Rmu_sc0018061.1_g000001
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018061.1
OG0000329
Physical Location & Seq
Reverse (-)
2 .. 1058
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018061.1_g000001.1.cds

Sequence Viewer

Length: 764 bp
atgggagattcacaagggaatggtaaaagaaaagattacaaaacttggaatgctgaagagagcaatgttttgcttcaacttatggttgaaggcgccaaacttggattgcgtgatattaatggtgtgataagcaaacaaatagtagaggcgaagctacttcctaaactgaaggaaaaacttgaaacttttccagactatgaggacttgaaaattgcagttggaaatggcactgcaactggaatgggctcaatcagtctagatgatgatacagatgcctctacatttggagcggaagaaaacggaccttggggaattgatggattagtttttgatcgaaatactaacatgttcgtgcaaagtgaaaatgagtcatcacaccaagaaaactcgccatctctttcacaacaaccctcccaaggtactaatgtagatgcttcaccacatagcaggactcaaggaaaacggagtagggctgactatgaaaataatagcggctcaaagggggcaactagtcaggctgaggttttagaaaacttatcaagtggcattggtaaaattgtcacaagttttgataaaatttgtggcttaatggagaagagagaatcaagagagagtgatcttttggatgctatgaacgagaccccaggattaactgatgaggcttgctttatggctcttgattttcttaatactaaagcaaagcaagatttcttcttgaagatgactcctgaacaacgacataattggatcacctataaacaaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

254

Amino Acids

27.98

Weight (kDa)

4.81

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 290
AciI CCGC 2 cut(s) 290, 492
AclWI GGATC 1 cut(s) 755
AcsI RAATTY 1 cut(s) 576
AcuI CTGAAG 2 cut(s) 75, 188
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 5 cut(s) 77, 89, 182, 208, 718
AhlI ACTAGT 1 cut(s) 509
AjnI CCWGG 1 cut(s) 643
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 1 cut(s) 755
ApoI RAATTY 1 cut(s) 576
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 429, 742
AvaII GGWCC 1 cut(s) 302
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 519
BccI CCATC 2 cut(s) 311, 400
BciT130I CCWGG 1 cut(s) 645
BcoDI GTCTC 1 cut(s) 632
BcuI ACTAGT 1 cut(s) 509
BfaI CTAG 2 cut(s) 257, 510
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 1 cut(s) 493
BlsI GCNGC 1 cut(s) 494
Bme1390I CCNGG 1 cut(s) 645
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 3 cut(s) 262, 421, 616
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 3 cut(s) 305, 415, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 3 cut(s) 305, 415, 643
BseGI GGATG 1 cut(s) 631
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 632
BsmI GAATGC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 3 cut(s) 331, 616, 747
BspACI CCGC 2 cut(s) 290, 492
BspCNI CTCAG 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 632
BsrBI CCGCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 3 cut(s) 305, 415, 643
BssMI GATC 3 cut(s) 331, 616, 747
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 305, 415
Bst2UI CCWGG 1 cut(s) 645
Bst6I CTCTTC 2 cut(s) 51, 590
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 631
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 3 cut(s) 334, 619, 750
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 3 cut(s) 331, 616, 747
BstNI CCWGG 1 cut(s) 645
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 643
BtsCI GGATG 1 cut(s) 631
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 664
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 420
CviAII CATG 1 cut(s) 346
CviJI RGCY 8 cut(s) 154, 246, 473, 495, 518, 585, 662, 674
CviKI_1 RGCY 8 cut(s) 154, 246, 473, 495, 518, 585, 662, 674
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 1 cut(s) 519
DinI GGCGCC 1 cut(s) 94
DpnI GATC 3 cut(s) 333, 618, 749
DpnII GATC 3 cut(s) 331, 616, 747
Eam1104I CTCTTC 2 cut(s) 51, 590
EarI CTCTTC 2 cut(s) 51, 590
Eco130I CCWWGG 2 cut(s) 305, 415
Eco24I GRGCYC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 632
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 75, 188
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 2 cut(s) 305, 415
EcoT38I GRGCYC 1 cut(s) 248
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 2 cut(s) 305, 415
FaeI CATG 1 cut(s) 349
FaiI YATR 9 cut(s) 83, 198, 347, 444, 480, 632, 671, 741, 756
FatI CATG 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 493
FokI GGATG 1 cut(s) 638
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 493
FspBI CTAG 2 cut(s) 257, 510
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 493
HaeII RGCGCY 1 cut(s) 96
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 349
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HinfI GANTC 5 cut(s) 8, 368, 451, 602, 724
HphI GGTGA 2 cut(s) 429, 742
Hpy188III TCNNGA 6 cut(s) 191, 257, 606, 677, 715, 728
HpyAV CCTTC 2 cut(s) 83, 163
HpyCH4V TGCA 3 cut(s) 215, 233, 355
HpyF3I CTNAG 1 cut(s) 519
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 349
HspAI GCGC 1 cut(s) 93
KasI GGCGCC 1 cut(s) 92
Kzo9I GATC 3 cut(s) 331, 616, 747
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 7 cut(s) 204, 222, 433, 500, 630, 657, 741
LweI GCATC 3 cut(s) 262, 421, 616
MaeI CTAG 2 cut(s) 257, 510
MaeIII GTNAC 1 cut(s) 559
MalI GATC 3 cut(s) 333, 618, 749
MbiI CCGCTC 1 cut(s) 290
MboI GATC 3 cut(s) 331, 616, 747
MboII GAAGA 5 cut(s) 68, 305, 607, 703, 730
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 5 cut(s) 210, 312, 555, 576, 742
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 3 cut(s) 377, 445, 718
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 6 cut(s) 139, 193, 286, 421, 514, 652
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 4 cut(s) 117, 587, 650, 687
MslI CAYNNNNRTG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 645
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 645
NarI GGCGCC 1 cut(s) 93
NdeII GATC 3 cut(s) 331, 616, 747
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 559
NspI RCATGY 1 cut(s) 349
PciI ACATGT 1 cut(s) 345
PctI GAATGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 8, 602
PkrI GCNGC 1 cut(s) 494
PleI GAGTC 3 cut(s) 376, 445, 718
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 3 cut(s) 376, 445, 718
PscI ACATGT 1 cut(s) 345
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 302
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 4 cut(s) 117, 587, 650, 687
SatI GCNGC 1 cut(s) 493
Sau3AI GATC 3 cut(s) 331, 616, 747
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 3 cut(s) 377, 445, 718
ScrFI CCNGG 1 cut(s) 645
SduI GDGCHC 1 cut(s) 248
SetI ASST 5 cut(s) 156, 307, 421, 525, 755
SfaNI GCATC 3 cut(s) 262, 421, 616
SfoI GGCGCC 1 cut(s) 94
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
SpeI ACTAGT 1 cut(s) 509
Sse9I AATT 5 cut(s) 210, 312, 555, 576, 742
SsiI CCGC 2 cut(s) 290, 492
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 2 cut(s) 257, 510
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 2 cut(s) 305, 415
TaqI TCGA 1 cut(s) 334
TasI AATT 5 cut(s) 210, 312, 555, 576, 742
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 2 cut(s) 8, 602
Tru1I TTAA 4 cut(s) 117, 587, 650, 687
Tru9I TTAA 4 cut(s) 117, 587, 650, 687
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 559
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 2 cut(s) 495, 647
TspGWI ACGGA 2 cut(s) 315, 478
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 302
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 576
XbaI TCTAGA 1 cut(s) 256
XceI RCATGY 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 2 cut(s) 257, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.