 195, 222, 409, 538, 680
Mph1103I ATGCAT 1 cut(s) 381
MroI TCCGGA 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 1 cut(s) 674
MspI CCGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 222, 306, 327
NdeI CATATG 1 cut(s) 499
NdeII GATC 4 cut(s) 13, 78, 268, 682
NlaIII CATG 1 cut(s) 383
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 3 cut(s) 583, 605, 638
NsiI ATGCAT 1 cut(s) 381
NspI RCATGY 1 cut(s) 383
PceI AGGCCT 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 111, 302
PsuI RGATCY 1 cut(s) 268
SaqAI TTAA 1 cut(s) 674
SatI GCNGC 2 cut(s) 110, 301
Sau3AI GATC 4 cut(s) 13, 78, 268, 682
SduI GDGCHC 1 cut(s) 464
SetI ASST 7 cut(s) 255, 281, 323, 478, 544, 549, 593
SfaNI GCATC 4 cut(s) 55, 73, 155, 640
SfcI CTRYAG 1 cut(s) 331
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 2 cut(s) 223, 301
SspMI CTAG 4 cut(s) 306, 473, 551, 668
StuI AGGCCT 1 cut(s) 140
StyI CCWWGG 2 cut(s) 135, 667
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 42, 77, 685
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 674
Tru9I TTAA 1 cut(s) 674
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 3 cut(s) 583, 605, 638
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 3 cut(s) 583, 605, 638
TspDTI ATGAA 2 cut(s) 17, 671
TspRI CASTG 1 cut(s) 510
XapI RAATTY 4 cut(s) 103, 556, 600, 625
XbaI TCTAGA 1 cut(s) 550
XceI RCATGY 1 cut(s) 383
XmaJI CCTAGG 1 cut(s) 667
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 4 cut(s) 306, 473, 551, 668
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.