RchiOBHm_Chr7g0220391
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000329
Physical Location & Seq
Reverse (-)
39280534 .. 39281197
664 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19729

Sequence Viewer

Length: 582 bp
ATGTATTCTGAGCTTATGTGTCATAGCTCCGGCTTTAGGTGGGACCCCATCATGAAGAGAATCACTGCTAGTGATGAAGTATGGGAAGATTACTTCAAGGCACACCAAAAAAATAGAAGCCTTCGCAACCAGACTTTCATAGACTATGAGGATTTGAAAATTGCAGTGGGAAACAGAATTGCAACAGGAAAGTTTTCAATTAGCCTGGGCGATGATACTGATGCAACCACATACATGGTTGAGGAAAGTGAAAGTGGTGCTTTGAATGACTTGGTCTACAACAAAAATTCTGATGCATTCATACCAGCAGGGGATGAATCATCATTCCAAGGTTATTCACCACCGCCATCATTCTTACCTTTTGAGGGCACGAATGTTGGAGTTCTTAATAACAATGTGAAAACAAATACTAGAAGTAGTGCAACTGGAAAACGCAACAGGAATGAGTTTGAGAGAAATAATAGCTTGACTGATGATATTTCTGAAGCTGATGTTAGGAAAAGCATTGGTTCCATTGCCACCAATTTCAACAAAATGTATAGCCTAATGGAGAAAAGAGAATCAAGGGATACAGAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

193

Amino Acids

21.82

Weight (kDa)

4.96

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AciI CCGC 1 cut(s) 344
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 504
AfiI CCNNNNNNNGG 2 cut(s) 36, 365
AgsI TTSAA 5 cut(s) 97, 157, 198, 265, 529
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 4 cut(s) 13, 27, 465, 488
AluI AGCT 4 cut(s) 13, 27, 465, 488
ApoI RAATTY 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 330
AvaII GGWCC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 371
BccI CCATC 2 cut(s) 56, 355
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 1 cut(s) 562
BfaI CTAG 3 cut(s) 69, 411, 580
BfuI GTATCC 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 3 cut(s) 44, 45, 511
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 211, 283
BsaJI CCNNGG 2 cut(s) 205, 328
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 365
Bse1I ACTGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 513
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 205, 328
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 36, 365
BseMI GCAATG 1 cut(s) 513
BseNI ACTGG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 36, 365
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 2 cut(s) 296, 581
Bsp1286I GDGCHC 1 cut(s) 371
BspACI CCGC 1 cut(s) 344
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 44, 45, 511
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 205, 328
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 319
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 235
BsuI GTATCC 1 cut(s) 562
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 2 cut(s) 63, 171
BtsIMutI CAGTG 2 cut(s) 63, 171
CciI TCATGA 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 43
CviAII CATG 2 cut(s) 52, 235
CviJI RGCY 8 cut(s) 13, 27, 33, 120, 204, 465, 488, 543
CviKI_1 RGCY 8 cut(s) 13, 27, 33, 120, 204, 465, 488, 543
DdeI CTNAG 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 504
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 2 cut(s) 55, 238
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 51, 234
FblI GTMKAC 1 cut(s) 276
FokI GGATG 1 cut(s) 326
FspBI CTAG 3 cut(s) 69, 411, 580
HapII CCGG 1 cut(s) 30
Hin1II CATG 2 cut(s) 55, 238
HinfI GANTC 3 cut(s) 60, 317, 560
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 3 cut(s) 10, 292, 484
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 131
HpyCH4V TGCA 5 cut(s) 164, 182, 224, 296, 422
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 2 cut(s) 55, 238
KflI GGGWCCC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 9 cut(s) 43, 143, 171, 191, 218, 294, 318, 411, 424
LweI GCATC 2 cut(s) 211, 283
MaeI CTAG 3 cut(s) 69, 411, 580
MboII GAAGA 2 cut(s) 67, 98
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 5 cut(s) 159, 177, 198, 286, 523
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 3 cut(s) 142, 235, 358
Mph1103I ATGCAT 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 2 cut(s) 296, 581
MvaI CCWGG 1 cut(s) 206
NlaIII CATG 2 cut(s) 55, 238
NlaIV GGNNCC 3 cut(s) 44, 45, 511
NsiI ATGCAT 1 cut(s) 298
PagI TCATGA 1 cut(s) 51
PctI GAATGC 2 cut(s) 296, 581
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 3 cut(s) 60, 317, 560
PflFI GACNNNGTC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 44, 45, 511
PspPI GGNCC 1 cut(s) 43
PspPPI RGGWCCY 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 387
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 371
SetI ASST 7 cut(s) 15, 29, 41, 334, 361, 467, 490
SfaNI GCATC 2 cut(s) 211, 283
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 5 cut(s) 159, 177, 198, 286, 523
SsiI CCGC 1 cut(s) 344
SspMI CTAG 3 cut(s) 69, 411, 580
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 328
TasI AATT 5 cut(s) 159, 177, 198, 286, 523
TfiI GAWTC 3 cut(s) 60, 317, 560
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 2 cut(s) 70, 171
TspDTI ATGAA 5 cut(s) 68, 90, 127, 289, 330
TspRI CASTG 2 cut(s) 70, 171
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 3 cut(s) 69, 411, 580
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.