RLG00000037002
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000329
Physical Location & Seq
Reverse (-)
87436427 .. 87437657
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037002

Sequence Viewer

Length: 837 bp
ATGGGAGATTCACAAGGGAATGGTAAAAGAAAAGATTACAAAACTTGGAACACTGAAGAAAGCAACGTTTTGCTTCAACTTATGGTTGAAGGCGCCAAACTTGGATTTCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGCAAAGCTACTTCCTAAACTTAAGGAAAAACTTGGTTATGAAATAACTTTTAGTCATTACCAAAGCAGAGTGAAATGGTTTAAGAAACAATACACCAATTACTCTCAGCTTATGCGCCATAGTTCTGGATTTGGGTGGGATCCCATCACAAAAAGATTCACTGCTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGTGATGATACAGATGCAACAACATTTGGAGCGGAGGAAAATGAATCTTGGGGAATTGGCGGCATAGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTACAAAGTGAAAATGAGTCATCACAACAACCCTCCCAAGGTACCAGTATAGATGCTCCAGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGAACTGACTATGAAAATAATAGTGGCTCAAAAGGGGCTACTGGTCAGGCTGAGGAGACTCCAGGATTAACTGATGAAGCTTGCTTTATGGCTCTTGATTTGCTTAATACTAAAGCAAAGCAAGATTTCTTCTTGAAGATGACTCCTGAACAGCGACTTAATTGGATCACCTATAAACAAATGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

279

Amino Acids

31.23

Weight (kDa)

5.6

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 15 - 112 3e-17 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 235 - 275 1.3e-17 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 593
AccB1I GGYRCC 2 cut(s) 92, 593
AccB7I CCANNNNNTGG 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 482
AciI CCGC 2 cut(s) 482, 510
AclI AACGTT 1 cut(s) 66
AclWI GGATC 3 cut(s) 281, 294, 821
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 555, 595
AfiI CCNNNNNNNGG 2 cut(s) 356, 590
AflII CTTAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 5 cut(s) 77, 89, 340, 400, 784
AjnI CCWGG 1 cut(s) 709
AluBI AGCT 4 cut(s) 154, 256, 614, 728
AluI AGCT 4 cut(s) 154, 256, 614, 728
Alw26I GTCTC 1 cut(s) 698
AlwI GGATC 3 cut(s) 281, 294, 821
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 378
Asp718I GGTACC 1 cut(s) 593
AspLEI GCGC 2 cut(s) 95, 264
AsuHPI GGTGA 2 cut(s) 464, 808
BaeGI GKGCMC 1 cut(s) 363
BamHI GGATCC 1 cut(s) 286
BanI GGYRCC 2 cut(s) 92, 593
BanII GRGCYC 1 cut(s) 440
BbvCI CCTCAGC 1 cut(s) 699
BccI CCATC 2 cut(s) 299, 512
BciT130I CCWGG 1 cut(s) 711
BcoDI GTCTC 1 cut(s) 698
BfaI CTAG 1 cut(s) 449
BfoI RGCGCY 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 512
Bme1390I CCNGG 1 cut(s) 711
BmiI GGNNCC 3 cut(s) 94, 288, 595
BmrFI CCNGG 1 cut(s) 711
BmsI GCATC 2 cut(s) 454, 595
BpmI CTGGAG 2 cut(s) 594, 693
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 589
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 590
Bse1I ACTGG 3 cut(s) 433, 597, 694
BseBI CCWGG 1 cut(s) 711
BseDI CCNNGG 1 cut(s) 589
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 356, 590
BseMII CTCAG 2 cut(s) 266, 690
BseNI ACTGG 3 cut(s) 433, 597, 694
BseRI GAGGAG 1 cut(s) 716
BseSI GKGCMC 1 cut(s) 363
BshNI GGYRCC 2 cut(s) 92, 593
BslI CCNNNNNNNGG 2 cut(s) 356, 590
BsmAI GTCTC 1 cut(s) 698
Bsp1286I GDGCHC 2 cut(s) 363, 440
Bsp143I GATC 3 cut(s) 286, 532, 813
BspACI CCGC 2 cut(s) 482, 510
BspCNI CTCAG 2 cut(s) 265, 691
BspLI GGNNCC 3 cut(s) 94, 288, 595
BspPI GGATC 3 cut(s) 281, 294, 821
BspT107I GGYRCC 2 cut(s) 92, 593
BspTI CTTAAG 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 482
BsrI ACTGG 3 cut(s) 433, 597, 694
BssECI CCNNGG 1 cut(s) 589
BssMI GATC 3 cut(s) 286, 532, 813
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 589
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 2 cut(s) 252, 699
BstF5I GGATG 1 cut(s) 346
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 264
BstKTI GATC 3 cut(s) 289, 535, 816
BstMAI GTCTC 1 cut(s) 698
BstMBI GATC 3 cut(s) 286, 532, 813
BstNI CCWGG 1 cut(s) 711
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 1 cut(s) 709
BstSLI GKGCMC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 1 cut(s) 286
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 51, 306
Cac8I GCNNGC 1 cut(s) 730
CfoI GCGC 2 cut(s) 95, 264
Csp6I GTAC 2 cut(s) 554, 594
CviAII CATG 2 cut(s) 356, 547
CviJI RGCY 9 cut(s) 154, 256, 438, 614, 675, 686, 698, 728, 740
CviKI_1 RGCY 9 cut(s) 154, 256, 438, 614, 675, 686, 698, 728, 740
CviQI GTAC 2 cut(s) 554, 594
DdeI CTNAG 2 cut(s) 252, 699
DinI GGCGCC 1 cut(s) 94
DpnI GATC 3 cut(s) 288, 534, 815
DpnII GATC 3 cut(s) 286, 532, 813
Eco130I CCWWGG 1 cut(s) 589
Eco24I GRGCYC 1 cut(s) 440
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 440
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 589
FaeI CATG 2 cut(s) 359, 550
FatI CATG 2 cut(s) 355, 546
Fnu4HI GCNGC 1 cut(s) 511
FokI GGATG 1 cut(s) 333
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 511
FspBI CTAG 1 cut(s) 449
GlaI GCGC 2 cut(s) 94, 263
GluI GCNGC 1 cut(s) 511
GsuI CTGGAG 2 cut(s) 594, 693
HaeII RGCGCY 1 cut(s) 96
HhaI GCGC 2 cut(s) 95, 264
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 2 cut(s) 359, 550
Hin6I GCGC 2 cut(s) 93, 262
HinP1I GCGC 2 cut(s) 93, 262
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 7 cut(s) 8, 303, 494, 569, 631, 706, 790
HphI GGTGA 2 cut(s) 464, 808
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 6 cut(s) 110, 273, 383, 743, 781, 794
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 4 cut(s) 407, 425, 467, 832
HpyF3I CTNAG 2 cut(s) 252, 699
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 2 cut(s) 359, 550
HspAI GCGC 2 cut(s) 93, 262
KasI GGCGCC 1 cut(s) 92
KpnI GGTACC 1 cut(s) 597
Kzo9I GATC 3 cut(s) 286, 532, 813
LmnI GCTCC 3 cut(s) 479, 613, 619
LweI GCATC 2 cut(s) 454, 595
MaeI CTAG 1 cut(s) 449
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 342
MalI GATC 3 cut(s) 288, 534, 815
MbiI CCGCTC 1 cut(s) 482
MboI GATC 3 cut(s) 286, 532, 813
MboII GAAGA 3 cut(s) 68, 769, 796
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 2 cut(s) 363, 440
MluCI AATT 4 cut(s) 244, 402, 504, 808
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 4 cut(s) 578, 625, 700, 784
MmeI TCCRAC 2 cut(s) 374, 391
MnlI CCTC 5 cut(s) 139, 385, 478, 595, 694
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 6 cut(s) 117, 168, 228, 716, 753, 807
MspCI CTTAAG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 711
NarI GGCGCC 1 cut(s) 93
NdeII GATC 3 cut(s) 286, 532, 813
NlaIII CATG 2 cut(s) 359, 550
NlaIV GGNNCC 3 cut(s) 94, 288, 595
NmuCI GTSAC 1 cut(s) 342
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 8, 303, 494
PflMI CCANNNNNTGG 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 709
PkrI GCNGC 1 cut(s) 512
PleI GAGTC 4 cut(s) 577, 625, 700, 784
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 4 cut(s) 577, 625, 700, 784
PscI ACATGT 1 cut(s) 546
PshBI ATTAAT 1 cut(s) 117
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 709
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 3 cut(s) 94, 288, 595
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 555, 595
RsaNI GTAC 2 cut(s) 554, 594
SaqAI TTAA 6 cut(s) 117, 168, 228, 716, 753, 807
SatI GCNGC 1 cut(s) 511
Sau3AI GATC 3 cut(s) 286, 532, 813
SchI GAGTC 4 cut(s) 578, 625, 700, 784
ScrFI CCNGG 1 cut(s) 711
SduI GDGCHC 2 cut(s) 363, 440
SetI ASST 8 cut(s) 69, 156, 258, 454, 595, 616, 730, 821
SfaNI GCATC 2 cut(s) 454, 595
SfoI GGCGCC 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 167, 633
SmoI CTYRAG 2 cut(s) 167, 633
Sse9I AATT 4 cut(s) 244, 402, 504, 808
SsiI CCGC 2 cut(s) 482, 510
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 709
StyI CCWWGG 1 cut(s) 589
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 535
TaqII GACCGA 1 cut(s) 357
TasI AATT 4 cut(s) 244, 402, 504, 808
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 3 cut(s) 8, 303, 494
Tru1I TTAA 6 cut(s) 117, 168, 228, 716, 753, 807
Tru9I TTAA 6 cut(s) 117, 168, 228, 716, 753, 807
TscAI CASTG 2 cut(s) 58, 313
TseFI GTSAC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 5 cut(s) 201, 333, 507, 675, 738
TspGWI ACGGA 1 cut(s) 658
TspRI CASTG 2 cut(s) 58, 313
Van91I CCANNNNNTGG 1 cut(s) 356
Vha464I CTTAAG 1 cut(s) 167
VspI ATTAAT 1 cut(s) 117
XceI RCATGY 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.