Rw3G020950
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000329
Physical Location & Seq
Forward (+)
25043328 .. 25044362
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020950.1

Sequence Viewer

Length: 876 bp
ATGGGTGATTCACAACAAGATGCTAAAAAAAGGGGCAATTTATTGTTAGAGCTCATGGTTGATGCTGCCACTCGGGGATGGCGTGACAATAGTGGTATCTTTTCCAAGCAAATAGTGGAAGAAAGAATACTTCCCGTTCTTAATTCAAAACTTGGGTGTCATAAGACCTACAACAATTACCAAAGTCGGTTGAAGTGCTCTGGTTTTGGGTTTGACTCAACTACAAAGAGGTTCACTGCTTCAGATGAAGTATGGGAAGATTACCTAAAGGCTCACCCAAACGATACCAATTTACGCTATGGGATATTTCATGATTATGAAGACTTGGAGATTGCTATTGGGAATGGTGTTGCTGTTGGAAAAAACTCAATGGGGTTGGGTGGTGCCACCGATGCAAGAACATTAGGTGTTGGAGAAGATAGAGATATACGTATAGAAGACTTCGATTATGATGTAGATAGTGATGTGTTCGTAAGACCAAATCAGAATGATCGATCATTTCGCTCCACATCACCTCTAGGGTCGCCTGAAATTTTAGAGGTTCCCAAGCAAGGAAGAACCCAAACCAAAAGAAATAGAACCGAGTATGAAGAAAACACCCCTCAAAGTGGCATTATGGAACAACTTAATAAAATTTCGACTACTTTTGAAGGAGTCTATAGCCTATTGGCGAAGAGAGAAAGAGTATTGGAGAAAAGAGAAAGGGAGAGAGAATATACAACTTGGGATGCTATCAAGGAGATCCCAAACATGGAAGAAGCTATTCGTTTCAAGGCGCTTGAGTTGCTTGACACCCAAACAAAAAAAGATGGTTTCCTGAAGATGTCTCCTGAAGAACGAGCAAATTGGATATTCCACAAGATGCGAGAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

291

Amino Acids

33.49

Weight (kDa)

5.5

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 12 - 88 6.9e-07 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 242 - 287 6.9e-24 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AclWI GGATC 1 cut(s) 736
AcsI RAATTY 2 cut(s) 531, 633
AcuI CTGAAG 3 cut(s) 225, 839, 852
AfiI CCNNNNNNNGG 3 cut(s) 551, 608, 751
AgsI TTSAA 4 cut(s) 147, 193, 650, 772
AluBI AGCT 2 cut(s) 52, 761
AluI AGCT 2 cut(s) 52, 761
Alw21I GWGCWC 2 cut(s) 54, 200
Alw26I GTCTC 1 cut(s) 831
AlwI GGATC 1 cut(s) 736
Ama87I CYCGRG 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 2 cut(s) 531, 633
Asp700I GAANNNNTTC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 778
AsuHPI GGTGA 3 cut(s) 17, 266, 504
AvaI CYCGRG 1 cut(s) 72
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 54
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BbsI GAAGAC 2 cut(s) 327, 444
Bbv12I GWGCWC 2 cut(s) 54, 200
BbvI GCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 72, 803
BcoDI GTCTC 1 cut(s) 831
BfaI CTAG 1 cut(s) 518
BfmI CTRYAG 1 cut(s) 658
BfoI RGCGCY 1 cut(s) 779
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 72
BmiI GGNNCC 2 cut(s) 385, 543
BmsI GCATC 5 cut(s) 10, 52, 382, 718, 852
BpiI GAAGAC 2 cut(s) 327, 444
BpuEI CTTGAG 1 cut(s) 800
Bsa29I ATCGAT 1 cut(s) 493
BsaAI YACGTR 1 cut(s) 431
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 608, 751
BseCI ATCGAT 1 cut(s) 493
BseGI GGATG 2 cut(s) 83, 733
BseLI CCNNNNNNNGG 3 cut(s) 551, 608, 751
BseXI GCAGC 1 cut(s) 52
BshNI GGYRCC 1 cut(s) 383
BshVI ATCGAT 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 54, 200
BsiHKCI CYCGRG 1 cut(s) 72
BslI CCNNNNNNNGG 3 cut(s) 551, 608, 751
BsmAI GTCTC 1 cut(s) 831
BsoBI CYCGRG 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 54, 200
Bsp143I GATC 3 cut(s) 490, 494, 741
BspDI ATCGAT 1 cut(s) 493
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 385, 543
BspPI GGATC 1 cut(s) 736
BspT107I GGYRCC 1 cut(s) 383
BssMI GATC 3 cut(s) 490, 494, 741
Bst6I CTCTTC 1 cut(s) 668
BstBAI YACGTR 1 cut(s) 431
BstF5I GGATG 2 cut(s) 83, 733
BstH2I RGCGCY 1 cut(s) 779
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 3 cut(s) 493, 497, 744
BstMAI GTCTC 1 cut(s) 831
BstMBI GATC 3 cut(s) 490, 494, 741
BstMWI GCNNNNNNNGC 2 cut(s) 392, 784
BstSFI CTRYAG 1 cut(s) 658
BstSNI TACGTA 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 2 cut(s) 327, 444
BstX2I RGATCY 1 cut(s) 741
BstYI RGATCY 1 cut(s) 741
Bsu15I ATCGAT 1 cut(s) 493
BsuTUI ATCGAT 1 cut(s) 493
BtsCI GGATG 2 cut(s) 83, 733
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
CciI TCATGA 1 cut(s) 310
CfoI GCGC 1 cut(s) 778
ClaI ATCGAT 1 cut(s) 493
CviAII CATG 3 cut(s) 55, 311, 751
CviJI RGCY 4 cut(s) 52, 272, 663, 761
CviKI_1 RGCY 4 cut(s) 52, 272, 663, 761
DpnI GATC 3 cut(s) 492, 496, 743
DpnII GATC 3 cut(s) 490, 494, 741
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
Ecl136II GAGCTC 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 3 cut(s) 225, 839, 852
Eco88I CYCGRG 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 3 cut(s) 58, 314, 754
FatI CATG 3 cut(s) 54, 310, 750
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 2 cut(s) 90, 740
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 518
GlaI GCGC 1 cut(s) 777
GluI GCNGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 779
HhaI GCGC 1 cut(s) 778
Hin1II CATG 3 cut(s) 58, 314, 754
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HinfI GANTC 3 cut(s) 8, 215, 654
HphI GGTGA 3 cut(s) 17, 266, 504
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 244, 486
Hpy188III TCNNGA 3 cut(s) 311, 817, 830
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 1 cut(s) 644
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 1 cut(s) 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 784
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 3 cut(s) 58, 314, 754
HspAI GCGC 1 cut(s) 776
Kzo9I GATC 3 cut(s) 490, 494, 741
LmnI GCTCC 1 cut(s) 509
LpnPI CCDG 4 cut(s) 186, 540, 830, 843
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 5 cut(s) 10, 52, 382, 718, 852
MaeI CTAG 1 cut(s) 518
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 1 cut(s) 83
MalI GATC 3 cut(s) 492, 496, 743
MboI GATC 3 cut(s) 490, 494, 741
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 2 cut(s) 54, 200
MluCI AATT 7 cut(s) 37, 142, 175, 289, 531, 633, 844
MlyI GAGTC 2 cut(s) 209, 663
MmeI TCCRAC 2 cut(s) 337, 391
MnlI CCTC 4 cut(s) 222, 525, 532, 612
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 2 cut(s) 141, 627
MslI CAYNNNNRTG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 392, 784
NdeII GATC 3 cut(s) 490, 494, 741
NlaIII CATG 3 cut(s) 58, 314, 754
NlaIV GGNNCC 2 cut(s) 385, 543
NmuCI GTSAC 1 cut(s) 83
PagI TCATGA 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 2 cut(s) 209, 662
PpsI GAGTC 2 cut(s) 209, 662
Ppu21I YACGTR 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 385, 543
PsuI RGATCY 1 cut(s) 741
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 141, 627
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 490, 494, 741
SchI GAGTC 2 cut(s) 209, 663
SduI GDGCHC 2 cut(s) 54, 200
SetI ASST 9 cut(s) 54, 170, 233, 267, 409, 433, 517, 543, 763
SfaNI GCATC 5 cut(s) 10, 52, 382, 718, 852
SfcI CTRYAG 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
SnaBI TACGTA 1 cut(s) 431
Sse9I AATT 7 cut(s) 37, 142, 175, 289, 531, 633, 844
SspMI CTAG 1 cut(s) 518
SstI GAGCTC 1 cut(s) 54
TaiI ACGT 1 cut(s) 433
TaqI TCGA 3 cut(s) 444, 493, 638
TasI AATT 7 cut(s) 37, 142, 175, 289, 531, 633, 844
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 141, 627
Tru9I TTAA 2 cut(s) 141, 627
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 4 cut(s) 261, 299, 333, 603
TspRI CASTG 1 cut(s) 241
XapI RAATTY 2 cut(s) 531, 633
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.