Rmu_sc0012624.1_g000004
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012624.1
OG0000329
Physical Location & Seq
Reverse (-)
8322 .. 10227
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012624.1_g000004.1.cds

Sequence Viewer

Length: 774 bp
atgcgattcagctctggttttgggtttgactcaactacaaagaggttcactgcttcatatgaagtatgggaagattacctaaaggctcatccaaacgataccaatttacgctatgagatatttcatgattatgtggacttggagattgctattgggaatggtgttattgttggaaaaaactcaatggggttgggtggtgctaccgatgcaagaacattaggtgttggagaagatagagatatacgcatagaagacttcgattatgatgtagatagtgatgtgttcgtaagaccaaatcagaatgatcgatcatttagctccacatcacctctagggtcgcctgaaattttagaggattgcattggtgctattgatggaacccacattccagccatggtaaaaggtcgagaagtaagcagctatcgtaaccgtcatggaaaatattttctcgtggattgtggatttgctaatcgacgccaatttttagctccactacgaggtgtccgatatcatctgaaagattttggtggtcaaggtcgccaccccagaaatgcaagtgagttgtttaatcttcaccatgcatcattgaggaatgtgattgaaaggatatttggtatctttaaatcacggttcacaattttcaaaatcgcacctcccttcccatttgagacacaagcggagttagtgttagcttgtgccggactacataactttcttctcaaagaatgtcgctccaatgaatttcccgttgaaccagaagatgatcaatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

257

Amino Acids

29.09

Weight (kDa)

5.73

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 677
AcsI RAATTY 2 cut(s) 345, 740
AcyI GRCGYC 1 cut(s) 475
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 3 cut(s) 602, 643, 752
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AloI GAACNNNNNNTCC 2 cut(s) 370, 402
AluBI AGCT 5 cut(s) 12, 318, 420, 488, 692
AluI AGCT 5 cut(s) 12, 318, 420, 488, 692
Alw26I GTCTC 1 cut(s) 662
ApeKI GCWGC 1 cut(s) 417
ApoI RAATTY 2 cut(s) 345, 740
AsuHPI GGTGA 2 cut(s) 318, 566
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 429
BccI CCATC 1 cut(s) 368
BclI TGATCA 1 cut(s) 763
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 1 cut(s) 332
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 379
BmsI GCATC 2 cut(s) 196, 590
BpiI GAAGAC 1 cut(s) 258
Bsa29I ATCGAT 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 475
BsaJI CCNNGG 1 cut(s) 393
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 1 cut(s) 497
BseCI ATCGAT 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 497
BseXI GCAGC 1 cut(s) 429
BshVI ATCGAT 1 cut(s) 307
BsiSI CCGG 1 cut(s) 699
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 662
Bsp143I GATC 3 cut(s) 304, 308, 763
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 1 cut(s) 677
BspDI ATCGAT 1 cut(s) 307
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 3 cut(s) 304, 308, 763
BssNI GRCGYC 1 cut(s) 475
BssSI CACGAG 1 cut(s) 449
BssT1I CCWWGG 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 431, 630
BstACI GRCGYC 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 771
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 3 cut(s) 307, 311, 766
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 3 cut(s) 304, 308, 763
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 429
BstV2I GAAGAC 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 307
BsuTUI ATCGAT 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
CciI TCATGA 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 307
CseI GACGC 1 cut(s) 483
CviAII CATG 4 cut(s) 125, 394, 434, 578
CviJI RGCY 7 cut(s) 12, 86, 318, 392, 420, 488, 692
CviKI_1 RGCY 7 cut(s) 12, 86, 318, 392, 420, 488, 692
DdeI CTNAG 1 cut(s) 771
DpnI GATC 3 cut(s) 306, 310, 765
DpnII GATC 3 cut(s) 304, 308, 763
DraI TTTAAA 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 393
Eco32I GATATC 1 cut(s) 509
EcoRV GATATC 1 cut(s) 509
EcoT14I CCWWGG 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 4 cut(s) 128, 397, 437, 581
FatI CATG 4 cut(s) 124, 393, 433, 577
FauNDI CATATG 1 cut(s) 58
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 1 cut(s) 418
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 418
FspBI CTAG 1 cut(s) 332
GluI GCNGC 1 cut(s) 418
HapII CCGG 1 cut(s) 699
HgaI GACGC 1 cut(s) 483
Hin1I GRCGYC 1 cut(s) 475
Hin1II CATG 4 cut(s) 128, 397, 437, 581
HinfI GANTC 2 cut(s) 6, 29
HpaII CCGG 1 cut(s) 699
HphI GGTGA 2 cut(s) 318, 566
Hpy166II GTNNAC 3 cut(s) 48, 136, 633
Hpy188I TCNGA 3 cut(s) 300, 506, 516
Hpy188III TCNNGA 2 cut(s) 125, 407
Hpy8I GTNNAC 3 cut(s) 48, 136, 633
Hpy99I CGWCG 1 cut(s) 477
HpyAV CCTTC 1 cut(s) 667
HpyCH4III ACNGT 2 cut(s) 431, 630
HpyCH4V TGCA 4 cut(s) 209, 360, 554, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 771
Hsp92I GRCGYC 1 cut(s) 475
Hsp92II CATG 4 cut(s) 128, 397, 437, 581
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 3 cut(s) 304, 308, 763
LmnI GCTCC 3 cut(s) 323, 493, 737
LpnPI CCDG 5 cut(s) 354, 402, 559, 712, 768
Lsp1109I GCAGC 1 cut(s) 429
LweI GCATC 2 cut(s) 196, 590
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 425
MalI GATC 3 cut(s) 306, 310, 765
MboI GATC 3 cut(s) 304, 308, 763
MboII GAAGA 6 cut(s) 83, 242, 263, 563, 707, 770
MluCI AATT 5 cut(s) 103, 345, 479, 636, 740
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 2 cut(s) 151, 205
MnlI CCTC 6 cut(s) 36, 339, 346, 491, 582, 663
Mph1103I ATGCAT 1 cut(s) 583
MseI TTAA 2 cut(s) 567, 621
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 1 cut(s) 699
MwoI GCNNNNNNNGC 1 cut(s) 206
NcoI CCATGG 1 cut(s) 393
NdeI CATATG 1 cut(s) 58
NdeII GATC 3 cut(s) 304, 308, 763
NlaIII CATG 4 cut(s) 128, 397, 437, 581
NlaIV GGNNCC 1 cut(s) 379
NsiI ATGCAT 1 cut(s) 583
PagI TCATGA 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 1 cut(s) 419
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 2 cut(s) 567, 621
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 3 cut(s) 304, 308, 763
SchI GAGTC 1 cut(s) 23
SfaNI GCATC 2 cut(s) 196, 590
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 5 cut(s) 103, 345, 479, 636, 740
SsiI CCGC 1 cut(s) 677
SspI AATATT 1 cut(s) 443
SspMI CTAG 1 cut(s) 332
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 431, 630
TaqI TCGA 4 cut(s) 258, 307, 406, 472
TasI AATT 5 cut(s) 103, 345, 479, 636, 740
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 2 cut(s) 567, 621
Tru9I TTAA 2 cut(s) 567, 621
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 417
TspDTI ATGAA 4 cut(s) 45, 75, 113, 753
TspRI CASTG 1 cut(s) 55
XapI RAATTY 2 cut(s) 345, 740
XspI CTAG 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.