Rmu_sc0011325.1_g000005
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011325.1
OG0000329
Physical Location & Seq
Reverse (-)
26957 .. 29195
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011325.1_g000005.1.cds

Sequence Viewer

Length: 1377 bp
atggttgatccacaacaaaatgagaaaaaaaatgggaattatgagcagtggaccaaggaagagagtgataccttattagaactaatggttgatgccgccgttaggggatggcgtgacaatagtggcatcttaagtaagcaaacagtggaagaaagaatacttcctgttcttaatgcaaaacttgggtgtcacaagacatacaaaaactaccaaagcagggttagatggtttaaaggtcgatggaactcttactctacccttatgcgttttagctctagttttggatttgattcaactacaaagaggtttactgcttctaatgaagtatgggaggaaaaccttaaggacaccgacttgcgctatgggacatttgatgattatgaggacctggaaattgctattgggaatggtgtaacggttgggaaaaactcggtcaggttgggtagtgttactgatgcaagaacattaggcgttggtgaaggtagagaggcatgcatagaagactttgattatgatatagattgtgaagcatttgttggaccaaatcaaaataatccctcaactcatccaacgtcacccctccaatcccttgaaattttggaggtttcgaggcgaggaacaaccaaaaataaaagaagcagaaccgattatgaaggaaattctaactcaattgggggcacccctcaaagtggcgttatggagaagcttgataaactttactctggttttgaagtaatgattaatttactagagaaaagagagcaacaaagtaaaatttgggatgctatcatggagatcccaaacttggatgaagctaccggtttcaaggctcttgagttgcttgataccaaaacaaaaaaaagattgattcttgaatatgtctcctcaacagcaatcaaattggatattccacatgttgggaggactacaaattgtgacttgctatgttatgatgtcttatgccacaatgatcgatatggtaatgttcgggaaaggtttggtcgttcacattttgctactagtcaaaacttcaacaaaactttgaaggccttgaacactatagcaccacttatgatgatcaaacctggatctgcagtgccctctaaaataagggaaagcacaaggttttacccctactttaaggattgtattggtgcaattgatggcacccatattccagcgatggtaaaaggtcgcgaagtaagcagttatcgtaatcgtcatggaattcagtctcaaaatgttttggcagcttgcaactttgatttgcaattcatatatgtgctaagtgggtgggaaggttcggcacatgattcaaaattgttaaatgatgccttattaaggagaaatggacttgaagttcctcaaggtaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

458

Amino Acids

51.82

Weight (kDa)

6.49

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 677, 1166
AccB7I CCANNNNNTGG 1 cut(s) 917
AccII CGCG 1 cut(s) 1197
AciI CCGC 1 cut(s) 96
AclWI GGATC 3 cut(s) 2, 790, 1096
AcsI RAATTY 4 cut(s) 594, 658, 774, 1227
AfiI CCNNNNNNNGG 6 cut(s) 102, 217, 689, 805, 917, 1341
AflII CTTAAG 2 cut(s) 130, 341
AflIII ACRYGT 1 cut(s) 913
AgeI ACCGGT 1 cut(s) 818
AhlI ACTAGT 1 cut(s) 1019
AjnI CCWGG 2 cut(s) 387, 1084
AjuI GAANNNNNNNTTGG 4 cut(s) 384, 416, 519, 551
AloI GAACNNNNNNTCC 2 cut(s) 1344, 1376
AluBI AGCT 4 cut(s) 273, 706, 815, 1253
AluI AGCT 4 cut(s) 273, 706, 815, 1253
Alw26I GTCTC 2 cut(s) 886, 1239
AlwI GGATC 3 cut(s) 2, 790, 1096
AoxI GGCC 1 cut(s) 1047
ApeKI GCWGC 1 cut(s) 1250
ApoI RAATTY 4 cut(s) 594, 658, 774, 1227
AseI ATTAAT 1 cut(s) 741
AsiGI ACCGGT 1 cut(s) 818
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 3 cut(s) 51, 385, 539
AsuHPI GGTGA 2 cut(s) 488, 567
AvaII GGWCC 3 cut(s) 51, 385, 539
BaeGI GKGCMC 2 cut(s) 680, 1101
BanI GGYRCC 2 cut(s) 677, 1166
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BbsI GAAGAC 1 cut(s) 507
BbvI GCAGC 1 cut(s) 1262
BccI CCATC 5 cut(s) 102, 219, 234, 1157, 1177
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 389, 1086
BclI TGATCA 1 cut(s) 1077
BcoDI GTCTC 2 cut(s) 886, 1239
BcuI ACTAGT 1 cut(s) 1019
BfaI CTAG 3 cut(s) 276, 749, 1020
BfmI CTRYAG 2 cut(s) 1059, 1092
BfrI CTTAAG 2 cut(s) 130, 341
BisI GCNGC 2 cut(s) 96, 1251
BlsI GCNGC 2 cut(s) 97, 1252
Bme1390I CCNGG 2 cut(s) 389, 1086
Bme18I GGWCC 3 cut(s) 51, 385, 539
BmgT120I GGNCC 3 cut(s) 51, 385, 539
BmiI GGNNCC 2 cut(s) 679, 1168
BmrFI CCNGG 2 cut(s) 389, 1086
BmsI GCATC 5 cut(s) 82, 135, 445, 772, 1321
BpiI GAAGAC 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 854, 1350
Bsa29I ATCGAT 1 cut(s) 973
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 818
Bsc4I CCNNNNNNNGG 6 cut(s) 102, 217, 689, 805, 917, 1341
Bse118I RCCGGY 1 cut(s) 818
BseBI CCWGG 2 cut(s) 389, 1086
BseCI ATCGAT 1 cut(s) 973
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 4 cut(s) 113, 565, 787, 814
BseLI CCNNNNNNNGG 6 cut(s) 102, 217, 689, 805, 917, 1341
BseRI GAGGAG 1 cut(s) 874
BseSI GKGCMC 2 cut(s) 680, 1101
BseXI GCAGC 1 cut(s) 1262
Bsh1236I CGCG 1 cut(s) 1197
BshFI GGCC 1 cut(s) 1049
BshNI GGYRCC 2 cut(s) 677, 1166
BshTI ACCGGT 1 cut(s) 818
BshVI ATCGAT 1 cut(s) 973
BsiSI CCGG 1 cut(s) 819
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 6 cut(s) 102, 217, 689, 805, 917, 1341
BsmAI GTCTC 2 cut(s) 886, 1239
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 1 cut(s) 1049
Bsp1286I GDGCHC 2 cut(s) 680, 1101
Bsp143I GATC 5 cut(s) 7, 795, 970, 1077, 1088
Bsp68I TCGCGA 1 cut(s) 1197
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 1049
BspDI ATCGAT 1 cut(s) 973
BspFNI CGCG 1 cut(s) 1197
BspLI GGNNCC 2 cut(s) 679, 1168
BspMAI CTGCAG 1 cut(s) 1096
BspPI GGATC 3 cut(s) 2, 790, 1096
BspT107I GGYRCC 2 cut(s) 677, 1166
BspTI CTTAAG 2 cut(s) 130, 341
BsrFI RCCGGY 1 cut(s) 818
BssAI RCCGGY 1 cut(s) 818
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 5 cut(s) 7, 795, 970, 1077, 1088
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 2 cut(s) 389, 1086
Bst4CI ACNGT 2 cut(s) 145, 418
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 2 cut(s) 130, 341
BstC8I GCNNGC 2 cut(s) 493, 1255
BstDEI CTNAG 1 cut(s) 1286
BstENI CCTNNNNNAGG 1 cut(s) 1339
BstF5I GGATG 4 cut(s) 113, 565, 787, 814
BstFNI CGCG 1 cut(s) 1197
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 5 cut(s) 10, 798, 973, 1080, 1091
BstMAI GTCTC 2 cut(s) 886, 1239
BstMBI GATC 5 cut(s) 7, 795, 970, 1077, 1088
BstMWI GCNNNNNNNGC 1 cut(s) 1203
BstNI CCWGG 2 cut(s) 389, 1086
BstNSI RCATGY 2 cut(s) 495, 917
BstSCI CCNGG 2 cut(s) 387, 1084
BstSFI CTRYAG 2 cut(s) 1059, 1092
BstSLI GKGCMC 2 cut(s) 680, 1101
BstUI CGCG 1 cut(s) 1197
BstV1I GCAGC 1 cut(s) 1262
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 2 cut(s) 795, 1088
BstYI RGATCY 2 cut(s) 795, 1088
Bsu15I ATCGAT 1 cut(s) 973
BsuRI GGCC 1 cut(s) 1049
BsuTUI ATCGAT 1 cut(s) 973
BtgZI GCGATG 1 cut(s) 1196
BtsCI GGATG 4 cut(s) 113, 565, 787, 814
BtsI GCAGTG 2 cut(s) 53, 1101
BtsIMutI CAGTG 3 cut(s) 53, 150, 1101
BtuMI TCGCGA 1 cut(s) 1197
Cac8I GCNNGC 2 cut(s) 493, 1255
CfoI GCGC 1 cut(s) 360
Cfr10I RCCGGY 1 cut(s) 818
Cfr13I GGNCC 3 cut(s) 51, 385, 539
ClaI ATCGAT 1 cut(s) 973
CspAI ACCGGT 1 cut(s) 818
CviAII CATG 5 cut(s) 492, 790, 914, 1223, 1310
CviJI RGCY 6 cut(s) 273, 706, 815, 830, 1049, 1253
CviKI_1 RGCY 6 cut(s) 273, 706, 815, 830, 1049, 1253
DdeI CTNAG 1 cut(s) 1286
DpnI GATC 5 cut(s) 9, 797, 972, 1079, 1090
DpnII GATC 5 cut(s) 7, 795, 970, 1077, 1088
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 1049
Eco47I GGWCC 3 cut(s) 51, 385, 539
EcoNI CCTNNNNNAGG 1 cut(s) 1339
EcoO109I RGGNCCY 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 1227
EcoRII CCWGG 2 cut(s) 387, 1084
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 495, 793, 917, 1226, 1313
FaqI GGGAC 1 cut(s) 379
FatI CATG 5 cut(s) 491, 789, 913, 1222, 1309
FbaI TGATCA 1 cut(s) 1077
Fnu4HI GCNGC 2 cut(s) 96, 1251
FokI GGATG 4 cut(s) 120, 552, 794, 821
Fsp4HI GCNGC 2 cut(s) 96, 1251
FspBI CTAG 3 cut(s) 276, 749, 1020
GlaI GCGC 1 cut(s) 359
GluI GCNGC 2 cut(s) 96, 1251
HaeIII GGCC 1 cut(s) 1049
HapII CCGG 1 cut(s) 819
HhaI GCGC 1 cut(s) 360
Hin1II CATG 5 cut(s) 495, 793, 917, 1226, 1313
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 3 cut(s) 290, 868, 1313
HpaII CCGG 1 cut(s) 819
HphI GGTGA 2 cut(s) 488, 567
Hpy166II GTNNAC 3 cut(s) 51, 309, 1007
Hpy188III TCNNGA 4 cut(s) 833, 872, 989, 1196
Hpy8I GTNNAC 3 cut(s) 51, 309, 1007
HpyAV CCTTC 4 cut(s) 473, 647, 1039, 1292
HpyCH4III ACNGT 2 cut(s) 145, 418
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 7 cut(s) 176, 458, 495, 1094, 1157, 1257, 1270
HpyF10VI GCNNNNNNNGC 1 cut(s) 1203
HpyF3I CTNAG 1 cut(s) 1286
HpySE526I ACGT 1 cut(s) 572
Hsp92II CATG 5 cut(s) 495, 793, 917, 1226, 1313
HspAI GCGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 1077
Kzo9I GATC 5 cut(s) 7, 795, 970, 1077, 1088
Lsp1109I GCAGC 1 cut(s) 1262
LweI GCATC 5 cut(s) 82, 135, 445, 772, 1321
MaeI CTAG 3 cut(s) 276, 749, 1020
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 6 cut(s) 113, 188, 412, 448, 573, 935
MalI GATC 5 cut(s) 9, 797, 972, 1079, 1090
MboI GATC 5 cut(s) 7, 795, 970, 1077, 1088
MboII GAAGA 3 cut(s) 71, 161, 512
MfeI CAATTG 2 cut(s) 669, 1158
MflI RGATCY 2 cut(s) 795, 1088
MhlI GDGCHC 2 cut(s) 680, 1101
MmeI TCCRAC 2 cut(s) 517, 593
Mph1103I ATGCAT 1 cut(s) 497
MseI TTAA 9 cut(s) 131, 171, 231, 342, 741, 1140, 1325, 1340, 1375
MslI CAYNNNNRTG 1 cut(s) 1280
MspCI CTTAAG 2 cut(s) 130, 341
MspI CCGG 1 cut(s) 819
MspR9I CCNGG 2 cut(s) 389, 1086
MunI CAATTG 2 cut(s) 669, 1158
MvaI CCWGG 2 cut(s) 389, 1086
MvnI CGCG 1 cut(s) 1197
MwoI GCNNNNNNNGC 1 cut(s) 1203
NdeII GATC 5 cut(s) 7, 795, 970, 1077, 1088
NlaIII CATG 5 cut(s) 495, 793, 917, 1226, 1313
NlaIV GGNNCC 2 cut(s) 679, 1168
NmuCI GTSAC 4 cut(s) 113, 188, 573, 935
NruI TCGCGA 1 cut(s) 1197
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 2 cut(s) 495, 917
PaeI GCATGC 1 cut(s) 495
PceI AGGCCT 1 cut(s) 1049
PciI ACATGT 1 cut(s) 913
PfeI GAWTC 3 cut(s) 290, 868, 1313
PflMI CCANNNNNTGG 1 cut(s) 917
PinAI ACCGGT 1 cut(s) 818
PkrI GCNGC 2 cut(s) 97, 1252
PpuMI RGGWCCY 1 cut(s) 385
PscI ACATGT 1 cut(s) 913
PshBI ATTAAT 1 cut(s) 741
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 387, 1084
PspGI CCWGG 2 cut(s) 387, 1084
PspN4I GGNNCC 2 cut(s) 679, 1168
PspPI GGNCC 3 cut(s) 51, 385, 539
PspPPI RGGWCCY 1 cut(s) 385
PstI CTGCAG 1 cut(s) 1096
PsuI RGATCY 2 cut(s) 795, 1088
RruI TCGCGA 1 cut(s) 1197
RseI CAYNNNNRTG 1 cut(s) 1280
SaqAI TTAA 9 cut(s) 131, 171, 231, 342, 741, 1140, 1325, 1340, 1375
SatI GCNGC 2 cut(s) 96, 1251
Sau3AI GATC 5 cut(s) 7, 795, 970, 1077, 1088
Sau96I GGNCC 3 cut(s) 51, 385, 539
ScrFI CCNGG 2 cut(s) 389, 1086
SduI GDGCHC 2 cut(s) 680, 1101
SfaNI GCATC 5 cut(s) 82, 135, 445, 772, 1321
SfcI CTRYAG 2 cut(s) 1059, 1092
SinI GGWCC 3 cut(s) 51, 385, 539
SmiMI CAYNNNNRTG 1 cut(s) 1280
SmlI CTYRAG 4 cut(s) 130, 341, 833, 1365
SmoI CTYRAG 4 cut(s) 130, 341, 833, 1365
SpeI ACTAGT 1 cut(s) 1019
SphI GCATGC 1 cut(s) 495
SseBI AGGCCT 1 cut(s) 1049
SsiI CCGC 1 cut(s) 96
SspMI CTAG 3 cut(s) 276, 749, 1020
StuI AGGCCT 1 cut(s) 1049
StyD4I CCNGG 2 cut(s) 387, 1084
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 145, 418
TaiI ACGT 1 cut(s) 575
TaqI TCGA 3 cut(s) 238, 608, 973
TaqII GACCGA 1 cut(s) 421
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 3 cut(s) 290, 868, 1313
Tru1I TTAA 9 cut(s) 131, 171, 231, 342, 741, 1140, 1325, 1340, 1375
Tru9I TTAA 9 cut(s) 131, 171, 231, 342, 741, 1140, 1325, 1340, 1375
TscAI CASTG 3 cut(s) 53, 150, 1101
TseFI GTSAC 4 cut(s) 113, 188, 573, 935
TseI GCWGC 1 cut(s) 1250
Tsp45I GTSAC 4 cut(s) 113, 188, 573, 935
TspDTI ATGAA 4 cut(s) 336, 666, 825, 1264
TspRI CASTG 3 cut(s) 53, 150, 1101
Van91I CCANNNNNTGG 1 cut(s) 917
Vha464I CTTAAG 2 cut(s) 130, 341
VpaK11BI GGWCC 3 cut(s) 51, 385, 539
VspI ATTAAT 1 cut(s) 741
XagI CCTNNNNNAGG 1 cut(s) 1339
XapI RAATTY 4 cut(s) 594, 658, 774, 1227
XceI RCATGY 2 cut(s) 495, 917
XspI CTAG 3 cut(s) 276, 749, 1020
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.