Rorug05G0407400
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000329
Physical Location & Seq
Forward (+)
56146125 .. 56152169
6045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0407400.1

Sequence Viewer

Length: 990 bp
ATGGAACCCGACAGGTTGAACTCGCCCAGCACATTTACAATGGATTTGGAAGTTTTGGGGCATGAGTTGCAGTTCATTCAGGATCCTAATTCAAAGCATCTAGGAACTACAGTTTGGGATGCATCGCTGGTATTCGCCAAGTTTCTGGAAAAGAATTCCAGAAGGGGAAAGTTCTCCCCGTCAAAACTTAAAGGGAAACGTGTCATTGAACTTGGAGCAGGTTGTGGAGTAGCAGGGTTTGGCATGGCATTACTGGGATGTGATGTGGTTATGACAGATCAAGTTGAGGTTTTGCCATTGCTAATGAGAAATGTTGAACGGAATACTTCAAGGATTACACAGATGAATCCTGGTTCTGAGTCATTTGGTTCGGTCCAGGTAGCAGAGTTAAATTGGGGAAATGAGGATCATATAAGAGCCGTTGATCCACCATTTGACTACATCATTGGCACTGACGTTGTTTACAAAGAAGATCTCTTGGAGCCACTGTTGCAGACAATATTTGCATTGTCAGGGCCTAAAACTGCAATTTTGCTGGGCTATGAGATTCGTTCTACAAGTGTCCATGAGCAAATGGTTGAAATGTGGAAAAGACACTTCGAGGTGAAACTTGTTCCAAATTCTAAGATGGATAGTACCTACCAACACCCAAGTATTCAACTTTTCATTATGAGATCAAAGCCGCCATCAGGGTATGCAGAAAAAACTGTTGAGCGGATAGATCAAGAAGTTGATGAAGTGGAAACAGCAGACAATAAAGCCAAGGTAATTGATGAGAAAGTTGATGGAAATCCAGTTAAGGTGATTTATCAAAATGCTGTCCTAGTGGGAAGCAGTAAAGAAAAAGGAGAAAATAGCTCTCTTTTAGGAAGTGTTGAAGAAGATTGTGAGCCAGTTACAATACCTCAGAATGGTAAACTTACTGATTGGGAAGCTAGAAGATATGGCTCGATGGCTGCACGTCTTCTGCACGATGTCAAAATCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

329

Amino Acids

36.73

Weight (kDa)

5.24

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 22 - 190 1.5e-32 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 715
AciI CCGC 2 cut(s) 683, 715
AclWI GGATC 4 cut(s) 77, 90, 414, 419
AcsI RAATTY 2 cut(s) 154, 619
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 2 cut(s) 689, 911
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 8 cut(s) 19, 93, 209, 317, 330, 581, 659, 878
AjiI CACGTC 1 cut(s) 962
AjnI CCWGG 2 cut(s) 349, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 2 cut(s) 858, 935
AluI AGCT 2 cut(s) 858, 935
AlwI GGATC 4 cut(s) 77, 90, 414, 419
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 1 cut(s) 956
ApoI RAATTY 2 cut(s) 154, 619
AspS9I GGNCC 2 cut(s) 373, 515
AsuHPI GGTGA 2 cut(s) 616, 814
AvaII GGWCC 1 cut(s) 373
BamHI GGATCC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 956
BbvI GCAGC 1 cut(s) 943
BccI CCATC 4 cut(s) 622, 694, 779, 946
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 351, 377
BfaI CTAG 3 cut(s) 101, 824, 936
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 209
BglII AGATCT 1 cut(s) 472
BisI GCNGC 2 cut(s) 683, 957
BlsI GCNGC 2 cut(s) 684, 958
Bme1390I CCNGG 2 cut(s) 351, 377
Bme18I GGWCC 1 cut(s) 373
BmgBI CACGTC 1 cut(s) 962
BmgT120I GGNCC 2 cut(s) 373, 515
BmiI GGNNCC 3 cut(s) 6, 84, 483
BmrFI CCNGG 2 cut(s) 351, 377
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 3 cut(s) 106, 109, 131
BmuI ACTGGG 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 956
BsaBI GATNNNNATC 1 cut(s) 789
BsaJI CCNNGG 1 cut(s) 762
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 689, 911
Bse1I ACTGG 3 cut(s) 258, 794, 893
Bse3DI GCAATG 1 cut(s) 296
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 2 cut(s) 351, 377
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 2 cut(s) 124, 263
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 2 cut(s) 689, 911
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 348, 920
BseNI ACTGG 3 cut(s) 258, 794, 893
BseXI GCAGC 1 cut(s) 943
BseYI CCCAGC 2 cut(s) 26, 535
BsgI GTGCAG 2 cut(s) 942, 953
BshFI GGCC 1 cut(s) 517
BslI CCNNNNNNNGG 2 cut(s) 689, 911
BsnI GGCC 1 cut(s) 517
Bsp143I GATC 7 cut(s) 82, 277, 406, 424, 472, 674, 721
BspACI CCGC 2 cut(s) 683, 715
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 2 cut(s) 349, 919
BspLI GGNNCC 3 cut(s) 6, 84, 483
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 4 cut(s) 77, 90, 414, 419
BsrBI CCGCTC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 296
BsrI ACTGG 3 cut(s) 258, 794, 893
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 7 cut(s) 82, 277, 406, 424, 472, 674, 721
BssT1I CCWWGG 1 cut(s) 762
Bst2UI CCWGG 2 cut(s) 351, 377
Bst4CI ACNGT 3 cut(s) 112, 489, 709
BstAPI GCANNNNNTGC 1 cut(s) 67
BstDEI CTNAG 3 cut(s) 357, 624, 906
BstF5I GGATG 2 cut(s) 124, 263
BstKTI GATC 7 cut(s) 85, 280, 409, 427, 475, 677, 724
BstMBI GATC 7 cut(s) 82, 277, 406, 424, 472, 674, 721
BstMWI GCNNNNNNNGC 2 cut(s) 67, 490
BstNI CCWGG 2 cut(s) 351, 377
BstSCI CCNGG 2 cut(s) 349, 375
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 943
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 2 cut(s) 82, 472
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 2 cut(s) 82, 472
BsuRI GGCC 1 cut(s) 517
BtgZI GCGATG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 962
BtsCI GGATG 2 cut(s) 124, 263
BtsIMutI CAGTG 2 cut(s) 450, 485
BveI ACCTGC 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 373, 515
Csp6I GTAC 1 cut(s) 636
CviAII CATG 3 cut(s) 62, 244, 566
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 3 cut(s) 357, 624, 906
DpnI GATC 7 cut(s) 84, 279, 408, 426, 474, 676, 723
DpnII GATC 7 cut(s) 82, 277, 406, 424, 472, 674, 721
Eco130I CCWWGG 1 cut(s) 762
Eco47I GGWCC 1 cut(s) 373
EcoO109I RGGNCCY 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 349, 375
EcoT14I CCWWGG 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 762
FaeI CATG 3 cut(s) 65, 247, 569
FatI CATG 3 cut(s) 61, 243, 565
Fnu4HI GCNGC 2 cut(s) 683, 957
FokI GGATG 2 cut(s) 131, 270
Fsp4HI GCNGC 2 cut(s) 683, 957
FspBI CTAG 3 cut(s) 101, 824, 936
GluI GCNGC 2 cut(s) 683, 957
GsaI CCCAGC 2 cut(s) 30, 539
HaeIII GGCC 1 cut(s) 517
Hin1II CATG 3 cut(s) 65, 247, 569
HinfI GANTC 3 cut(s) 346, 359, 547
HphI GGTGA 2 cut(s) 616, 814
Hpy166II GTNNAC 2 cut(s) 463, 917
Hpy188I TCNGA 2 cut(s) 358, 909
Hpy188III TCNNGA 4 cut(s) 80, 146, 159, 725
Hpy8I GTNNAC 2 cut(s) 463, 917
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 3 cut(s) 112, 489, 709
HpyCH4IV ACGT 3 cut(s) 199, 456, 961
HpyCH4V TGCA 8 cut(s) 70, 122, 493, 506, 527, 698, 959, 970
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 490
HpyF3I CTNAG 3 cut(s) 357, 624, 906
HpySE526I ACGT 3 cut(s) 199, 456, 961
Hsp92II CATG 3 cut(s) 65, 247, 569
Kzo9I GATC 7 cut(s) 82, 277, 406, 424, 472, 674, 721
LmnI GCTCC 2 cut(s) 215, 481
Lsp1109I GCAGC 1 cut(s) 943
LweI GCATC 3 cut(s) 106, 109, 131
MaeI CTAG 3 cut(s) 101, 824, 936
MaeII ACGT 3 cut(s) 199, 456, 961
MaeIII GTNAC 1 cut(s) 895
MalI GATC 7 cut(s) 84, 279, 408, 426, 474, 676, 723
MbiI CCGCTC 1 cut(s) 715
MboI GATC 7 cut(s) 82, 277, 406, 424, 472, 674, 721
MboII GAAGA 5 cut(s) 482, 890, 893, 951, 956
MflI RGATCY 2 cut(s) 82, 472
MluCI AATT 6 cut(s) 88, 154, 391, 528, 619, 768
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 4 cut(s) 280, 397, 595, 915
Mph1103I ATGCAT 1 cut(s) 124
MseI TTAA 3 cut(s) 189, 389, 798
MspR9I CCNGG 2 cut(s) 351, 377
MvaI CCWGG 2 cut(s) 351, 377
MwoI GCNNNNNNNGC 2 cut(s) 67, 490
NdeII GATC 7 cut(s) 82, 277, 406, 424, 472, 674, 721
NlaIII CATG 3 cut(s) 65, 247, 569
NlaIV GGNNCC 3 cut(s) 6, 84, 483
NsiI ATGCAT 1 cut(s) 124
PfeI GAWTC 2 cut(s) 346, 547
PkrI GCNGC 2 cut(s) 684, 958
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 349, 375
PspFI CCCAGC 2 cut(s) 26, 535
PspGI CCWGG 2 cut(s) 349, 375
PspN4I GGNNCC 3 cut(s) 6, 84, 483
PspPI GGNCC 2 cut(s) 373, 515
PsuI RGATCY 2 cut(s) 82, 472
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
SaqAI TTAA 3 cut(s) 189, 389, 798
SatI GCNGC 2 cut(s) 683, 957
Sau3AI GATC 7 cut(s) 82, 277, 406, 424, 472, 674, 721
Sau96I GGNCC 2 cut(s) 373, 515
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 351, 377
SfaNI GCATC 3 cut(s) 106, 109, 131
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 373
Sse9I AATT 6 cut(s) 88, 154, 391, 528, 619, 768
SsiI CCGC 2 cut(s) 683, 715
SspI AATATT 1 cut(s) 501
SspMI CTAG 3 cut(s) 101, 824, 936
StyD4I CCNGG 2 cut(s) 349, 375
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 3 cut(s) 112, 489, 709
TaiI ACGT 3 cut(s) 202, 459, 964
TaqI TCGA 2 cut(s) 600, 950
TaqII GACCGA 1 cut(s) 361
TasI AATT 6 cut(s) 88, 154, 391, 528, 619, 768
TauI GCSGC 1 cut(s) 685
TfiI GAWTC 2 cut(s) 346, 547
Tru1I TTAA 3 cut(s) 189, 389, 798
Tru9I TTAA 3 cut(s) 189, 389, 798
TscAI CASTG 2 cut(s) 457, 492
TseI GCWGC 1 cut(s) 956
TspDTI ATGAA 4 cut(s) 64, 359, 655, 750
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 2 cut(s) 457, 492
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 2 cut(s) 154, 619
XspI CTAG 3 cut(s) 101, 824, 936
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.