RLG00000035597
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000329
Physical Location & Seq
Forward (+)
69211981 .. 69212945
965 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035597

Sequence Viewer

Length: 780 bp
ATGGTTGATGCCGCCGTTAGGGGATGGCGTGACAATAGTGGCATGTTAAGTAAGCAAACAGTGGAAGAAAGAATACTTCCTGTTCTTAATGCAAAACTTGGGTGTCACAAGACCTACAAAAACTACCAAAGCAGGCTTAGATGGTTTAAAGGTCGATGGAACTCTTACTCTACCCTTACGCCTTTTAGCTCTGGTTTTGGATTTGATTTAACTACAAAGAGGTTTACTGCTTCTAATGAAGTATGGGAGGGATACCTTAATGCTCACCCAAAGGACACTGACTTGCGCTATGGGACATTTGATGATTATGAGGACTTGGAAATTGCTATTGAGAATGGTGTAGCGGTTGGGAAAAACTCGGTCTGGTTGGGTAGTGTTACTGACGCAAGAACATTAGGTATTGGTGAAGGTAGAGAGGCATGCATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCAAATCAAAATAATCCATCAACTCATCCAACATCACCCCTCCAATCCCCTGAAATTTTGGAGGTTCCGAGTGGTGTTATGGAGAAGCTTGATAAACTTTACTCTGGTTTTGAAGTAATGATTAACTTACTAGAGAAAAGAGAGCGACAAAGTAAAATTTGGGATGCTATCATGGAGATCCCAAACTTGGATGAAGCTACCGGTTTCAAGGCTCTTGAGTTGCTTGATACCAAAACAAAAAAAGATGGATTCTTGAATATGTCTCCTCAACAGCGATCAAATTGGATATTCCACAAGTTGGGAGGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

260

Amino Acids

29.36

Weight (kDa)

5.16

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 85 4.6e-10 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 209 - 255 1.5e-22 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 766
AciI CCGC 2 cut(s) 12, 344
AclWI GGATC 1 cut(s) 640
AcsI RAATTY 2 cut(s) 522, 624
AfiI CCNNNNNNNGG 3 cut(s) 18, 655, 766
AgeI ACCGGT 1 cut(s) 668
AgsI TTSAA 3 cut(s) 581, 676, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 3 cut(s) 189, 556, 665
AluI AGCT 3 cut(s) 189, 556, 665
Alw26I GTCTC 1 cut(s) 735
AlwI GGATC 1 cut(s) 640
ApoI RAATTY 2 cut(s) 522, 624
AsiGI ACCGGT 1 cut(s) 668
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 3 cut(s) 257, 416, 495
AvaII GGWCC 1 cut(s) 467
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbsI GAAGAC 1 cut(s) 435
BccI CCATC 5 cut(s) 18, 135, 150, 493, 707
BciVI GTATCC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 735
BfaI CTAG 1 cut(s) 599
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 1 cut(s) 534
BmsI GCATC 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 704
BsaWI WCCGGW 1 cut(s) 668
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 655, 766
Bse118I RCCGGY 1 cut(s) 668
BseGI GGATG 4 cut(s) 29, 493, 637, 664
BseLI CCNNNNNNNGG 3 cut(s) 18, 655, 766
BseRI GAGGAG 1 cut(s) 723
BshTI ACCGGT 1 cut(s) 668
BsiSI CCGG 1 cut(s) 669
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 3 cut(s) 18, 655, 766
BsmAI GTCTC 1 cut(s) 735
BsmFI GGGAC 1 cut(s) 307
Bsp143I GATC 2 cut(s) 645, 743
BspACI CCGC 2 cut(s) 12, 344
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 1 cut(s) 640
BsrFI RCCGGY 1 cut(s) 668
BssAI RCCGGY 1 cut(s) 668
BssMI GATC 2 cut(s) 645, 743
Bst4CI ACNGT 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 134, 421
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 4 cut(s) 29, 493, 637, 664
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 2 cut(s) 648, 746
BstMAI GTCTC 1 cut(s) 735
BstMBI GATC 2 cut(s) 645, 743
BstNSI RCATGY 2 cut(s) 46, 423
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuI GTATCC 1 cut(s) 245
BtsCI GGATG 4 cut(s) 29, 493, 637, 664
BtsIMutI CAGTG 2 cut(s) 66, 276
Cac8I GCNNGC 2 cut(s) 134, 421
CfoI GCGC 1 cut(s) 288
Cfr10I RCCGGY 1 cut(s) 668
Cfr13I GGNCC 1 cut(s) 467
CseI GACGC 1 cut(s) 392
CspAI ACCGGT 1 cut(s) 668
CviAII CATG 3 cut(s) 43, 420, 640
CviJI RGCY 5 cut(s) 136, 189, 556, 665, 680
CviKI_1 RGCY 5 cut(s) 136, 189, 556, 665, 680
DdeI CTNAG 1 cut(s) 137
DpnI GATC 2 cut(s) 647, 745
DpnII GATC 2 cut(s) 645, 743
DraI TTTAAA 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 467
EcoT22I ATGCAT 1 cut(s) 425
FaeI CATG 3 cut(s) 46, 423, 643
FaqI GGGAC 1 cut(s) 307
FatI CATG 3 cut(s) 42, 419, 639
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 4 cut(s) 36, 480, 644, 671
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 599
GlaI GCGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 12
HapII CCGG 1 cut(s) 669
HgaI GACGC 1 cut(s) 392
HhaI GCGC 1 cut(s) 288
Hin1II CATG 3 cut(s) 46, 423, 643
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 1 cut(s) 717
HpaII CCGG 1 cut(s) 669
HphI GGTGA 3 cut(s) 257, 416, 495
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 537
Hpy188III TCNNGA 2 cut(s) 683, 721
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 92, 423
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 3 cut(s) 46, 423, 643
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 645, 743
LpnPI CCDG 7 cut(s) 93, 118, 177, 349, 531, 558, 682
LweI GCATC 1 cut(s) 622
MaeI CTAG 1 cut(s) 599
MaeIII GTNAC 3 cut(s) 29, 104, 376
MalI GATC 2 cut(s) 647, 745
MboI GATC 2 cut(s) 645, 743
MboII GAAGA 2 cut(s) 77, 440
MflI RGATCY 1 cut(s) 645
MluCI AATT 4 cut(s) 321, 522, 624, 748
MmeI TCCRAC 2 cut(s) 445, 521
MnlI CCTC 8 cut(s) 213, 241, 304, 409, 518, 523, 744, 764
Mph1103I ATGCAT 1 cut(s) 425
MseI TTAA 6 cut(s) 47, 87, 147, 209, 258, 591
MspI CCGG 1 cut(s) 669
NdeII GATC 2 cut(s) 645, 743
NlaIII CATG 3 cut(s) 46, 423, 643
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 2 cut(s) 29, 104
NsiI ATGCAT 1 cut(s) 425
NspI RCATGY 2 cut(s) 46, 423
PaeI GCATGC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 717
PflMI CCANNNNNTGG 1 cut(s) 766
PinAI ACCGGT 1 cut(s) 668
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 1 cut(s) 467
PsuI RGATCY 1 cut(s) 645
SaqAI TTAA 6 cut(s) 47, 87, 147, 209, 258, 591
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 645, 743
Sau96I GGNCC 1 cut(s) 467
SfaNI GCATC 1 cut(s) 622
SinI GGWCC 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SphI GCATGC 1 cut(s) 423
Sse9I AATT 4 cut(s) 321, 522, 624, 748
SsiI CCGC 2 cut(s) 12, 344
SspMI CTAG 1 cut(s) 599
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 154
TaqII GACCGA 1 cut(s) 349
TasI AATT 4 cut(s) 321, 522, 624, 748
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 717
Tru1I TTAA 6 cut(s) 47, 87, 147, 209, 258, 591
Tru9I TTAA 6 cut(s) 47, 87, 147, 209, 258, 591
TscAI CASTG 2 cut(s) 66, 283
TseFI GTSAC 2 cut(s) 29, 104
Tsp45I GTSAC 2 cut(s) 29, 104
TspDTI ATGAA 2 cut(s) 252, 675
TspRI CASTG 2 cut(s) 66, 283
Van91I CCANNNNNTGG 1 cut(s) 766
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 2 cut(s) 522, 624
XceI RCATGY 2 cut(s) 46, 423
XspI CTAG 1 cut(s) 599
Zsp2I ATGCAT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.