RLG00000032525
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000329
Physical Location & Seq
Forward (+)
16106080 .. 16107079
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032525

Sequence Viewer

Length: 771 bp
ATGGGAGATTCACAAGGGAATGGTAAAAGAAAGGATTACAAAACTTGGAACACTGAAGAAAGCAACGTTTTGCTTCAACTTATGGTTGAAGGCGCCAAACTTGGATTTCGTGATATTAATGGTCTTATGCGCCATAGTTCTGGATTTGGGTGGGATCCCATCACAAAAAGATTCACTGCTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACACATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGTGATGATACAGATGCGACAACATTTGGAGCGGAGGAAAATGAATCTTGGGGAATTGGTGGCATAGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTACAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAAGGTACCAGTATAGATGCTCCAGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGAACTGACTATGAAAATAATAGTGGCTCAAAAAGGGCTACTGGTCAGGCTGAGGTTCTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGACCTTTTGGATGCTATGAAGGAGACTCCAGGATTAACTGATGAAGCTTGCTTTATGGCTCTTGATTTGCTTAATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

257

Amino Acids

28.03

Weight (kDa)

4.74

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 36 - 68 9.5e-06 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 234 - 256 1.9e-06 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 488
AccB1I GGYRCC 2 cut(s) 92, 488
AccB7I CCANNNNNTGG 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 350
AciI CCGC 1 cut(s) 350
AclI AACGTT 1 cut(s) 66
AclWI GGATC 2 cut(s) 149, 162
AcsI RAATTY 1 cut(s) 651
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 423, 490
AfiI CCNNNNNNNGG 2 cut(s) 224, 485
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 4 cut(s) 77, 89, 208, 268
AjnI CCWGG 1 cut(s) 718
AluBI AGCT 2 cut(s) 509, 737
AluI AGCT 2 cut(s) 509, 737
Alw26I GTCTC 1 cut(s) 707
AlwI GGATC 2 cut(s) 149, 162
ApoI RAATTY 1 cut(s) 651
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 246
Asp718I GGTACC 1 cut(s) 488
AspLEI GCGC 2 cut(s) 95, 132
AsuHPI GGTGA 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 231
BamHI GGATCC 1 cut(s) 154
BanI GGYRCC 2 cut(s) 92, 488
BanII GRGCYC 1 cut(s) 308
BbvCI CCTCAGC 1 cut(s) 594
BccI CCATC 3 cut(s) 167, 380, 469
BciT130I CCWGG 1 cut(s) 720
BcoDI GTCTC 1 cut(s) 707
BfaI CTAG 2 cut(s) 317, 602
BfoI RGCGCY 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 720
BmiI GGNNCC 3 cut(s) 94, 156, 490
BmrFI CCNGG 1 cut(s) 720
BmsI GCATC 3 cut(s) 322, 490, 691
BpmI CTGGAG 2 cut(s) 489, 702
Bpu10I CCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 484
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 485
Bse1I ACTGG 3 cut(s) 301, 492, 589
BseBI CCWGG 1 cut(s) 720
BseDI CCNNGG 1 cut(s) 484
BseGI GGATG 2 cut(s) 214, 706
BseLI CCNNNNNNNGG 2 cut(s) 224, 485
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 3 cut(s) 301, 492, 589
BseSI GKGCMC 1 cut(s) 231
BshNI GGYRCC 2 cut(s) 92, 488
BslI CCNNNNNNNGG 2 cut(s) 224, 485
BsmAI GTCTC 1 cut(s) 707
Bsp1286I GDGCHC 2 cut(s) 231, 308
Bsp143I GATC 2 cut(s) 154, 400
BspACI CCGC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 586
BspLI GGNNCC 3 cut(s) 94, 156, 490
BspPI GGATC 2 cut(s) 149, 162
BspT107I GGYRCC 2 cut(s) 92, 488
BsrBI CCGCTC 1 cut(s) 350
BsrI ACTGG 3 cut(s) 301, 492, 589
BssECI CCNNGG 1 cut(s) 484
BssMI GATC 2 cut(s) 154, 400
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 720
Bst6I CTCTTC 1 cut(s) 665
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 739
BstDEI CTNAG 1 cut(s) 594
BstF5I GGATG 2 cut(s) 214, 706
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 132
BstKTI GATC 2 cut(s) 157, 403
BstMAI GTCTC 1 cut(s) 707
BstMBI GATC 2 cut(s) 154, 400
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 718
BstSLI GKGCMC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 1 cut(s) 154
BtsCI GGATG 2 cut(s) 214, 706
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 51, 174
Cac8I GCNNGC 1 cut(s) 739
CfoI GCGC 2 cut(s) 95, 132
Csp6I GTAC 2 cut(s) 422, 489
CviAII CATG 2 cut(s) 224, 415
CviJI RGCY 8 cut(s) 306, 509, 570, 581, 593, 660, 737, 749
CviKI_1 RGCY 8 cut(s) 306, 509, 570, 581, 593, 660, 737, 749
CviQI GTAC 2 cut(s) 422, 489
DdeI CTNAG 1 cut(s) 594
DinI GGCGCC 1 cut(s) 94
DpnI GATC 2 cut(s) 156, 402
DpnII GATC 2 cut(s) 154, 400
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
Eco130I CCWWGG 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 308
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 2 cut(s) 227, 418
FatI CATG 2 cut(s) 223, 414
FokI GGATG 2 cut(s) 201, 713
FriOI GRGCYC 1 cut(s) 308
FspBI CTAG 2 cut(s) 317, 602
GlaI GCGC 2 cut(s) 94, 131
GsuI CTGGAG 2 cut(s) 489, 702
HaeII RGCGCY 1 cut(s) 96
HhaI GCGC 2 cut(s) 95, 132
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 2 cut(s) 227, 418
Hin6I GCGC 2 cut(s) 93, 130
HinP1I GCGC 2 cut(s) 93, 130
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 7 cut(s) 8, 171, 362, 437, 526, 677, 715
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 6 cut(s) 110, 141, 251, 602, 681, 752
HpyAV CCTTC 2 cut(s) 83, 703
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 275, 293
HpyF3I CTNAG 1 cut(s) 594
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 2 cut(s) 227, 418
HspAI GCGC 2 cut(s) 93, 130
KasI GGCGCC 1 cut(s) 92
KpnI GGTACC 1 cut(s) 492
Kzo9I GATC 2 cut(s) 154, 400
LmnI GCTCC 3 cut(s) 347, 508, 514
LweI GCATC 3 cut(s) 322, 490, 691
MaeI CTAG 2 cut(s) 317, 602
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 210, 634, 689
MalI GATC 2 cut(s) 156, 402
MbiI CCGCTC 1 cut(s) 350
MboI GATC 2 cut(s) 154, 400
MboII GAAGA 2 cut(s) 68, 682
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 231, 308
MluCI AATT 4 cut(s) 270, 372, 630, 651
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 3 cut(s) 446, 520, 709
MmeI TCCRAC 2 cut(s) 242, 259
MnlI CCTC 4 cut(s) 253, 346, 490, 589
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 5 cut(s) 117, 662, 725, 762, 769
MspR9I CCNGG 1 cut(s) 720
MvaI CCWGG 1 cut(s) 720
NarI GGCGCC 1 cut(s) 93
NdeII GATC 2 cut(s) 154, 400
NlaIII CATG 2 cut(s) 227, 418
NlaIV GGNNCC 3 cut(s) 94, 156, 490
NmuCI GTSAC 3 cut(s) 210, 634, 689
NspI RCATGY 1 cut(s) 418
PciI ACATGT 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 4 cut(s) 8, 171, 362, 677
PflMI CCANNNNNTGG 1 cut(s) 224
PfoI TCCNGGA 1 cut(s) 718
PleI GAGTC 3 cut(s) 445, 520, 709
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 3 cut(s) 445, 520, 709
PscI ACATGT 1 cut(s) 414
PshBI ATTAAT 1 cut(s) 117
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 3 cut(s) 94, 156, 490
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 2 cut(s) 423, 490
RsaNI GTAC 2 cut(s) 422, 489
SaqAI TTAA 5 cut(s) 117, 662, 725, 762, 769
Sau3AI GATC 2 cut(s) 154, 400
SchI GAGTC 3 cut(s) 446, 520, 709
ScrFI CCNGG 1 cut(s) 720
SduI GDGCHC 2 cut(s) 231, 308
SetI ASST 7 cut(s) 69, 322, 490, 511, 600, 696, 739
SfaNI GCATC 3 cut(s) 322, 490, 691
SfoI GGCGCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 4 cut(s) 270, 372, 630, 651
SsiI CCGC 1 cut(s) 350
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 2 cut(s) 317, 602
StyD4I CCNGG 1 cut(s) 718
StyI CCWWGG 1 cut(s) 484
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 403
TaqII GACCGA 1 cut(s) 225
TasI AATT 4 cut(s) 270, 372, 630, 651
TfiI GAWTC 4 cut(s) 8, 171, 362, 677
Tru1I TTAA 5 cut(s) 117, 662, 725, 762, 769
Tru9I TTAA 5 cut(s) 117, 662, 725, 762, 769
TscAI CASTG 2 cut(s) 58, 181
TseFI GTSAC 3 cut(s) 210, 634, 689
Tsp45I GTSAC 3 cut(s) 210, 634, 689
TspDTI ATGAA 5 cut(s) 201, 375, 570, 722, 747
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 2 cut(s) 58, 181
Van91I CCANNNNNTGG 1 cut(s) 224
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 651
XbaI TCTAGA 1 cut(s) 601
XceI RCATGY 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 2 cut(s) 317, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.