Rw6G003630
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000329
Physical Location & Seq
Forward (+)
5968012 .. 5969374
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003630.1

Sequence Viewer

Length: 813 bp
ATGGGTGATTCACAACAAGATGTCAAACAAAGGGGGGGTTATGAGCAGTGGCGCAAGGAAGAGAGCAATTTATTGTTAGAGCTCATGGTTGATGCTACCACTCGGGGATGGCGTGACAATAGTGGTATCTTTTCCAAGCAAACAGTTGAAGAAAGAATACTTCCCGTTCTTAATTCAAAACTTGGGTGTCATAAGACCTACAACAATTACCAAAGCCGGTTGAAGTGCTCTGGTTTTGGGTTTGACTCAACTACAAAGAGGTTCACTGCTTCAGATGAAGTATGGGAAGATTACCTAAAGGCTCACCCAAACGATACCAATTTACACTATGGGATATTTCATGATTATGTGGACTTGGAGATTGCTATTGGGAATGTAGGTGTTGGAGAAGATAGAGATATACGCATAGAAGACTTCGATTATGATGTAGATAGTGATGTGTTCGTAAGACCAAATCAGAATGATCGATCATTTCGCCCCACATCACCTCTAGGGTCGCCTGAAATTTTAGAGGTTCCCAAGCAAGGAAGAACCCAAACCAAAAGAAATAGAACCGAGTATGAAGAAAACACCCCTCAAAGTGGCATTATGGAACAACTTAATAAAATTTCGACTACTTTTGAAGGAGTCTATAGCCTATTGGCGAAGAGAGAAAGAATATTGGAGAAAAGAGAAAGGGAGAGAGAATATACAACTTGGGATGCTATCAAAGAGATCCCAAACATGGAAGAAGCTATTCGTTTCAAGGCGCTTGAGTTGCTTGACACCCAAACAAAAAAAGATGGTTTCCTGAAGATGTCTCCTGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

270

Amino Acids

31.47

Weight (kDa)

5.09

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 98 3.3e-09 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 233 - 270 4.3e-19 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 709
AcsI RAATTY 2 cut(s) 504, 606
AcuI CTGAAG 2 cut(s) 255, 812
AfiI CCNNNNNNNGG 3 cut(s) 524, 581, 724
AgsI TTSAA 5 cut(s) 149, 177, 223, 623, 745
AluBI AGCT 2 cut(s) 82, 734
AluI AGCT 2 cut(s) 82, 734
Alw21I GWGCWC 2 cut(s) 84, 230
Alw26I GTCTC 1 cut(s) 804
AlwI GGATC 1 cut(s) 709
Ama87I CYCGRG 1 cut(s) 102
ApoI RAATTY 2 cut(s) 504, 606
Asp700I GAANNNNTTC 1 cut(s) 735
AspLEI GCGC 2 cut(s) 54, 751
AsuHPI GGTGA 3 cut(s) 17, 296, 477
AvaI CYCGRG 1 cut(s) 102
BanII GRGCYC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 2 cut(s) 84, 230
BccI CCATC 2 cut(s) 102, 776
BcoDI GTCTC 1 cut(s) 804
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 1 cut(s) 631
BfoI RGCGCY 1 cut(s) 752
BmeT110I CYCGRG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 516
BmsI GCATC 2 cut(s) 82, 691
BpiI GAAGAC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 773
Bsa29I ATCGAT 1 cut(s) 466
Bsc4I CCNNNNNNNGG 3 cut(s) 524, 581, 724
Bse118I RCCGGY 1 cut(s) 216
BseCI ATCGAT 1 cut(s) 466
BseGI GGATG 2 cut(s) 113, 706
BseLI CCNNNNNNNGG 3 cut(s) 524, 581, 724
BshVI ATCGAT 1 cut(s) 466
BsiHKAI GWGCWC 2 cut(s) 84, 230
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 217
BslI CCNNNNNNNGG 3 cut(s) 524, 581, 724
BsmAI GTCTC 1 cut(s) 804
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 84, 230
Bsp143I GATC 3 cut(s) 463, 467, 714
BspDI ATCGAT 1 cut(s) 466
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 1 cut(s) 709
BsrFI RCCGGY 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 216
BssMI GATC 3 cut(s) 463, 467, 714
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 54, 641
BstF5I GGATG 2 cut(s) 113, 706
BstH2I RGCGCY 1 cut(s) 752
BstHHI GCGC 2 cut(s) 54, 751
BstKTI GATC 3 cut(s) 466, 470, 717
BstMAI GTCTC 1 cut(s) 804
BstMBI GATC 3 cut(s) 463, 467, 714
BstMWI GCNNNNNNNGC 1 cut(s) 757
BstSFI CTRYAG 1 cut(s) 631
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
Bsu15I ATCGAT 1 cut(s) 466
BsuTUI ATCGAT 1 cut(s) 466
BtsCI GGATG 2 cut(s) 113, 706
BtsI GCAGTG 2 cut(s) 53, 264
BtsIMutI CAGTG 2 cut(s) 53, 264
CciI TCATGA 1 cut(s) 340
CfoI GCGC 2 cut(s) 54, 751
Cfr10I RCCGGY 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 466
CviAII CATG 3 cut(s) 85, 341, 724
CviJI RGCY 5 cut(s) 82, 216, 302, 636, 734
CviKI_1 RGCY 5 cut(s) 82, 216, 302, 636, 734
DpnI GATC 3 cut(s) 465, 469, 716
DpnII GATC 3 cut(s) 463, 467, 714
Eam1104I CTCTTC 2 cut(s) 54, 641
EarI CTCTTC 2 cut(s) 54, 641
Ecl136II GAGCTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 2 cut(s) 255, 812
Eco88I CYCGRG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 3 cut(s) 88, 344, 727
FatI CATG 3 cut(s) 84, 340, 723
FokI GGATG 2 cut(s) 120, 713
FriOI GRGCYC 1 cut(s) 84
FspBI CTAG 1 cut(s) 491
GlaI GCGC 2 cut(s) 53, 750
HaeII RGCGCY 1 cut(s) 752
HapII CCGG 1 cut(s) 217
HhaI GCGC 2 cut(s) 54, 751
Hin1II CATG 3 cut(s) 88, 344, 727
Hin6I GCGC 2 cut(s) 52, 749
HinP1I GCGC 2 cut(s) 52, 749
HinfI GANTC 3 cut(s) 8, 245, 627
HpaII CCGG 1 cut(s) 217
HphI GGTGA 3 cut(s) 17, 296, 477
Hpy166II GTNNAC 2 cut(s) 264, 352
Hpy188I TCNGA 2 cut(s) 274, 459
Hpy188III TCNNGA 3 cut(s) 341, 790, 803
Hpy8I GTNNAC 2 cut(s) 264, 352
HpyAV CCTTC 1 cut(s) 617
HpyCH4III ACNGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 757
Hsp92II CATG 3 cut(s) 88, 344, 727
HspAI GCGC 2 cut(s) 52, 749
Kzo9I GATC 3 cut(s) 463, 467, 714
LpnPI CCDG 4 cut(s) 216, 230, 513, 803
LweI GCATC 2 cut(s) 82, 691
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 1 cut(s) 113
MalI GATC 3 cut(s) 465, 469, 716
MboI GATC 3 cut(s) 463, 467, 714
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 2 cut(s) 84, 230
MluCI AATT 6 cut(s) 67, 172, 205, 319, 504, 606
MlyI GAGTC 2 cut(s) 239, 636
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 4 cut(s) 252, 498, 505, 585
MroXI GAANNNNTTC 1 cut(s) 735
MseI TTAA 2 cut(s) 171, 600
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 757
NdeII GATC 3 cut(s) 463, 467, 714
NlaIII CATG 3 cut(s) 88, 344, 727
NlaIV GGNNCC 1 cut(s) 516
NmuCI GTSAC 1 cut(s) 113
PagI TCATGA 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 735
PfeI GAWTC 1 cut(s) 8
PleI GAGTC 2 cut(s) 239, 635
PpsI GAGTC 2 cut(s) 239, 635
Psp124BI GAGCTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 516
PsuI RGATCY 1 cut(s) 714
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 171, 600
Sau3AI GATC 3 cut(s) 463, 467, 714
SchI GAGTC 2 cut(s) 239, 636
SduI GDGCHC 2 cut(s) 84, 230
SetI ASST 8 cut(s) 84, 200, 263, 297, 382, 490, 516, 736
SfaNI GCATC 2 cut(s) 82, 691
SfcI CTRYAG 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 6 cut(s) 67, 172, 205, 319, 504, 606
SspI AATATT 1 cut(s) 660
SspMI CTAG 1 cut(s) 491
SstI GAGCTC 1 cut(s) 84
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 3 cut(s) 417, 466, 611
TasI AATT 6 cut(s) 67, 172, 205, 319, 504, 606
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 171, 600
Tru9I TTAA 2 cut(s) 171, 600
TscAI CASTG 2 cut(s) 53, 271
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 291, 329, 576
TspRI CASTG 2 cut(s) 53, 271
XapI RAATTY 2 cut(s) 504, 606
XmnI GAANNNNTTC 1 cut(s) 735
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.