RchiOBHm_Chr5g0052631
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000329
Physical Location & Seq
Reverse (-)
54622394 .. 54622988
595 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33002

Sequence Viewer

Length: 453 bp
ATGGGAGATTCACAAGGGAATGGTAAAAGAAAGGATTACAAAACTTGGAACACTGAAGAAAGCAACGTTTTGCTTCAACTTATGGTTGAAGGCGCCAAACTTGGATTTCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGCGAAGCTACTTCCTAAACTTAAGGAAAAACTTGGTTATGAAATAACTTTTAGTCATTACCAAAGCAGAGTGAAATGGTTTAAGAAACAATACACCAATTATTCTCAGCTTATGCGCCATAGTTCTGGATTTGGGTGGGATCCCATCACAAAAAGATTCACTGCTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATTAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

150

Amino Acids

17.24

Weight (kDa)

9.32

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 15 - 112 6.4e-18 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 356
AclI AACGTT 1 cut(s) 66
AclWI GGATC 2 cut(s) 281, 294
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 356
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 4 cut(s) 77, 89, 340, 400
AluBI AGCT 2 cut(s) 154, 256
AluI AGCT 2 cut(s) 154, 256
AlwI GGATC 2 cut(s) 281, 294
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 2 cut(s) 95, 264
BaeGI GKGCMC 1 cut(s) 363
BamHI GGATCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 440
BccI CCATC 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 94, 288
BsaHI GRCGYC 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 433
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 433
BseSI GKGCMC 1 cut(s) 363
BshNI GGYRCC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 363, 440
Bsp143I GATC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 94, 288
BspPI GGATC 2 cut(s) 281, 294
BspT107I GGYRCC 1 cut(s) 92
BspTI CTTAAG 1 cut(s) 167
BsrI ACTGG 1 cut(s) 433
BssMI GATC 1 cut(s) 286
BssNI GRCGYC 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 346
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 264
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 1 cut(s) 286
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 51, 306
CfoI GCGC 2 cut(s) 95, 264
CviAII CATG 1 cut(s) 356
CviJI RGCY 3 cut(s) 154, 256, 438
CviKI_1 RGCY 3 cut(s) 154, 256, 438
DdeI CTNAG 1 cut(s) 252
DinI GGCGCC 1 cut(s) 94
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 440
Eco57I CTGAAG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 440
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 1 cut(s) 359
FaiI YATR 7 cut(s) 83, 186, 260, 267, 325, 357, 390
FatI CATG 1 cut(s) 355
FokI GGATG 1 cut(s) 333
FriOI GRGCYC 1 cut(s) 440
GlaI GCGC 2 cut(s) 94, 263
HaeII RGCGCY 1 cut(s) 96
HhaI GCGC 2 cut(s) 95, 264
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 359
Hin6I GCGC 2 cut(s) 93, 262
HinP1I GCGC 2 cut(s) 93, 262
HinfI GANTC 2 cut(s) 8, 303
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 3 cut(s) 110, 273, 383
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 407, 425
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 359
HspAI GCGC 2 cut(s) 93, 262
KasI GGCGCC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 286
LpnPI CCDG 3 cut(s) 258, 396, 414
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 342
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 2 cut(s) 363, 440
MluCI AATT 3 cut(s) 244, 402, 441
Mly113I GGCGCC 1 cut(s) 93
MmeI TCCRAC 2 cut(s) 374, 391
MnlI CCTC 2 cut(s) 139, 385
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 3 cut(s) 117, 168, 228
MspCI CTTAAG 1 cut(s) 167
NarI GGCGCC 1 cut(s) 93
NdeII GATC 1 cut(s) 286
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 2 cut(s) 94, 288
NmuCI GTSAC 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 2 cut(s) 8, 303
PflMI CCANNNNNTGG 1 cut(s) 356
PluTI GGCGCC 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 117
Psp1406I AACGTT 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 94, 288
PsuI RGATCY 1 cut(s) 286
SaqAI TTAA 3 cut(s) 117, 168, 228
Sau3AI GATC 1 cut(s) 286
SduI GDGCHC 2 cut(s) 363, 440
SetI ASST 3 cut(s) 69, 156, 258
SfoI GGCGCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 3 cut(s) 244, 402, 441
SspDI GGCGCC 1 cut(s) 92
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 69
TaqII GACCGA 1 cut(s) 357
TasI AATT 3 cut(s) 244, 402, 441
TfiI GAWTC 2 cut(s) 8, 303
Tru1I TTAA 3 cut(s) 117, 168, 228
Tru9I TTAA 3 cut(s) 117, 168, 228
TscAI CASTG 2 cut(s) 58, 313
TseFI GTSAC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 201, 333
TspRI CASTG 2 cut(s) 58, 313
Van91I CCANNNNNTGG 1 cut(s) 356
Vha464I CTTAAG 1 cut(s) 167
VspI ATTAAT 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.