Rroxscaffold_7G00187660
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000329
Physical Location & Seq
Reverse (-)
27063246 .. 27064114
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187660.1

Sequence Viewer

Length: 471 bp
ATGGTTGATACCGCCGTTAGGGGATGGCGTGACAATAGTGGCATTTTAAGTAAGCAAACAGTGGAAGAAAGAATACTTCTTGTTCTTAATGCAAAACTTGGCTCTGGTTTTGGATTTGATTCAACTATAAAGAGGTTTACTGCTTCTAATGAAGTATTGGAGGAATACCTTAAGGCTCACCCAAAGGACACCGACTTGCGCTATGGGACATTTGATGATTATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGCGGTTGAGAAAAACTCGGTCGGGTTGGGTAGTGTTACTAATGCAAGAACATTAGGTGTTGGTGAGGTGGCGTTTATGGAGAAGCTTGATAAACTTTACTCTGGTTTTGAAGTAATGATTAACTTACTAGAGAAAAGAGAGCGACAAAGTAAAATTTGGGATGCTATCATGGAGATTGCAAACTTGGATGAAGCTACCGGGTTTCAAGGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

156

Amino Acids

17.3

Weight (kDa)

4.74

Isoelectric Point (pI)

19.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 12, 257
AcsI RAATTY 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 18
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 3 cut(s) 123, 365, 461
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 340, 449
AluI AGCT 2 cut(s) 340, 449
ApoI RAATTY 1 cut(s) 408
AspLEI GCGC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 170, 329
BaeI ACNNNNGTAYC 1 cut(s) 33
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BccI CCATC 1 cut(s) 18
BcnI CCSGG 1 cut(s) 454
BfaI CTAG 1 cut(s) 383
BfrI CTTAAG 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 454
BmsI GCATC 1 cut(s) 406
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpuMI CCSGG 1 cut(s) 454
Bsc4I CCNNNNNNNGG 1 cut(s) 18
BseGI GGATG 3 cut(s) 29, 421, 448
BseLI CCNNNNNNNGG 1 cut(s) 18
Bsh1285I CGRYCG 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 276
BsiSI CCGG 1 cut(s) 453
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 220
BspACI CCGC 2 cut(s) 12, 257
BspTI CTTAAG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 61
BstAFI CTTAAG 1 cut(s) 170
BstF5I GGATG 3 cut(s) 29, 421, 448
BstHHI GCGC 1 cut(s) 201
BstMCI CGRYCG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 452
BtsCI GGATG 3 cut(s) 29, 421, 448
BtsIMutI CAGTG 1 cut(s) 66
CfoI GCGC 1 cut(s) 201
CviAII CATG 1 cut(s) 424
CviJI RGCY 5 cut(s) 102, 176, 340, 449, 465
CviKI_1 RGCY 5 cut(s) 102, 176, 340, 449, 465
FaeI CATG 1 cut(s) 427
FaiI YATR 5 cut(s) 128, 204, 222, 332, 425
FaqI GGGAC 1 cut(s) 220
FatI CATG 1 cut(s) 423
FokI GGATG 3 cut(s) 36, 428, 455
FspBI CTAG 1 cut(s) 383
GlaI GCGC 1 cut(s) 200
HapII CCGG 1 cut(s) 453
HhaI GCGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 427
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 453
HphI GGTGA 2 cut(s) 170, 329
Hpy166II GTNNAC 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 468
Hpy8I GTNNAC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 92, 299, 434
Hsp92II CATG 1 cut(s) 427
HspAI GCGC 1 cut(s) 199
LpnPI CCDG 3 cut(s) 90, 342, 466
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 383
MaeIII GTNAC 2 cut(s) 29, 289
MboII GAAGA 1 cut(s) 77
MluCI AATT 2 cut(s) 234, 408
MnlI CCTC 4 cut(s) 126, 154, 217, 313
MseI TTAA 4 cut(s) 47, 87, 171, 375
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 454
NciI CCSGG 1 cut(s) 454
NlaIII CATG 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 119
SaqAI TTAA 4 cut(s) 47, 87, 171, 375
ScrFI CCNGG 1 cut(s) 454
SetI ASST 6 cut(s) 137, 171, 313, 324, 342, 451
SfaNI GCATC 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 234, 408
SsiI CCGC 2 cut(s) 12, 257
SspMI CTAG 1 cut(s) 383
StyD4I CCNGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 61
TaqII GACCGA 1 cut(s) 262
TasI AATT 2 cut(s) 234, 408
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 4 cut(s) 47, 87, 171, 375
Tru9I TTAA 4 cut(s) 47, 87, 171, 375
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 165, 459
TspRI CASTG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 170
XapI RAATTY 1 cut(s) 408
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.