RLG00000001356
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000329
Physical Location & Seq
Reverse (-)
14605909 .. 14606703
795 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001356

Sequence Viewer

Length: 696 bp
ATGGTTGATGCCGCCGTTAGGGGATGGCGTGACAATAGTGGCATCTTAAGTAAGCAAACAGTGGAAGAAAGAATACTTCCTGTTTTGAATGCAAAACTTTGGTGTCACAAGACCTACAAAAACTACCAAAGCAGGCTTAGATGGTTTAAAGGTCGATGGAACTCTTACTCTACCCTTATGCATTTTAGCTCTAGTTTTGGATTTGATTCAACTACAAAGAGGTTTACTGCTTCTAATGAAGTATGGGAGGAATACCTTAAGGCTCACCCAAAGGACACCGACTTGCGCTATGGGACATTTGATAATTATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGCGGTTGGGAAAAACTCGGTCGGGTTGGGTAGTGTTATTGATGCAAGAACATTAGGTGTTGGTGAAGGTGGAGAGGCATGCATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCGAATCAAAATAATCCATCAACTCATCCAACATCACCCCTCCAATCCCCTGAAGCTTTGGAGGTTCCGAGGCGAGGAATAACTCAAAATAAAAGAAGTAGAATTGAGTATGAAGGAAATTCTAACTCAATTGGGAGCACCCCTCAAAGTGGCGTTATGGAGAAGCTTGATAAACTTTACTCTGGTTTTGAAGTAATGATTAACTTACTAGAGAAAAGAGAGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

232

Amino Acids

26.06

Weight (kDa)

5.68

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 85 1.6e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 12, 344
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 1 cut(s) 540
AfiI CCNNNNNNNGG 3 cut(s) 18, 542, 617
AflII CTTAAG 2 cut(s) 46, 257
AgsI TTSAA 3 cut(s) 88, 210, 659
AjuI GAANNNNNNNTTGG 4 cut(s) 312, 344, 447, 479
AluBI AGCT 3 cut(s) 189, 524, 634
AluI AGCT 3 cut(s) 189, 524, 634
Alw21I GWGCWC 1 cut(s) 608
ApoI RAATTY 1 cut(s) 586
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 3 cut(s) 257, 416, 495
AvaII GGWCC 1 cut(s) 467
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 608
BccI CCATC 4 cut(s) 18, 135, 150, 493
BfaI CTAG 2 cut(s) 192, 677
BfrI CTTAAG 2 cut(s) 46, 257
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 1 cut(s) 534
BmsI GCATC 2 cut(s) 51, 373
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BsaJI CCNNGG 1 cut(s) 536
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 542, 617
BseDI CCNNGG 1 cut(s) 536
BseGI GGATG 2 cut(s) 29, 493
BseLI CCNNNNNNNGG 3 cut(s) 18, 542, 617
Bsh1285I CGRYCG 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 608
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 3 cut(s) 18, 542, 617
BsmFI GGGAC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 608
BspACI CCGC 2 cut(s) 12, 344
BspLI GGNNCC 1 cut(s) 534
BspTI CTTAAG 2 cut(s) 46, 257
BssECI CCNNGG 1 cut(s) 536
Bst4CI ACNGT 1 cut(s) 61
BstAFI CTTAAG 2 cut(s) 46, 257
BstC8I GCNNGC 2 cut(s) 134, 421
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 2 cut(s) 29, 493
BstHHI GCGC 1 cut(s) 288
BstMCI CGRYCG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 435
BtsCI GGATG 2 cut(s) 29, 493
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 134, 421
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 467
CviAII CATG 1 cut(s) 420
CviJI RGCY 5 cut(s) 136, 189, 263, 524, 634
CviKI_1 RGCY 5 cut(s) 136, 189, 263, 524, 634
DdeI CTNAG 1 cut(s) 137
DraI TTTAAA 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 540
EcoT22I ATGCAT 2 cut(s) 183, 425
FaeI CATG 1 cut(s) 423
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 419
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 36, 480
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 192, 677
GlaI GCGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 12
HhaI GCGC 1 cut(s) 288
Hin1II CATG 1 cut(s) 423
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HindIII AAGCTT 2 cut(s) 522, 632
HinfI GANTC 2 cut(s) 206, 472
HphI GGTGA 3 cut(s) 257, 416, 495
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 537
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 401, 575
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 92, 181, 386, 423
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 1 cut(s) 423
HspAI GCGC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 603
LpnPI CCDG 4 cut(s) 93, 118, 531, 636
LweI GCATC 2 cut(s) 51, 373
MaeI CTAG 2 cut(s) 192, 677
MaeIII GTNAC 2 cut(s) 29, 104
MboII GAAGA 2 cut(s) 77, 440
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 1 cut(s) 608
MluCI AATT 5 cut(s) 304, 321, 570, 586, 597
MmeI TCCRAC 2 cut(s) 445, 521
MnlI CCTC 9 cut(s) 213, 241, 304, 409, 518, 523, 531, 536, 621
Mph1103I ATGCAT 2 cut(s) 183, 425
MseI TTAA 4 cut(s) 47, 147, 258, 669
MspCI CTTAAG 2 cut(s) 46, 257
MunI CAATTG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 423
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 2 cut(s) 29, 104
NsiI ATGCAT 2 cut(s) 183, 425
NspI RCATGY 1 cut(s) 423
PaeI GCATGC 1 cut(s) 423
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 206, 472
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 1 cut(s) 467
SaqAI TTAA 4 cut(s) 47, 147, 258, 669
SatI GCNGC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 467
SduI GDGCHC 1 cut(s) 608
SfaNI GCATC 2 cut(s) 51, 373
SinI GGWCC 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 46, 257
SmoI CTYRAG 2 cut(s) 46, 257
SphI GCATGC 1 cut(s) 423
Sse9I AATT 5 cut(s) 304, 321, 570, 586, 597
SsiI CCGC 2 cut(s) 12, 344
SspMI CTAG 2 cut(s) 192, 677
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 154
TaqII GACCGA 2 cut(s) 349, 484
TasI AATT 5 cut(s) 304, 321, 570, 586, 597
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 206, 472
Tru1I TTAA 4 cut(s) 47, 147, 258, 669
Tru9I TTAA 4 cut(s) 47, 147, 258, 669
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 2 cut(s) 29, 104
Tsp45I GTSAC 2 cut(s) 29, 104
TspDTI ATGAA 2 cut(s) 252, 594
TspRI CASTG 1 cut(s) 66
Vha464I CTTAAG 2 cut(s) 46, 257
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 1 cut(s) 586
XceI RCATGY 1 cut(s) 423
XspI CTAG 2 cut(s) 192, 677
Zsp2I ATGCAT 2 cut(s) 183, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.