RLG00000020522
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000329
Physical Location & Seq
Reverse (-)
65916678 .. 65921439
4762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020522

Sequence Viewer

Length: 669 bp
ATGGTACATACAAATGAAAGGAAGGAAGGCGAAGAACATGAGAAGGCCAGGGCTGCCCTTGAGGAGATCGTTAAGCGGAGCGTAGAGAACGGTGAAGAAGGAGATGGCGGTAGTGAGGAGGAGCTGATTCTTGCCTTTGCTGAGGCCGGTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGCGATGATATAGGTGCCACAACATTTGGAGCGGAAGAAAACGGGCCTTGGGGAATTGATGGATTAGTTTTTGATCAAAATACTAACATGTTCGTGCAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAAGGTACCAATGTAGATGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGGGCTGACTATGAAAATAATAGCGGCTCAAAGGGGGCAACTAGTCAGGCTGAGGGTTTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGATCTTTTGGATGTTATGAAGGAGACCCCAGGATTAACTAATGAGGCTTGCTTTATGGCTCTTGATTTGCTTAATACTAAAGCAAAGCAAGATTTCTTCTTGAAGATGACTCCTGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

223

Amino Acids

23.88

Weight (kDa)

4.51

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 186 - 221 9.8e-15 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 2 cut(s) 203, 350
AccBSI CCGCTC 1 cut(s) 221
AciI CCGC 4 cut(s) 76, 108, 221, 423
AcsI RAATTY 1 cut(s) 507
AfaI GTAC 2 cut(s) 6, 352
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 1 cut(s) 649
AhlI ACTAGT 1 cut(s) 440
AjnI CCWGG 2 cut(s) 47, 574
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 563
AoxI GGCC 3 cut(s) 45, 144, 233
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 507
Asp718I GGTACC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
BanI GGYRCC 2 cut(s) 203, 350
BanII GRGCYC 1 cut(s) 179
BbvCI CCTCAGC 2 cut(s) 141, 450
BbvI GCAGC 1 cut(s) 40
BccI CCATC 3 cut(s) 98, 242, 331
BciT130I CCWGG 2 cut(s) 49, 576
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 563
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 2 cut(s) 188, 441
BisI GCNGC 2 cut(s) 54, 424
BlsI GCNGC 2 cut(s) 55, 425
Bme1390I CCNGG 2 cut(s) 49, 576
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 205, 352
BmrFI CCNGG 2 cut(s) 49, 576
BmsI GCATC 1 cut(s) 352
Bpu10I CCTNAGC 2 cut(s) 141, 450
BpuEI CTTGAG 2 cut(s) 80, 369
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 4 cut(s) 48, 236, 346, 574
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 172
BseBI CCWGG 2 cut(s) 49, 576
BseDI CCNNGG 4 cut(s) 48, 236, 346, 574
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 132, 441
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 3 cut(s) 77, 131, 134
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 3 cut(s) 47, 146, 235
BshNI GGYRCC 2 cut(s) 203, 350
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 563
BsnI GGCC 3 cut(s) 47, 146, 235
Bso31I GGTCTC 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 66, 262, 547
BspACI CCGC 4 cut(s) 76, 108, 221, 423
BspANI GGCC 3 cut(s) 47, 146, 235
BspCNI CTCAG 2 cut(s) 133, 442
BspLI GGNNCC 2 cut(s) 205, 352
BspT107I GGYRCC 2 cut(s) 203, 350
BspTNI GGTCTC 1 cut(s) 563
BsrBI CCGCTC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 4 cut(s) 48, 236, 346, 574
BssMI GATC 3 cut(s) 66, 262, 547
BssT1I CCWWGG 2 cut(s) 236, 346
Bst2UI CCWGG 2 cut(s) 49, 576
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 595
BstDEI CTNAG 2 cut(s) 141, 450
BstF5I GGATG 1 cut(s) 562
BstKTI GATC 3 cut(s) 69, 265, 550
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 3 cut(s) 66, 262, 547
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 49, 576
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 47, 574
BstV1I GCAGC 1 cut(s) 40
BsuRI GGCC 3 cut(s) 47, 146, 235
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 595
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 5, 351
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 2 cut(s) 38, 277
CviQI GTAC 2 cut(s) 5, 351
DdeI CTNAG 2 cut(s) 141, 450
DpnI GATC 3 cut(s) 68, 264, 549
DpnII GATC 3 cut(s) 66, 262, 547
Eam1104I CTCTTC 1 cut(s) 521
EarI CTCTTC 1 cut(s) 521
Eco130I CCWWGG 2 cut(s) 236, 346
Eco24I GRGCYC 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 47, 574
EcoT14I CCWWGG 2 cut(s) 236, 346
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 2 cut(s) 236, 346
FaeI CATG 2 cut(s) 41, 280
FaiI YATR 8 cut(s) 9, 39, 200, 278, 375, 411, 563, 602
FatI CATG 2 cut(s) 37, 276
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 54, 424
FokI GGATG 1 cut(s) 569
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 54, 424
FspBI CTAG 2 cut(s) 188, 441
GluI GCNGC 2 cut(s) 54, 424
HaeIII GGCC 3 cut(s) 47, 146, 235
HapII CCGG 1 cut(s) 147
Hin1II CATG 2 cut(s) 41, 280
HinfI GANTC 5 cut(s) 127, 299, 382, 533, 655
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 104
Hpy188III TCNNGA 4 cut(s) 537, 608, 646, 659
HpyAV CCTTC 5 cut(s) 16, 20, 37, 92, 559
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 164, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 141, 450
Hsp92II CATG 2 cut(s) 41, 280
KpnI GGTACC 1 cut(s) 354
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 66, 262, 547
LmnI GCTCC 4 cut(s) 78, 121, 218, 370
LpnPI CCDG 8 cut(s) 34, 61, 153, 160, 364, 431, 561, 588
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 352
MaeI CTAG 2 cut(s) 188, 441
MaeIII GTNAC 1 cut(s) 490
MalI GATC 3 cut(s) 68, 264, 549
MbiI CCGCTC 1 cut(s) 221
MboI GATC 3 cut(s) 66, 262, 547
MboII GAAGA 6 cut(s) 44, 107, 236, 538, 634, 661
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 3 cut(s) 243, 486, 507
MlyI GAGTC 3 cut(s) 308, 376, 649
MnlI CCTC 7 cut(s) 55, 109, 112, 136, 352, 445, 583
MseI TTAA 4 cut(s) 72, 518, 581, 618
MslI CAYNNNNRTG 2 cut(s) 12, 281
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 49, 576
MvaI CCWGG 2 cut(s) 49, 576
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 3 cut(s) 66, 262, 547
NlaIII CATG 2 cut(s) 41, 280
NlaIV GGNNCC 2 cut(s) 205, 352
NmuCI GTSAC 1 cut(s) 490
NspI RCATGY 1 cut(s) 280
PciI ACATGT 1 cut(s) 276
PfeI GAWTC 2 cut(s) 127, 533
PkrI GCNGC 2 cut(s) 55, 425
PleI GAGTC 3 cut(s) 307, 376, 649
PpsI GAGTC 3 cut(s) 307, 376, 649
PscI ACATGT 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 47, 574
PspGI CCWGG 2 cut(s) 47, 574
PspN4I GGNNCC 2 cut(s) 205, 352
PspPI GGNCC 1 cut(s) 233
RsaI GTAC 2 cut(s) 6, 352
RsaNI GTAC 2 cut(s) 5, 351
RseI CAYNNNNRTG 2 cut(s) 12, 281
SaqAI TTAA 4 cut(s) 72, 518, 581, 618
SatI GCNGC 2 cut(s) 54, 424
Sau3AI GATC 3 cut(s) 66, 262, 547
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 3 cut(s) 308, 376, 649
ScrFI CCNGG 2 cut(s) 49, 576
SduI GDGCHC 1 cut(s) 179
SetI ASST 3 cut(s) 126, 205, 352
SfaNI GCATC 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 12, 281
SmlI CTYRAG 2 cut(s) 59, 384
SmoI CTYRAG 2 cut(s) 59, 384
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 3 cut(s) 243, 486, 507
SsiI CCGC 4 cut(s) 76, 108, 221, 423
SspMI CTAG 2 cut(s) 188, 441
StyD4I CCNGG 2 cut(s) 47, 574
StyI CCWWGG 2 cut(s) 236, 346
TaaI ACNGT 1 cut(s) 92
TasI AATT 3 cut(s) 243, 486, 507
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 2 cut(s) 127, 533
Tru1I TTAA 4 cut(s) 72, 518, 581, 618
Tru9I TTAA 4 cut(s) 72, 518, 581, 618
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 3 cut(s) 30, 426, 578
TspGWI ACGGA 1 cut(s) 409
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 280
XspI CTAG 2 cut(s) 188, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.