At2g29880-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 4 cut(s) | 733, 747, 782, 1244 |
| Acc36I | ACCTGC | 4 cut(s) | 733, 747, 782, 1244 |
| Acc65I | GGTACC | 1 cut(s) | 2293 |
| AccB1I | GGYRCC | 1 cut(s) | 2293 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1165 |
| AccBSI | CCGCTC | 1 cut(s) | 2022 |
| AccI | GTMKAC | 3 cut(s) | 390, 1536, 1862 |
| AciI | CCGC | 4 cut(s) | 5, 237, 2020, 2156 |
| AclWI | GGATC | 3 cut(s) | 8, 404, 503 |
| AcoI | YGGCCR | 1 cut(s) | 58 |
| AcsI | RAATTY | 5 cut(s) | 362, 377, 1025, 1031, 1943 |
| AcuI | CTGAAG | 3 cut(s) | 422, 936, 2213 |
| AfaI | GTAC | 6 cut(s) | 518, 522, 578, 752, 1187, 2295 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 84, 207, 424, 935, 1165, 2173 |
| AflII | CTTAAG | 1 cut(s) | 1685 |
| AgeI | ACCGGT | 1 cut(s) | 2296 |
| AjnI | CCWGG | 2 cut(s) | 83, 1346 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1428, 1460 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 150, 182 |
| Alw26I | GTCTC | 2 cut(s) | 96, 457 |
| AlwI | GGATC | 3 cut(s) | 8, 404, 503 |
| Ama87I | CYCGRG | 1 cut(s) | 512 |
| AoxI | GGCC | 5 cut(s) | 58, 198, 1609, 1701, 1927 |
| ApaI | GGGCCC | 1 cut(s) | 1613 |
| ApeKI | GCWGC | 4 cut(s) | 710, 962, 1232, 2213 |
| ApoI | RAATTY | 5 cut(s) | 362, 377, 1025, 1031, 1943 |
| AseI | ATTAAT | 1 cut(s) | 837 |
| AsiGI | ACCGGT | 1 cut(s) | 2296 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2286 |
| Asp718I | GGTACC | 1 cut(s) | 2293 |
| AspLEI | GCGC | 1 cut(s) | 1650 |
| AspS9I | GGNCC | 6 cut(s) | 198, 1057, 1385, 1609, 1610, 1826 |
| AsuC2I | CCSGG | 2 cut(s) | 265, 987 |
| AsuHPI | GGTGA | 7 cut(s) | 40, 254, 728, 1263, 1268, 1502, 2213 |
| AvaI | CYCGRG | 1 cut(s) | 512 |
| AvaII | GGWCC | 3 cut(s) | 1057, 1385, 1826 |
| BaeGI | GKGCMC | 2 cut(s) | 1613, 1939 |
| BanI | GGYRCC | 1 cut(s) | 2293 |
| BanII | GRGCYC | 2 cut(s) | 848, 1613 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 894, 926 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| BbvI | GCAGC | 4 cut(s) | 697, 949, 1219, 2200 |
| BccI | CCATC | 4 cut(s) | 105, 123, 350, 1345 |
| BceAI | ACGGC | 1 cut(s) | 1485 |
| BciT130I | CCWGG | 2 cut(s) | 85, 1348 |
| BcnI | CCSGG | 2 cut(s) | 265, 987 |
| BcoDI | GTCTC | 2 cut(s) | 96, 457 |
| BfaI | CTAG | 6 cut(s) | 287, 407, 497, 1113, 1118, 1275 |
| BfmI | CTRYAG | 5 cut(s) | 591, 740, 888, 1728, 1863 |
| BfrI | CTTAAG | 1 cut(s) | 1685 |
| BfuAI | ACCTGC | 4 cut(s) | 733, 747, 782, 1244 |
| BglII | AGATCT | 1 cut(s) | 729 |
| BisI | GCNGC | 4 cut(s) | 711, 963, 1233, 2214 |
| BlpI | GCTNAGC | 1 cut(s) | 1473 |
| BlsI | GCNGC | 4 cut(s) | 712, 964, 1234, 2215 |
| Bme1390I | CCNGG | 4 cut(s) | 85, 265, 987, 1348 |
| Bme18I | GGWCC | 3 cut(s) | 1057, 1385, 1826 |
| BmeT110I | CYCGRG | 1 cut(s) | 512 |
| BmgT120I | GGNCC | 6 cut(s) | 198, 1057, 1385, 1609, 1610, 1826 |
| BmiI | GGNNCC | 3 cut(s) | 1611, 2098, 2295 |
| BmrFI | CCNGG | 4 cut(s) | 85, 265, 987, 1348 |
| BmrI | ACTGGG | 1 cut(s) | 945 |
| BmsI | GCATC | 7 cut(s) | 298, 664, 806, 1060, 1297, 1396, 2003 |
| BmuI | ACTGGG | 1 cut(s) | 945 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1346, 1378 |
| BpmI | CTGGAG | 2 cut(s) | 202, 990 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1473 |
| BpuEI | CTTGAG | 2 cut(s) | 443, 2060 |
| BpuMI | CCSGG | 2 cut(s) | 265, 987 |
| BsaAI | YACGTR | 1 cut(s) | 520 |
| BsaBI | GATNNNNATC | 2 cut(s) | 96, 114 |
| BsaJI | CCNNGG | 5 cut(s) | 83, 84, 848, 986, 1545 |
| BsaWI | WCCGGW | 2 cut(s) | 2296, 2320 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 84, 207, 424, 935, 1165, 2173 |
| Bse118I | RCCGGY | 5 cut(s) | 56, 68, 200, 239, 2296 |
| Bse1I | ACTGG | 5 cut(s) | 219, 940, 1266, 1530, 2084 |
| Bse3DI | GCAATG | 1 cut(s) | 2066 |
| Bse8I | GATNNNNATC | 2 cut(s) | 96, 114 |
| BseBI | CCWGG | 2 cut(s) | 85, 1348 |
| BseDI | CCNNGG | 5 cut(s) | 83, 84, 848, 986, 1545 |
| BseGI | GGATG | 8 cut(s) | 21, 730, 828, 1356, 1378, 1462, 1534, 2018 |
| BseJI | GATNNNNATC | 2 cut(s) | 96, 114 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 84, 207, 424, 935, 1165, 2173 |
| BseMI | GCAATG | 1 cut(s) | 2066 |
| BseMII | CTCAG | 8 cut(s) | 909, 1350, 1487, 1710, 1908, 2037, 2159, 2319 |
| BseNI | ACTGG | 5 cut(s) | 219, 940, 1266, 1530, 2084 |
| BseRI | GAGGAG | 2 cut(s) | 296, 494 |
| BseSI | GKGCMC | 2 cut(s) | 1613, 1939 |
| BseXI | GCAGC | 4 cut(s) | 697, 949, 1219, 2200 |
| BsgI | GTGCAG | 1 cut(s) | 2224 |
| BshFI | GGCC | 5 cut(s) | 60, 200, 1611, 1703, 1929 |
| BshNI | GGYRCC | 1 cut(s) | 2293 |
| BshTI | ACCGGT | 1 cut(s) | 2296 |
| BsiHKCI | CYCGRG | 1 cut(s) | 512 |
| BsiSI | CCGG | 9 cut(s) | 57, 69, 201, 240, 265, 986, 1596, 2297, 2321 |
| BslFI | GGGAC | 3 cut(s) | 224, 960, 1178 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 84, 207, 424, 935, 1165, 2173 |
| BsmAI | GTCTC | 2 cut(s) | 96, 457 |
| BsmBI | CGTCTC | 1 cut(s) | 96 |
| BsmFI | GGGAC | 3 cut(s) | 224, 960, 1178 |
| BsmI | GAATGC | 1 cut(s) | 1814 |
| BsnI | GGCC | 5 cut(s) | 60, 200, 1611, 1703, 1929 |
| BsoBI | CYCGRG | 1 cut(s) | 512 |
| Bsp120I | GGGCCC | 1 cut(s) | 1609 |
| Bsp1286I | GDGCHC | 3 cut(s) | 848, 1613, 1939 |
| Bsp1407I | TGTACA | 1 cut(s) | 1185 |
| Bsp143I | GATC | 6 cut(s) | 13, 321, 409, 508, 729, 1660 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1473 |
| Bsp19I | CCATGG | 1 cut(s) | 848 |
| BspACI | CCGC | 4 cut(s) | 5, 237, 2020, 2156 |
| BspANI | GGCC | 5 cut(s) | 60, 200, 1611, 1703, 1929 |
| BspCNI | CTCAG | 8 cut(s) | 908, 1349, 1486, 1709, 1907, 2036, 2160, 2320 |
| BspLI | GGNNCC | 3 cut(s) | 1611, 2098, 2295 |
| BspMAI | CTGCAG | 2 cut(s) | 744, 892 |
| BspMI | ACCTGC | 4 cut(s) | 733, 747, 782, 1244 |
| BspPI | GGATC | 3 cut(s) | 8, 404, 503 |
| BspQI | GCTCTTC | 2 cut(s) | 1034, 1967 |
| BspT107I | GGYRCC | 1 cut(s) | 2293 |
| BspTI | CTTAAG | 1 cut(s) | 1685 |
| BsrBI | CCGCTC | 1 cut(s) | 2022 |
| BsrDI | GCAATG | 1 cut(s) | 2066 |
| BsrFI | RCCGGY | 5 cut(s) | 56, 68, 200, 239, 2296 |
| BsrGI | TGTACA | 1 cut(s) | 1185 |
| BsrI | ACTGG | 5 cut(s) | 219, 940, 1266, 1530, 2084 |
| BssAI | RCCGGY | 5 cut(s) | 56, 68, 200, 239, 2296 |
| BssECI | CCNNGG | 5 cut(s) | 83, 84, 848, 986, 1545 |
| BssMI | GATC | 6 cut(s) | 13, 321, 409, 508, 729, 1660 |
| BssNAI | GTATAC | 1 cut(s) | 391 |
| BssT1I | CCWWGG | 2 cut(s) | 848, 1545 |
| Bst1107I | GTATAC | 1 cut(s) | 391 |
| Bst2UI | CCWGG | 2 cut(s) | 85, 1348 |
| Bst4CI | ACNGT | 9 cut(s) | 755, 1054, 1106, 1144, 1192, 1413, 1503, 1621, 1867 |
| Bst6I | CTCTTC | 5 cut(s) | 273, 441, 1034, 1277, 1967 |
| BstAFI | CTTAAG | 1 cut(s) | 1685 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 160 |
| BstAUI | TGTACA | 1 cut(s) | 1185 |
| BstBAI | YACGTR | 1 cut(s) | 520 |
| BstC8I | GCNNGC | 3 cut(s) | 152, 202, 789 |
| BstDSI | CCRYGG | 1 cut(s) | 848 |
| BstF5I | GGATG | 8 cut(s) | 21, 730, 828, 1356, 1378, 1462, 1534, 2018 |
| BstHHI | GCGC | 1 cut(s) | 1650 |
| BstKTI | GATC | 6 cut(s) | 16, 324, 412, 511, 732, 1663 |
| BstMAI | GTCTC | 2 cut(s) | 96, 457 |
| BstMBI | GATC | 6 cut(s) | 13, 321, 409, 508, 729, 1660 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 160, 896, 1809 |
| BstNI | CCWGG | 2 cut(s) | 85, 1348 |
| BstNSI | RCATGY | 1 cut(s) | 791 |
| BstSCI | CCNGG | 4 cut(s) | 83, 263, 985, 1346 |
| BstSFI | CTRYAG | 5 cut(s) | 591, 740, 888, 1728, 1863 |
| BstSLI | GKGCMC | 2 cut(s) | 1613, 1939 |
| BstSNI | TACGTA | 1 cut(s) | 520 |
| BstV1I | GCAGC | 4 cut(s) | 697, 949, 1219, 2200 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| BstX2I | RGATCY | 3 cut(s) | 409, 508, 729 |
| BstYI | RGATCY | 3 cut(s) | 409, 508, 729 |
| BstZ17I | GTATAC | 1 cut(s) | 391 |
| BsuRI | GGCC | 5 cut(s) | 60, 200, 1611, 1703, 1929 |
| BtgI | CCRYGG | 1 cut(s) | 848 |
| BtgZI | GCGATG | 1 cut(s) | 1320 |
| BtsCI | GGATG | 8 cut(s) | 21, 730, 828, 1356, 1378, 1462, 1534, 2018 |
| BtsI | GCAGTG | 2 cut(s) | 608, 2236 |
| BveI | ACCTGC | 4 cut(s) | 733, 747, 782, 1244 |
| Cac8I | GCNNGC | 3 cut(s) | 152, 202, 789 |
| CfoI | GCGC | 1 cut(s) | 1650 |
| Cfr10I | RCCGGY | 5 cut(s) | 56, 68, 200, 239, 2296 |
| Cfr13I | GGNCC | 6 cut(s) | 198, 1057, 1385, 1609, 1610, 1826 |
| Csp6I | GTAC | 6 cut(s) | 517, 521, 577, 751, 1186, 2294 |
| CspAI | ACCGGT | 1 cut(s) | 2296 |
| CviQI | GTAC | 6 cut(s) | 517, 521, 577, 751, 1186, 2294 |
| DpnI | GATC | 6 cut(s) | 15, 323, 411, 510, 731, 1662 |
| DpnII | GATC | 6 cut(s) | 13, 321, 409, 508, 729, 1660 |
| DraI | TTTAAA | 1 cut(s) | 1131 |
| EaeI | YGGCCR | 1 cut(s) | 58 |
| Eam1104I | CTCTTC | 5 cut(s) | 273, 441, 1034, 1277, 1967 |
| EarI | CTCTTC | 5 cut(s) | 273, 441, 1034, 1277, 1967 |
| EciI | GGCGGA | 2 cut(s) | 20, 226 |
| Eco105I | TACGTA | 1 cut(s) | 520 |
| Eco130I | CCWWGG | 2 cut(s) | 848, 1545 |
| Eco24I | GRGCYC | 2 cut(s) | 848, 1613 |
| Eco47I | GGWCC | 3 cut(s) | 1057, 1385, 1826 |
| Eco57I | CTGAAG | 3 cut(s) | 422, 936, 2213 |
| Eco88I | CYCGRG | 1 cut(s) | 512 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1609, 1610 |
| EcoRI | GAATTC | 1 cut(s) | 377 |
| EcoRII | CCWGG | 2 cut(s) | 83, 1346 |
| EcoT14I | CCWWGG | 2 cut(s) | 848, 1545 |
| EcoT22I | ATGCAT | 1 cut(s) | 313 |
| EcoT38I | GRGCYC | 2 cut(s) | 848, 1613 |
| ErhI | CCWWGG | 2 cut(s) | 848, 1545 |
| Esp3I | CGTCTC | 1 cut(s) | 96 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 147, 179 |
| FaqI | GGGAC | 3 cut(s) | 224, 960, 1178 |
| FauNDI | CATATG | 2 cut(s) | 1390, 1399 |
| FblI | GTMKAC | 3 cut(s) | 390, 1536, 1862 |
| Fnu4HI | GCNGC | 4 cut(s) | 711, 963, 1233, 2214 |
| FokI | GGATG | 8 cut(s) | 8, 737, 835, 1363, 1385, 1469, 1541, 2025 |
| FriOI | GRGCYC | 2 cut(s) | 848, 1613 |
| Fsp4HI | GCNGC | 4 cut(s) | 711, 963, 1233, 2214 |
| FspBI | CTAG | 6 cut(s) | 287, 407, 497, 1113, 1118, 1275 |
| GlaI | GCGC | 1 cut(s) | 1649 |
| GluI | GCNGC | 4 cut(s) | 711, 963, 1233, 2214 |
| GsuI | CTGGAG | 2 cut(s) | 202, 990 |
| HaeIII | GGCC | 5 cut(s) | 60, 200, 1611, 1703, 1929 |
| HapII | CCGG | 9 cut(s) | 57, 69, 201, 240, 265, 986, 1596, 2297, 2321 |
| HhaI | GCGC | 1 cut(s) | 1650 |
| Hin6I | GCGC | 1 cut(s) | 1648 |
| HinP1I | GCGC | 1 cut(s) | 1648 |
| HincII | GTYRAC | 2 cut(s) | 660, 2134 |
| HindII | GTYRAC | 2 cut(s) | 660, 2134 |
| HindIII | AAGCTT | 1 cut(s) | 490 |
| HpaII | CCGG | 9 cut(s) | 57, 69, 201, 240, 265, 986, 1596, 2297, 2321 |
| HphI | GGTGA | 7 cut(s) | 40, 254, 728, 1263, 1268, 1502, 2213 |
| Hpy166II | GTNNAC | 8 cut(s) | 391, 660, 1057, 1188, 1271, 1537, 1863, 2134 |
| Hpy188I | TCNGA | 4 cut(s) | 1339, 1418, 1699, 2232 |
| Hpy8I | GTNNAC | 8 cut(s) | 391, 660, 1057, 1188, 1271, 1537, 1863, 2134 |
| Hpy99I | CGWCG | 2 cut(s) | 44, 253 |
| HpyAV | CCTTC | 4 cut(s) | 775, 937, 1792, 2144 |
| HpyCH4III | ACNGT | 9 cut(s) | 755, 1054, 1106, 1144, 1192, 1413, 1503, 1621, 1867 |
| HpyCH4IV | ACGT | 3 cut(s) | 42, 175, 519 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 160, 896, 1809 |
| HpySE526I | ACGT | 3 cut(s) | 42, 175, 519 |
| HspAI | GCGC | 1 cut(s) | 1648 |
| KpnI | GGTACC | 1 cut(s) | 2297 |
| KroI | GCCGGC | 1 cut(s) | 200 |
| KroNI | GCCGGC | 1 cut(s) | 202 |
| Kzo9I | GATC | 6 cut(s) | 13, 321, 409, 508, 729, 1660 |
| LguI | GCTCTTC | 2 cut(s) | 1034, 1967 |
| LmnI | GCTCC | 8 cut(s) | 271, 283, 640, 784, 1510, 1567, 1971, 2096 |
| Lsp1109I | GCAGC | 4 cut(s) | 697, 949, 1219, 2200 |
| LweI | GCATC | 7 cut(s) | 298, 664, 806, 1060, 1297, 1396, 2003 |
| MaeI | CTAG | 6 cut(s) | 287, 407, 497, 1113, 1118, 1275 |
| MaeII | ACGT | 3 cut(s) | 42, 175, 519 |
| MaeIII | GTNAC | 7 cut(s) | 397, 606, 640, 931, 1256, 1375, 2201 |
| MalI | GATC | 6 cut(s) | 15, 323, 411, 510, 731, 1662 |
| MbiI | CCGCTC | 1 cut(s) | 2022 |
| MboI | GATC | 6 cut(s) | 13, 321, 409, 508, 729, 1660 |
| MfeI | CAATTG | 1 cut(s) | 551 |
| MflI | RGATCY | 3 cut(s) | 409, 508, 729 |
| MhlI | GDGCHC | 3 cut(s) | 848, 1613, 1939 |
| MlyI | GAGTC | 4 cut(s) | 887, 1168, 1328, 1355 |
| MmeI | TCCRAC | 3 cut(s) | 649, 1126, 1338 |
| Mph1103I | ATGCAT | 1 cut(s) | 313 |
| MroNI | GCCGGC | 1 cut(s) | 200 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2286 |
| MseI | TTAA | 9 cut(s) | 462, 705, 833, 837, 1095, 1130, 1686, 2076, 2258 |
| MslI | CAYNNNNRTG | 3 cut(s) | 24, 792, 853 |
| MspA1I | CMGCKG | 1 cut(s) | 899 |
| MspCI | CTTAAG | 1 cut(s) | 1685 |
| MspI | CCGG | 9 cut(s) | 57, 69, 201, 240, 265, 986, 1596, 2297, 2321 |
| MspR9I | CCNGG | 4 cut(s) | 85, 265, 987, 1348 |
| MunI | CAATTG | 1 cut(s) | 551 |
| Mva1269I | GAATGC | 1 cut(s) | 1814 |
| MvaI | CCWGG | 2 cut(s) | 85, 1348 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 160, 896, 1809 |
| NaeI | GCCGGC | 1 cut(s) | 202 |
| NciI | CCSGG | 2 cut(s) | 265, 987 |
| NcoI | CCATGG | 1 cut(s) | 848 |
| NdeI | CATATG | 2 cut(s) | 1390, 1399 |
| NdeII | GATC | 6 cut(s) | 13, 321, 409, 508, 729, 1660 |
| NgoMIV | GCCGGC | 1 cut(s) | 200 |
| NlaIV | GGNNCC | 3 cut(s) | 1611, 2098, 2295 |
| NmuCI | GTSAC | 4 cut(s) | 606, 1256, 1375, 2201 |
| NsiI | ATGCAT | 1 cut(s) | 313 |
| NspI | RCATGY | 1 cut(s) | 791 |
| PacI | TTAATTAA | 1 cut(s) | 837 |
| PaeI | GCATGC | 1 cut(s) | 791 |
| PaqCI | CACCTGC | 4 cut(s) | 733, 747, 782, 1244 |
| PasI | CCCWGGG | 1 cut(s) | 84 |
| PciSI | GCTCTTC | 2 cut(s) | 1034, 1967 |
| PctI | GAATGC | 1 cut(s) | 1814 |
| PdiI | GCCGGC | 1 cut(s) | 202 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2286 |
| PfeI | GAWTC | 7 cut(s) | 191, 245, 1109, 1121, 1778, 2110, 2341 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1165 |
| PinAI | ACCGGT | 1 cut(s) | 2296 |
| PkrI | GCNGC | 4 cut(s) | 712, 964, 1234, 2215 |
| PleI | GAGTC | 4 cut(s) | 887, 1168, 1328, 1355 |
| PpsI | GAGTC | 4 cut(s) | 887, 1168, 1328, 1355 |
| Ppu21I | YACGTR | 1 cut(s) | 520 |
| PshBI | ATTAAT | 1 cut(s) | 837 |
| Psp6I | CCWGG | 2 cut(s) | 83, 1346 |
| PspGI | CCWGG | 2 cut(s) | 83, 1346 |
| PspN4I | GGNNCC | 3 cut(s) | 1611, 2098, 2295 |
| PspOMI | GGGCCC | 1 cut(s) | 1609 |
| PspPI | GGNCC | 6 cut(s) | 198, 1057, 1385, 1609, 1610, 1826 |
| PstI | CTGCAG | 2 cut(s) | 744, 892 |
| PsuI | RGATCY | 3 cut(s) | 409, 508, 729 |
| PvuII | CAGCTG | 1 cut(s) | 899 |
| RsaI | GTAC | 6 cut(s) | 518, 522, 578, 752, 1187, 2295 |
| RsaNI | GTAC | 6 cut(s) | 517, 521, 577, 751, 1186, 2294 |
| RseI | CAYNNNNRTG | 3 cut(s) | 24, 792, 853 |
| SapI | GCTCTTC | 2 cut(s) | 1034, 1967 |
| SaqAI | TTAA | 9 cut(s) | 462, 705, 833, 837, 1095, 1130, 1686, 2076, 2258 |
| SatI | GCNGC | 4 cut(s) | 711, 963, 1233, 2214 |
| Sau3AI | GATC | 6 cut(s) | 13, 321, 409, 508, 729, 1660 |
| Sau96I | GGNCC | 6 cut(s) | 198, 1057, 1385, 1609, 1610, 1826 |
| SbfI | CCTGCAGG | 1 cut(s) | 744 |
| SchI | GAGTC | 4 cut(s) | 887, 1168, 1328, 1355 |
| ScrFI | CCNGG | 4 cut(s) | 85, 265, 987, 1348 |
| SdaI | CCTGCAGG | 1 cut(s) | 744 |
| SduI | GDGCHC | 3 cut(s) | 848, 1613, 1939 |
| SfaNI | GCATC | 7 cut(s) | 298, 664, 806, 1060, 1297, 1396, 2003 |
| SfcI | CTRYAG | 5 cut(s) | 591, 740, 888, 1728, 1863 |
| SgrAI | CRCCGGYG | 1 cut(s) | 239 |
| SinI | GGWCC | 3 cut(s) | 1057, 1385, 1826 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 24, 792, 853 |
| SmlI | CTYRAG | 3 cut(s) | 422, 1685, 2039 |
| SmoI | CTYRAG | 3 cut(s) | 422, 1685, 2039 |
| SnaBI | TACGTA | 1 cut(s) | 520 |
| SphI | GCATGC | 1 cut(s) | 791 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 744 |
| SsiI | CCGC | 4 cut(s) | 5, 237, 2020, 2156 |
| SspMI | CTAG | 6 cut(s) | 287, 407, 497, 1113, 1118, 1275 |
| StyD4I | CCNGG | 4 cut(s) | 83, 263, 985, 1346 |
| StyI | CCWWGG | 2 cut(s) | 848, 1545 |
| TaaI | ACNGT | 9 cut(s) | 755, 1054, 1106, 1144, 1192, 1413, 1503, 1621, 1867 |
| TaiI | ACGT | 3 cut(s) | 45, 178, 522 |
| TatI | WGTACW | 1 cut(s) | 1185 |
| TfiI | GAWTC | 7 cut(s) | 191, 245, 1109, 1121, 1778, 2110, 2341 |
| Tru1I | TTAA | 9 cut(s) | 462, 705, 833, 837, 1095, 1130, 1686, 2076, 2258 |
| Tru9I | TTAA | 9 cut(s) | 462, 705, 833, 837, 1095, 1130, 1686, 2076, 2258 |
| TseFI | GTSAC | 4 cut(s) | 606, 1256, 1375, 2201 |
| TseI | GCWGC | 4 cut(s) | 710, 962, 1232, 2213 |
| Tsp45I | GTSAC | 4 cut(s) | 606, 1256, 1375, 2201 |
| TspDTI | ATGAA | 9 cut(s) | 42, 116, 355, 390, 879, 1407, 1416, 1821, 2133 |
| TspGWI | ACGGA | 2 cut(s) | 586, 1037 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1165 |
| Vha464I | CTTAAG | 1 cut(s) | 1685 |
| VpaK11BI | GGWCC | 3 cut(s) | 1057, 1385, 1826 |
| VspI | ATTAAT | 1 cut(s) | 837 |
| XapI | RAATTY | 5 cut(s) | 362, 377, 1025, 1031, 1943 |
| XbaI | TCTAGA | 2 cut(s) | 406, 1117 |
| XceI | RCATGY | 1 cut(s) | 791 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2320 |
| XmiI | GTMKAC | 3 cut(s) | 390, 1536, 1862 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2286 |
| XspI | CTAG | 6 cut(s) | 287, 407, 497, 1113, 1118, 1275 |
| Zsp2I | ATGCAT | 1 cut(s) | 313 |