RchiOBHm_Chr5g0019361
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000329
Physical Location & Seq
Reverse (-)
13860554 .. 13861935
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29949

Sequence Viewer

Length: 693 bp
ATGAGCAGTGGACCGAGTGATACCTTATTAGAACTAATGGTTGACGCCGCCGTTAGGGGATGGCGTGACAATAGTGGCATCTTAAGTAAGCAAACAGTGGAAGAAAGAATACTTCCTGTTCTTAATGCAAAACTTAGGTGTCACAAGACCTACAAAAACTACCAAAGCAGGGTTAGATGGTTTAAAGGTCGATGGAACTCTTACTCTACCCTTATGCGTTTTAGCTCTGGTTTTGGATTTGATTCAACTACAAAGAGGTTTACTGCTTTTAATGAAGTATGGGAGGAATACCTTAAGGCTCACCCAAAGGACACCGACTTGCGCTATGGGACATTTGATGACCATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGCGGTTGGGAAAAACTCGGTCGGGTTGGGTAGTGTTACTGATGCAAGAACATTAGGTGTTGGTGAAGGTAGAGAGGAATGCATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCAAATCAAAATAATCCATCAACTCATTCAACATCACCCCTCCAATCTCCTGAAATTTTGGAGGTTCTGAGGCGAGGAACAACCCAAAATAAAAGAAGTAGAACAGATTATGAAGGAAATTCTAACTCAATTGGGGGCACCCCTCAAGCAAATTGTGTCCTTGTAGAAAAATGGAAGGGGAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

230

Amino Acids

25.84

Weight (kDa)

6.13

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 7 - 97 4.9e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 641
AciI CCGC 2 cut(s) 48, 380
AcsI RAATTY 2 cut(s) 558, 622
AcyI GRCGYC 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 54, 169
AflII CTTAAG 2 cut(s) 82, 293
AgsI TTSAA 2 cut(s) 246, 534
AjuI GAANNNNNNNTTGG 4 cut(s) 348, 380, 483, 515
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
ApoI RAATTY 2 cut(s) 558, 622
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 11, 503
AsuHPI GGTGA 3 cut(s) 293, 452, 531
AvaII GGWCC 2 cut(s) 11, 503
BaeGI GKGCMC 1 cut(s) 644
BanI GGYRCC 1 cut(s) 641
BarI GAAGNNNNNNTAC 2 cut(s) 93, 125
BbsI GAAGAC 1 cut(s) 471
BccI CCATC 4 cut(s) 54, 171, 186, 529
BceAI ACGGC 1 cut(s) 35
BfrI CTTAAG 2 cut(s) 82, 293
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 2 cut(s) 11, 503
BmgT120I GGNCC 2 cut(s) 11, 503
BmiI GGNNCC 1 cut(s) 643
BmsI GCATC 2 cut(s) 87, 409
BpiI GAAGAC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 169
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 54, 169
BseMII CTCAG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 399
BshNI GGYRCC 1 cut(s) 641
BsiEI CGRYCG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 2 cut(s) 54, 169
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 644
BspACI CCGC 2 cut(s) 48, 380
BspCNI CTCAG 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 643
BspT107I GGYRCC 1 cut(s) 641
BspTI CTTAAG 2 cut(s) 82, 293
BssNI GRCGYC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 45
BstAFI CTTAAG 2 cut(s) 82, 293
BstDEI CTNAG 2 cut(s) 134, 572
BstF5I GGATG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 324
BstMCI CGRYCG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 644
BstV2I GAAGAC 1 cut(s) 471
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 13, 102
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 11, 503
CseI GACGC 1 cut(s) 53
CviAII CATG 1 cut(s) 344
CviJI RGCY 2 cut(s) 225, 299
CviKI_1 RGCY 2 cut(s) 225, 299
DdeI CTNAG 2 cut(s) 134, 572
DraI TTTAAA 1 cut(s) 184
Eco47I GGWCC 2 cut(s) 11, 503
EcoT22I ATGCAT 1 cut(s) 461
FaeI CATG 1 cut(s) 347
FaiI YATR 8 cut(s) 215, 280, 327, 345, 461, 477, 482, 615
FaqI GGGAC 1 cut(s) 343
FatI CATG 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 48
GlaI GCGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 48
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 347
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 1 cut(s) 242
HphI GGTGA 3 cut(s) 293, 452, 531
Hpy166II GTNNAC 3 cut(s) 11, 43, 261
Hpy188I TCNGA 1 cut(s) 573
Hpy188III TCNNGA 1 cut(s) 554
Hpy8I GTNNAC 3 cut(s) 11, 43, 261
HpyAV CCTTC 3 cut(s) 437, 611, 673
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 128, 422, 459
HpyF3I CTNAG 2 cut(s) 134, 572
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 347
HspAI GCGC 1 cut(s) 322
LpnPI CCDG 4 cut(s) 129, 154, 213, 567
LweI GCATC 2 cut(s) 87, 409
MaeIII GTNAC 3 cut(s) 65, 140, 412
MboII GAAGA 2 cut(s) 113, 476
MfeI CAATTG 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 5 cut(s) 357, 558, 622, 633, 655
MmeI TCCRAC 1 cut(s) 481
Mph1103I ATGCAT 1 cut(s) 461
MseI TTAA 5 cut(s) 83, 123, 183, 270, 294
MspCI CTTAAG 2 cut(s) 82, 293
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 461
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 1 cut(s) 643
NmuCI GTSAC 2 cut(s) 65, 140
NsiI ATGCAT 1 cut(s) 461
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 643
PspPI GGNCC 2 cut(s) 11, 503
SaqAI TTAA 5 cut(s) 83, 123, 183, 270, 294
SatI GCNGC 1 cut(s) 48
Sau96I GGNCC 2 cut(s) 11, 503
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 2 cut(s) 87, 409
SinI GGWCC 2 cut(s) 11, 503
SmlI CTYRAG 3 cut(s) 82, 293, 648
SmoI CTYRAG 3 cut(s) 82, 293, 648
Sse9I AATT 5 cut(s) 357, 558, 622, 633, 655
SsiI CCGC 2 cut(s) 48, 380
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 190
TaqII GACCGA 2 cut(s) 28, 385
TasI AATT 5 cut(s) 357, 558, 622, 633, 655
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 5 cut(s) 83, 123, 183, 270, 294
Tru9I TTAA 5 cut(s) 83, 123, 183, 270, 294
TscAI CASTG 2 cut(s) 13, 102
TseFI GTSAC 2 cut(s) 65, 140
Tsp45I GTSAC 2 cut(s) 65, 140
TspDTI ATGAA 2 cut(s) 288, 630
TspRI CASTG 2 cut(s) 13, 102
Vha464I CTTAAG 2 cut(s) 82, 293
VpaK11BI GGWCC 2 cut(s) 11, 503
XapI RAATTY 2 cut(s) 558, 622
Zsp2I ATGCAT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.