Rmu_sc0004511.1_g000002
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004511.1
OG0000329
Physical Location & Seq
Reverse (-)
2365 .. 2934
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004511.1_g000002.1.cds

Sequence Viewer

Length: 570 bp
atgaaacaaagaaaaattgcagttggaaatggaactgcaactggaatgggctcaatcagtctaggtgatgatacagatgcctctacatttggagcggaagaaaacggaccttggggaattgatggattagttttttatcaaaatactaacatgttcgtgcaaagtgaaaatgagtcatcacaccaagaaaactcgccatctctttcacaacaaggctcccaaggtaccaatgtagatgctccaccacatagcaggactcaaggaaaaaggagtagggctgactatgaaaataattcaaagggggcaactagtcaggctgaggttttagaaaacttatcaagtggcattggtaaaattgttacaagttttgataaaatttgtggcttaatggagaagagagaatcaagcgagagtgatcttttggatgctaagaaggagaccccaggattaactgatgaggcttgctttatggctcttgatttgcttaatactaaagcaaagtcagatttcttcttgaagatgactcctgaacaacgacataattggatcacctataaacaaatgcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

189

Amino Acids

20.65

Weight (kDa)

5.0

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 95
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 2 cut(s) 297, 517
AhlI ACTAGT 1 cut(s) 308
AjnI CCWGG 1 cut(s) 442
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 554
ApoI RAATTY 1 cut(s) 375
Asp718I GGTACC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 77, 541
AvaII GGWCC 1 cut(s) 107
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 318
BccI CCATC 2 cut(s) 116, 205
BciT130I CCWGG 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 431
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 2 cut(s) 62, 309
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 217, 226
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 3 cut(s) 67, 226, 415
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 110, 220, 442
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 110, 220, 442
BseGI GGATG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 431
Bso31I GGTCTC 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 415, 546
BspACI CCGC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 217, 226
BspPI GGATC 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 3 cut(s) 110, 220, 442
BssMI GATC 2 cut(s) 415, 546
BssT1I CCWWGG 2 cut(s) 110, 220
Bst2UI CCWGG 1 cut(s) 444
Bst6I CTCTTC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 318, 429
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 2 cut(s) 418, 549
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 2 cut(s) 415, 546
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 442
BtsCI GGATG 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 151
CviJI RGCY 7 cut(s) 51, 216, 278, 317, 384, 461, 473
CviKI_1 RGCY 7 cut(s) 51, 216, 278, 317, 384, 461, 473
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 2 cut(s) 318, 429
DpnI GATC 2 cut(s) 417, 548
DpnII GATC 2 cut(s) 415, 546
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 110, 220
Eco24I GRGCYC 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 110, 220
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 110, 220
FaeI CATG 1 cut(s) 154
FaiI YATR 6 cut(s) 152, 249, 285, 470, 540, 555
FatI CATG 1 cut(s) 150
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 53
FspBI CTAG 2 cut(s) 62, 309
Hin1II CATG 1 cut(s) 154
HinfI GANTC 4 cut(s) 173, 256, 401, 523
HphI GGTGA 2 cut(s) 77, 541
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 3 cut(s) 476, 514, 527
HpyAV CCTTC 1 cut(s) 427
HpyCH4V TGCA 4 cut(s) 20, 38, 160, 565
HpyF3I CTNAG 2 cut(s) 318, 429
Hsp92II CATG 1 cut(s) 154
KpnI GGTACC 1 cut(s) 228
Kzo9I GATC 2 cut(s) 415, 546
LmnI GCTCC 3 cut(s) 92, 221, 244
LpnPI CCDG 6 cut(s) 27, 238, 299, 429, 456, 540
LweI GCATC 3 cut(s) 67, 226, 415
MaeI CTAG 2 cut(s) 62, 309
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 417, 548
MbiI CCGCTC 1 cut(s) 95
MboI GATC 2 cut(s) 415, 546
MboII GAAGA 4 cut(s) 110, 406, 502, 529
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 6 cut(s) 15, 117, 292, 354, 375, 541
MlyI GAGTC 3 cut(s) 182, 250, 517
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 3 cut(s) 91, 313, 451
MseI TTAA 3 cut(s) 386, 449, 486
MslI CAYNNNNRTG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
NdeII GATC 2 cut(s) 415, 546
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 2 cut(s) 217, 226
NspI RCATGY 1 cut(s) 154
PciI ACATGT 1 cut(s) 150
PfeI GAWTC 1 cut(s) 401
PleI GAGTC 3 cut(s) 181, 250, 517
PpsI GAGTC 3 cut(s) 181, 250, 517
PscI ACATGT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 217, 226
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 386, 449, 486
Sau3AI GATC 2 cut(s) 415, 546
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 3 cut(s) 182, 250, 517
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 53
SetI ASST 5 cut(s) 67, 112, 226, 324, 554
SfaNI GCATC 3 cut(s) 67, 226, 415
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
SpeI ACTAGT 1 cut(s) 308
Sse9I AATT 6 cut(s) 15, 117, 292, 354, 375, 541
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 62, 309
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 2 cut(s) 110, 220
TasI AATT 6 cut(s) 15, 117, 292, 354, 375, 541
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 3 cut(s) 386, 449, 486
Tru9I TTAA 3 cut(s) 386, 449, 486
TspDTI ATGAA 2 cut(s) 17, 300
TspGWI ACGGA 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 375
XceI RCATGY 1 cut(s) 154
XspI CTAG 2 cut(s) 62, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.